data_5CEO # _model_server_result.job_id g0SEyPECkGuV0waQA8HngQ _model_server_result.datetime_utc '2024-11-22 12:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ceo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5CEO # _exptl.entry_id 5CEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[6-[3,3-bis(fluoranyl)pyrrolidin-1-yl]-4-[1-(oxetan-3-yl)piperidin-4-yl]pyridin-2-yl]amino]pyridine-4-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.37 _cell.angle_gamma 90 _cell.entry_id 5CEO _cell.length_a 57.82 _cell.length_b 39.04 _cell.length_c 62.79 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 F2 N6 O' _chem_comp.formula_weight 440.489 _chem_comp.id 50D _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[6-[3,3-bis(fluoranyl)pyrrolidin-1-yl]-4-[1-(oxetan-3-yl)piperidin-4-yl]pyridin-2-yl]amino]pyridine-4-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 50D sing 1 n n C30 O31 50D sing 2 n n C25 C24 50D sing 3 n n C25 N26 50D sing 4 n n C29 N26 50D sing 5 n n C29 C32 50D sing 6 n n O31 C32 50D sing 7 n n C24 C23 50D sing 8 n n N26 C27 50D sing 9 n n C23 C12 50D sing 10 n n C23 C28 50D sing 11 n n C18 C17 50D sing 12 n n C18 C19 50D sing 13 n n C27 C28 50D sing 14 n n C17 N16 50D sing 15 n n C13 C12 50D doub 16 n y C13 C14 50D sing 17 n y C12 C11 50D sing 18 n y N16 C14 50D sing 19 n n N16 C20 50D sing 20 n n C14 N15 50D doub 21 n y C11 C10 50D doub 22 n y F22 C19 50D sing 23 n n C20 C19 50D sing 24 n n C19 F21 50D sing 25 n n N15 C10 50D sing 26 n y C10 N9 50D sing 27 n n N9 C4 50D sing 28 n n C4 N3 50D doub 29 n y C4 C5 50D sing 30 n y N3 C2 50D sing 31 n y C5 C6 50D doub 32 n y C2 C1 50D doub 33 n y C6 C1 50D sing 34 n y C6 C7 50D sing 35 n n C7 N8 50D trip 36 n n C5 H1 50D sing 37 n n C11 H2 50D sing 38 n n C13 H3 50D sing 39 n n C1 H4 50D sing 40 n n C2 H5 50D sing 41 n n N9 H6 50D sing 42 n n C17 H7 50D sing 43 n n C17 H8 50D sing 44 n n C18 H9 50D sing 45 n n C18 H10 50D sing 46 n n C20 H11 50D sing 47 n n C20 H12 50D sing 48 n n C23 H13 50D sing 49 n n C24 H14 50D sing 50 n n C24 H15 50D sing 51 n n C25 H16 50D sing 52 n n C25 H17 50D sing 53 n n C27 H19 50D sing 54 n n C27 H20 50D sing 55 n n C28 H21 50D sing 56 n n C28 H22 50D sing 57 n n C29 H23 50D sing 58 n n C30 H24 50D sing 59 n n C30 H25 50D sing 60 n n C32 H26 50D sing 61 n n C32 H27 50D sing 62 n n # _atom_sites.entry_id 5CEO _atom_sites.fract_transf_matrix[1][1] 0.017295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00541 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 50D A 1 501 1 50D DRG . C 3 HOH A 1 601 36 HOH HOH . C 3 HOH A 2 602 90 HOH HOH . C 3 HOH A 3 603 17 HOH HOH . C 3 HOH A 4 604 2 HOH HOH . C 3 HOH A 5 605 26 HOH HOH . C 3 HOH A 6 606 4 HOH HOH . C 3 HOH A 7 607 39 HOH HOH . C 3 HOH A 8 608 69 HOH HOH . C 3 HOH A 9 609 89 HOH HOH . C 3 HOH A 10 610 27 HOH HOH . C 3 HOH A 11 611 1 HOH HOH . C 3 HOH A 12 612 88 HOH HOH . C 3 HOH A 13 613 61 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 78 HOH HOH . C 3 HOH A 16 616 37 HOH HOH . C 3 HOH A 17 617 15 HOH HOH . C 3 HOH A 18 618 74 HOH HOH . C 3 HOH A 19 619 71 HOH HOH . C 3 HOH A 20 620 10 HOH HOH . C 3 HOH A 21 621 43 HOH HOH . C 3 HOH A 22 622 58 HOH HOH . C 3 HOH A 23 623 9 HOH HOH . C 3 HOH A 24 624 87 HOH HOH . C 3 HOH A 25 625 72 HOH HOH . C 3 HOH A 26 626 80 HOH HOH . C 3 HOH A 27 627 52 HOH HOH . C 3 HOH A 28 628 46 HOH HOH . C 3 HOH A 29 629 47 HOH HOH . C 3 HOH A 30 630 8 HOH HOH . C 3 HOH A 31 631 12 HOH HOH . C 3 HOH A 32 632 67 HOH HOH . C 3 HOH A 33 633 40 HOH HOH . C 3 HOH A 34 634 7 HOH HOH . C 3 HOH A 35 635 20 HOH HOH . C 3 HOH A 36 636 59 HOH HOH . C 3 HOH A 37 637 5 HOH HOH . C 3 HOH A 38 638 82 HOH HOH . C 3 HOH A 39 639 76 HOH HOH . C 3 HOH A 40 640 44 HOH HOH . C 3 HOH A 41 641 31 HOH HOH . C 3 HOH A 42 642 75 HOH HOH . C 3 HOH A 43 643 11 HOH HOH . C 3 HOH A 44 644 77 HOH HOH . C 3 HOH A 45 645 79 HOH HOH . C 3 HOH A 46 646 62 HOH HOH . C 3 HOH A 47 647 73 HOH HOH . C 3 HOH A 48 648 30 HOH HOH . C 3 HOH A 49 649 63 HOH HOH . C 3 HOH A 50 650 70 HOH HOH . C 3 HOH A 51 651 42 HOH HOH . C 3 HOH A 52 652 86 HOH HOH . C 3 HOH A 53 653 56 HOH HOH . C 3 HOH A 54 654 66 HOH HOH . C 3 HOH A 55 655 33 HOH HOH . C 3 HOH A 56 656 64 HOH HOH . C 3 HOH A 57 657 38 HOH HOH . C 3 HOH A 58 658 60 HOH HOH . C 3 HOH A 59 659 25 HOH HOH . C 3 HOH A 60 660 49 HOH HOH . C 3 HOH A 61 661 57 HOH HOH . C 3 HOH A 62 662 65 HOH HOH . C 3 HOH A 63 663 84 HOH HOH . C 3 HOH A 64 664 50 HOH HOH . C 3 HOH A 65 665 3 HOH HOH . C 3 HOH A 66 666 29 HOH HOH . C 3 HOH A 67 667 83 HOH HOH . C 3 HOH A 68 668 24 HOH HOH . C 3 HOH A 69 669 55 HOH HOH . C 3 HOH A 70 670 23 HOH HOH . C 3 HOH A 71 671 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 50D . . . B 2 7.147 10.671 33.326 1 32.83 ? C4 50D 501 A 1 HETATM 2 C C14 50D . . . B 2 3.951 13.187 31.857 1 40.16 ? C14 50D 501 A 1 HETATM 3 C C5 50D . . . B 2 5.954 9.984 33.609 1 35.4 ? C5 50D 501 A 1 HETATM 4 C C6 50D . . . B 2 6.06 8.697 34.133 1 35.92 ? C6 50D 501 A 1 HETATM 5 C C11 50D . . . B 2 6.537 14.101 31.972 1 37.05 ? C11 50D 501 A 1 HETATM 6 C C7 50D . . . B 2 4.868 7.968 34.49 1 40.6 ? C7 50D 501 A 1 HETATM 7 C C10 50D . . . B 2 6.181 12.812 32.363 1 34.98 ? C10 50D 501 A 1 HETATM 8 C C12 50D . . . B 2 5.547 14.961 31.514 1 38.86 ? C12 50D 501 A 1 HETATM 9 C C13 50D . . . B 2 4.231 14.507 31.474 1 38.18 ? C13 50D 501 A 1 HETATM 10 N N3 50D . . . B 2 8.372 10.136 33.525 1 32.31 ? N3 50D 501 A 1 HETATM 11 C C1 50D . . . B 2 7.314 8.13 34.322 1 32.06 ? C1 50D 501 A 1 HETATM 12 C C2 50D . . . B 2 8.429 8.879 33.997 1 33.07 ? C2 50D 501 A 1 HETATM 13 N N8 50D . . . B 2 3.941 7.364 34.776 1 40.77 ? N8 50D 501 A 1 HETATM 14 N N9 50D . . . B 2 7.174 11.959 32.817 1 30.74 ? N9 50D 501 A 1 HETATM 15 N N15 50D . . . B 2 4.92 12.369 32.295 1 37.49 ? N15 50D 501 A 1 HETATM 16 N N16 50D . . . B 2 2.676 12.644 31.771 1 40.01 ? N16 50D 501 A 1 HETATM 17 C C17 50D . . . B 2 1.459 13.315 31.3 1 39.14 ? C17 50D 501 A 1 HETATM 18 C C18 50D . . . B 2 0.372 12.25 31.199 1 39.42 ? C18 50D 501 A 1 HETATM 19 C C19 50D . . . B 2 0.827 11.24 32.277 1 43.39 ? C19 50D 501 A 1 HETATM 20 C C20 50D . . . B 2 2.375 11.282 32.264 1 39.2 ? C20 50D 501 A 1 HETATM 21 F F21 50D . . . B 2 0.336 11.607 33.502 1 44.22 ? F21 50D 501 A 1 HETATM 22 F F22 50D . . . B 2 0.386 9.949 32.132 1 48.1 ? F22 50D 501 A 1 HETATM 23 C C23 50D . . . B 2 5.925 16.32 30.97 1 43.62 ? C23 50D 501 A 1 HETATM 24 C C24 50D . . . B 2 5.5 16.543 29.513 1 45.52 ? C24 50D 501 A 1 HETATM 25 C C25 50D . . . B 2 5.994 17.892 28.998 1 46.59 ? C25 50D 501 A 1 HETATM 26 N N26 50D . . . B 2 5.515 19.007 29.837 1 48.02 ? N26 50D 501 A 1 HETATM 27 C C27 50D . . . B 2 5.926 18.826 31.243 1 45.89 ? C27 50D 501 A 1 HETATM 28 C C28 50D . . . B 2 5.44 17.496 31.821 1 44.57 ? C28 50D 501 A 1 HETATM 29 C C29 50D . . . B 2 5.938 20.312 29.29 1 51.47 ? C29 50D 501 A 1 HETATM 30 C C30 50D . . . B 2 4.938 20.925 28.251 1 50.23 ? C30 50D 501 A 1 HETATM 31 O O31 50D . . . B 2 4.287 21.571 29.358 1 50.29 ? O31 50D 501 A 1 HETATM 32 C C32 50D . . . B 2 5.49 21.593 30.106 1 50.59 ? C32 50D 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #