data_5CCY
#
_model_server_result.job_id            08PnZOhhLzAgNF3zUJ_8Ig 
_model_server_result.datetime_utc      '2024-11-13 19:35:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ccy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5CCY 
#
_exptl.entry_id    5CCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CCY 
_cell.length_a            73.908 
_cell.length_b            73.908 
_cell.length_c            128.282 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc7 B MN MN . A MN 301 1_555 D O2P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc8 B MN MN . A MN 301 1_555 D O1P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 C MN MN . A MN 302 1_555 D O2P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 E O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5CCY 
_atom_sites.fract_transf_matrix[1][1]    0.01353 
_atom_sites.fract_transf_matrix[1][2]    0.007812 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 201 MN MN . 
C 2 MN A 1 302 202 MN MN . 
D 3 TMP A 1 303 203 TMP TMP . 
E 4 HOH A 1 401 330 HOH HOH . 
E 4 HOH A 2 402 388 HOH HOH . 
E 4 HOH A 3 403 324 HOH HOH . 
E 4 HOH A 4 404 303 HOH HOH . 
E 4 HOH A 5 405 382 HOH HOH . 
E 4 HOH A 6 406 312 HOH HOH . 
E 4 HOH A 7 407 387 HOH HOH . 
E 4 HOH A 8 408 345 HOH HOH . 
E 4 HOH A 9 409 351 HOH HOH . 
E 4 HOH A 10 410 367 HOH HOH . 
E 4 HOH A 11 411 316 HOH HOH . 
E 4 HOH A 12 412 360 HOH HOH . 
E 4 HOH A 13 413 346 HOH HOH . 
E 4 HOH A 14 414 364 HOH HOH . 
E 4 HOH A 15 415 368 HOH HOH . 
E 4 HOH A 16 416 358 HOH HOH . 
E 4 HOH A 17 417 327 HOH HOH . 
E 4 HOH A 18 418 334 HOH HOH . 
E 4 HOH A 19 419 317 HOH HOH . 
E 4 HOH A 20 420 313 HOH HOH . 
E 4 HOH A 21 421 338 HOH HOH . 
E 4 HOH A 22 422 350 HOH HOH . 
E 4 HOH A 23 423 333 HOH HOH . 
E 4 HOH A 24 424 306 HOH HOH . 
E 4 HOH A 25 425 335 HOH HOH . 
E 4 HOH A 26 426 314 HOH HOH . 
E 4 HOH A 27 427 354 HOH HOH . 
E 4 HOH A 28 428 329 HOH HOH . 
E 4 HOH A 29 429 376 HOH HOH . 
E 4 HOH A 30 430 373 HOH HOH . 
E 4 HOH A 31 431 304 HOH HOH . 
E 4 HOH A 32 432 323 HOH HOH . 
E 4 HOH A 33 433 309 HOH HOH . 
E 4 HOH A 34 434 307 HOH HOH . 
E 4 HOH A 35 435 384 HOH HOH . 
E 4 HOH A 36 436 319 HOH HOH . 
E 4 HOH A 37 437 352 HOH HOH . 
E 4 HOH A 38 438 321 HOH HOH . 
E 4 HOH A 39 439 348 HOH HOH . 
E 4 HOH A 40 440 344 HOH HOH . 
E 4 HOH A 41 441 337 HOH HOH . 
E 4 HOH A 42 442 308 HOH HOH . 
E 4 HOH A 43 443 318 HOH HOH . 
E 4 HOH A 44 444 362 HOH HOH . 
E 4 HOH A 45 445 302 HOH HOH . 
E 4 HOH A 46 446 355 HOH HOH . 
E 4 HOH A 47 447 363 HOH HOH . 
E 4 HOH A 48 448 315 HOH HOH . 
E 4 HOH A 49 449 341 HOH HOH . 
E 4 HOH A 50 450 311 HOH HOH . 
E 4 HOH A 51 451 322 HOH HOH . 
E 4 HOH A 52 452 359 HOH HOH . 
E 4 HOH A 53 453 325 HOH HOH . 
E 4 HOH A 54 454 349 HOH HOH . 
E 4 HOH A 55 455 381 HOH HOH . 
E 4 HOH A 56 456 357 HOH HOH . 
E 4 HOH A 57 457 356 HOH HOH . 
E 4 HOH A 58 458 383 HOH HOH . 
E 4 HOH A 59 459 371 HOH HOH . 
E 4 HOH A 60 460 353 HOH HOH . 
E 4 HOH A 61 461 328 HOH HOH . 
E 4 HOH A 62 462 305 HOH HOH . 
E 4 HOH A 63 463 332 HOH HOH . 
E 4 HOH A 64 464 386 HOH HOH . 
E 4 HOH A 65 465 378 HOH HOH . 
E 4 HOH A 66 466 320 HOH HOH . 
E 4 HOH A 67 467 369 HOH HOH . 
E 4 HOH A 68 468 380 HOH HOH . 
E 4 HOH A 69 469 347 HOH HOH . 
E 4 HOH A 70 470 365 HOH HOH . 
E 4 HOH A 71 471 339 HOH HOH . 
E 4 HOH A 72 472 310 HOH HOH . 
E 4 HOH A 73 473 301 HOH HOH . 
E 4 HOH A 74 474 377 HOH HOH . 
E 4 HOH A 75 475 326 HOH HOH . 
E 4 HOH A 76 476 374 HOH HOH . 
E 4 HOH A 77 477 340 HOH HOH . 
E 4 HOH A 78 478 379 HOH HOH . 
E 4 HOH A 79 479 366 HOH HOH . 
E 4 HOH A 80 480 361 HOH HOH . 
E 4 HOH A 81 481 342 HOH HOH . 
E 4 HOH A 82 482 331 HOH HOH . 
E 4 HOH A 83 483 375 HOH HOH . 
E 4 HOH A 84 484 336 HOH HOH . 
E 4 HOH A 85 485 385 HOH HOH . 
E 4 HOH A 86 486 343 HOH HOH . 
E 4 HOH A 87 487 370 HOH HOH . 
E 4 HOH A 88 488 372 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -11.492 
_atom_site.Cartn_y               75.873 
_atom_site.Cartn_z               16.952 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#