data_5CEH # _model_server_result.job_id Yix1kberd2vxoNGGpn550Q _model_server_result.datetime_utc '2024-11-24 18:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ceh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 5CEH # _exptl.entry_id 5CEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.309 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-oxo-5-phenyl-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CEH _cell.length_a 159.306 _cell.length_b 159.306 _cell.length_c 92.462 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 682 A CYS 692 1_555 A SG CYS 697 A CYS 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 682 A CYS 692 1_555 A SG CYS 699 A CYS 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? covale ? covale1 B C UNK 1 B UNK 905 1_555 B N UNK 2 B UNK 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C UNK 2 B UNK 906 1_555 B N UNK 3 B UNK 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C UNK 3 B UNK 907 1_555 B N UNK 4 B UNK 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C UNK 4 B UNK 908 1_555 B N UNK 5 B UNK 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 B C UNK 5 B UNK 909 1_555 B N UNK 6 B UNK 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C UNK 6 B UNK 910 1_555 B N UNK 7 B UNK 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B C UNK 7 B UNK 911 1_555 B N UNK 8 B UNK 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 B C UNK 8 B UNK 912 1_555 B N UNK 9 B UNK 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C UNK 9 B UNK 913 1_555 B N UNK 10 B UNK 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A NE2 HIS 473 A HIS 483 1_555 C NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A OE2 GLU 475 A GLU 485 1_555 C NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 A NE2 HIS 561 A HIS 571 1_555 C NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A SG CYS 666 A CYS 676 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc5 A SG CYS 669 A CYS 679 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 A SG CYS 680 A CYS 690 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc7 A SG CYS 682 A CYS 692 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 A SG CYS 689 A CYS 699 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc9 A ND1 HIS 692 A HIS 702 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc10 A SG CYS 697 A CYS 707 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc11 A SG CYS 699 A CYS 709 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc12 C NI NI . A NI 901 1_555 F N16 50P . A 50P 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc13 C NI NI . A NI 901 1_555 G O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'C16 H14 N4 O' _chem_comp.formula_weight 278.309 _chem_comp.id 50P _chem_comp.mon_nstd_flag . _chem_comp.name 7-oxo-5-phenyl-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C15 50P trip 1 n n C15 C9 50P sing 2 n n C10 C9 50P sing 3 n y C10 N11 50P doub 4 n y C9 C8 50P doub 5 n y N11 N12 50P sing 6 n y C8 N6 50P sing 7 n n C8 N12 50P sing 8 n y N6 C5 50P sing 9 n n N12 C13 50P sing 10 n n C5 C17 50P sing 11 n n C5 C4 50P doub 12 n n C13 O14 50P doub 13 n n C13 C4 50P sing 14 n n C22 C17 50P doub 15 n y C22 C21 50P sing 16 n y C17 C18 50P sing 17 n y C21 C20 50P doub 18 n y C4 C2 50P sing 19 n n C18 C19 50P doub 20 n y C20 C19 50P sing 21 n y C3 C2 50P sing 22 n n C2 C1 50P sing 23 n n C10 H1 50P sing 24 n n C3 H2 50P sing 25 n n C3 H3 50P sing 26 n n C3 H4 50P sing 27 n n C1 H5 50P sing 28 n n C1 H6 50P sing 29 n n C1 H8 50P sing 30 n n C2 H9 50P sing 31 n n N6 H7 50P sing 32 n n C18 H10 50P sing 33 n n C19 H11 50P sing 34 n n C20 H12 50P sing 35 n n C21 H13 50P sing 36 n n C22 H14 50P sing 37 n n # _atom_sites.entry_id 5CEH _atom_sites.fract_transf_matrix[1][1] 0.006277 _atom_sites.fract_transf_matrix[1][2] 0.003624 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 901 901 NI NI . D 4 ZN A 1 902 902 ZN ZN . E 4 ZN A 1 903 903 ZN ZN . F 5 50P A 1 904 904 50P 50P . G 6 HOH A 1 1001 1001 HOH HOH . G 6 HOH A 2 1002 1002 HOH HOH . G 6 HOH A 3 1003 1003 HOH HOH . G 6 HOH A 4 1004 1004 HOH HOH . G 6 HOH A 5 1005 1005 HOH HOH . G 6 HOH A 6 1006 1006 HOH HOH . G 6 HOH A 7 1007 1007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 50P . . . F 5 128.781 369.311 115.525 1 11.22 ? C4 50P 904 A 1 HETATM 2 C C5 50P . . . F 5 129.37 368.249 114.85 1 18.35 ? C5 50P 904 A 1 HETATM 3 C C8 50P . . . F 5 129.684 369.655 112.922 1 30.35 ? C8 50P 904 A 1 HETATM 4 C C9 50P . . . F 5 130.053 370.131 111.654 1 30.39 ? C9 50P 904 A 1 HETATM 5 C C10 50P . . . F 5 129.596 371.457 111.622 1 28.67 ? C10 50P 904 A 1 HETATM 6 C C13 50P . . . F 5 128.627 370.624 114.892 1 16.38 ? C13 50P 904 A 1 HETATM 7 C C3 50P . . . F 5 126.657 369.381 116.911 1 10 ? C3 50P 904 A 1 HETATM 8 C C1 50P . . . F 5 128.795 370.217 117.914 1 11.38 ? C1 50P 904 A 1 HETATM 9 C C2 50P . . . F 5 128.181 369.231 116.919 1 10.13 ? C2 50P 904 A 1 HETATM 10 N N6 50P . . . F 5 129.808 368.446 113.552 1 24.87 ? N6 50P 904 A 1 HETATM 11 N N11 50P . . . F 5 129.022 371.818 112.759 1 17.8 ? N11 50P 904 A 1 HETATM 12 N N12 50P . . . F 5 129.094 370.703 113.566 1 20.2 ? N12 50P 904 A 1 HETATM 13 O O14 50P . . . F 5 128.166 371.613 115.454 1 10 ? O14 50P 904 A 1 HETATM 14 C C15 50P . . . F 5 130.841 369.429 110.67 1 23.57 ? C15 50P 904 A 1 HETATM 15 N N16 50P . . . F 5 131.486 368.838 109.927 1 35.3 ? N16 50P 904 A 1 HETATM 16 C C17 50P . . . F 5 129.649 366.887 115.369 1 30.66 ? C17 50P 904 A 1 HETATM 17 C C18 50P . . . F 5 128.657 366.153 116.022 1 22.58 ? C18 50P 904 A 1 HETATM 18 C C19 50P . . . F 5 128.922 364.874 116.475 1 10 ? C19 50P 904 A 1 HETATM 19 C C20 50P . . . F 5 130.152 364.302 116.283 1 49.16 ? C20 50P 904 A 1 HETATM 20 C C21 50P . . . F 5 131.139 365.01 115.637 1 61.08 ? C21 50P 904 A 1 HETATM 21 C C22 50P . . . F 5 130.891 366.294 115.185 1 56.64 ? C22 50P 904 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #