data_5CEQ # _model_server_result.job_id CUNimRpU-x7vn_MPI95OMg _model_server_result.datetime_utc '2025-07-16 20:05:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ceq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 5CEQ # _exptl.entry_id 5CEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.497 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[1-cyclopentyl-5-[1-(oxetan-3-yl)piperidin-4-yl]pyrazol-3-yl]amino]pyridine-4-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.8 _cell.angle_gamma 90 _cell.entry_id 5CEQ _cell.length_a 57.404 _cell.length_b 39.223 _cell.length_c 59.815 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H28 N6 O' _chem_comp.formula_weight 392.497 _chem_comp.id 50F _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[1-cyclopentyl-5-[1-(oxetan-3-yl)piperidin-4-yl]pyrazol-3-yl]amino]pyridine-4-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 O28 50F sing 1 n n C29 C26 50F sing 2 n n O28 C27 50F sing 3 n n C22 C21 50F sing 4 n n C22 N23 50F sing 5 n n C26 C27 50F sing 6 n n C26 N23 50F sing 7 n n C21 C20 50F sing 8 n n N23 C24 50F sing 9 n n C16 C17 50F sing 10 n n C16 C15 50F sing 11 n n C20 C12 50F sing 12 n n C20 C25 50F sing 13 n n C17 C18 50F sing 14 n n C24 C25 50F sing 15 n n C12 N13 50F sing 16 n y C12 C11 50F doub 17 n y C15 N13 50F sing 18 n n C15 C19 50F sing 19 n n N13 N14 50F sing 20 n y C11 C10 50F sing 21 n y N14 C10 50F doub 22 n y C10 N9 50F sing 23 n n C18 C19 50F sing 24 n n N9 C4 50F sing 25 n n C4 N3 50F doub 26 n y C4 C5 50F sing 27 n y N3 C2 50F sing 28 n y C5 C6 50F doub 29 n y C2 C1 50F doub 30 n y C6 C1 50F sing 31 n y C6 C7 50F sing 32 n n C7 N8 50F trip 33 n n C5 H1 50F sing 34 n n C11 H2 50F sing 35 n n C1 H3 50F sing 36 n n C2 H4 50F sing 37 n n N9 H5 50F sing 38 n n C15 H6 50F sing 39 n n C16 H7 50F sing 40 n n C16 H8 50F sing 41 n n C17 H9 50F sing 42 n n C17 H10 50F sing 43 n n C18 H11 50F sing 44 n n C18 H12 50F sing 45 n n C19 H13 50F sing 46 n n C19 H14 50F sing 47 n n C20 H15 50F sing 48 n n C21 H16 50F sing 49 n n C21 H17 50F sing 50 n n C22 H18 50F sing 51 n n C22 H19 50F sing 52 n n C24 H21 50F sing 53 n n C24 H22 50F sing 54 n n C25 H23 50F sing 55 n n C25 H24 50F sing 56 n n C26 H25 50F sing 57 n n C27 H26 50F sing 58 n n C27 H27 50F sing 59 n n C29 H28 50F sing 60 n n C29 H29 50F sing 61 n n # _atom_sites.entry_id 5CEQ _atom_sites.fract_transf_matrix[1][1] 0.01742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 50F A 1 4000 4000 50F DRG . C 3 HOH A 1 4101 21 HOH HOH . C 3 HOH A 2 4102 215 HOH HOH . C 3 HOH A 3 4103 164 HOH HOH . C 3 HOH A 4 4104 171 HOH HOH . C 3 HOH A 5 4105 77 HOH HOH . C 3 HOH A 6 4106 54 HOH HOH . C 3 HOH A 7 4107 219 HOH HOH . C 3 HOH A 8 4108 145 HOH HOH . C 3 HOH A 9 4109 41 HOH HOH . C 3 HOH A 10 4110 86 HOH HOH . C 3 HOH A 11 4111 229 HOH HOH . C 3 HOH A 12 4112 120 HOH HOH . C 3 HOH A 13 4113 186 HOH HOH . C 3 HOH A 14 4114 180 HOH HOH . C 3 HOH A 15 4115 60 HOH HOH . C 3 HOH A 16 4116 25 HOH HOH . C 3 HOH A 17 4117 224 HOH HOH . C 3 HOH A 18 4118 122 HOH HOH . C 3 HOH A 19 4119 89 HOH HOH . C 3 HOH A 20 4120 177 HOH HOH . C 3 HOH A 21 4121 193 HOH HOH . C 3 HOH A 22 4122 114 HOH HOH . C 3 HOH A 23 4123 32 HOH HOH . C 3 HOH A 24 4124 127 HOH HOH . C 3 HOH A 25 4125 203 HOH HOH . C 3 HOH A 26 4126 14 HOH HOH . C 3 HOH A 27 4127 18 HOH HOH . C 3 HOH A 28 4128 98 HOH HOH . C 3 HOH A 29 4129 119 HOH HOH . C 3 HOH A 30 4130 181 HOH HOH . C 3 HOH A 31 4131 138 HOH HOH . C 3 HOH A 32 4132 20 HOH HOH . C 3 HOH A 33 4133 80 HOH HOH . C 3 HOH A 34 4134 115 HOH HOH . C 3 HOH A 35 4135 71 HOH HOH . C 3 HOH A 36 4136 197 HOH HOH . C 3 HOH A 37 4137 144 HOH HOH . C 3 HOH A 38 4138 126 HOH HOH . C 3 HOH A 39 4139 162 HOH HOH . C 3 HOH A 40 4140 154 HOH HOH . C 3 HOH A 41 4141 34 HOH HOH . C 3 HOH A 42 4142 24 HOH HOH . C 3 HOH A 43 4143 137 HOH HOH . C 3 HOH A 44 4144 201 HOH HOH . C 3 HOH A 45 4145 48 HOH HOH . C 3 HOH A 46 4146 148 HOH HOH . C 3 HOH A 47 4147 11 HOH HOH . C 3 HOH A 48 4148 110 HOH HOH . C 3 HOH A 49 4149 149 HOH HOH . C 3 HOH A 50 4150 129 HOH HOH . C 3 HOH A 51 4151 214 HOH HOH . C 3 HOH A 52 4152 106 HOH HOH . C 3 HOH A 53 4153 176 HOH HOH . C 3 HOH A 54 4154 37 HOH HOH . C 3 HOH A 55 4155 226 HOH HOH . C 3 HOH A 56 4156 131 HOH HOH . C 3 HOH A 57 4157 87 HOH HOH . C 3 HOH A 58 4158 27 HOH HOH . C 3 HOH A 59 4159 15 HOH HOH . C 3 HOH A 60 4160 108 HOH HOH . C 3 HOH A 61 4161 1 HOH HOH . C 3 HOH A 62 4162 31 HOH HOH . C 3 HOH A 63 4163 61 HOH HOH . C 3 HOH A 64 4164 234 HOH HOH . C 3 HOH A 65 4165 184 HOH HOH . C 3 HOH A 66 4166 133 HOH HOH . C 3 HOH A 67 4167 53 HOH HOH . C 3 HOH A 68 4168 79 HOH HOH . C 3 HOH A 69 4169 39 HOH HOH . C 3 HOH A 70 4170 182 HOH HOH . C 3 HOH A 71 4171 134 HOH HOH . C 3 HOH A 72 4172 5 HOH HOH . C 3 HOH A 73 4173 179 HOH HOH . C 3 HOH A 74 4174 43 HOH HOH . C 3 HOH A 75 4175 66 HOH HOH . C 3 HOH A 76 4176 56 HOH HOH . C 3 HOH A 77 4177 16 HOH HOH . C 3 HOH A 78 4178 146 HOH HOH . C 3 HOH A 79 4179 210 HOH HOH . C 3 HOH A 80 4180 92 HOH HOH . C 3 HOH A 81 4181 97 HOH HOH . C 3 HOH A 82 4182 109 HOH HOH . C 3 HOH A 83 4183 198 HOH HOH . C 3 HOH A 84 4184 28 HOH HOH . C 3 HOH A 85 4185 196 HOH HOH . C 3 HOH A 86 4186 205 HOH HOH . C 3 HOH A 87 4187 33 HOH HOH . C 3 HOH A 88 4188 52 HOH HOH . C 3 HOH A 89 4189 125 HOH HOH . C 3 HOH A 90 4190 202 HOH HOH . C 3 HOH A 91 4191 178 HOH HOH . C 3 HOH A 92 4192 74 HOH HOH . C 3 HOH A 93 4193 160 HOH HOH . C 3 HOH A 94 4194 187 HOH HOH . C 3 HOH A 95 4195 82 HOH HOH . C 3 HOH A 96 4196 13 HOH HOH . C 3 HOH A 97 4197 8 HOH HOH . C 3 HOH A 98 4198 73 HOH HOH . C 3 HOH A 99 4199 216 HOH HOH . C 3 HOH A 100 4200 104 HOH HOH . C 3 HOH A 101 4201 118 HOH HOH . C 3 HOH A 102 4202 204 HOH HOH . C 3 HOH A 103 4203 206 HOH HOH . C 3 HOH A 104 4204 132 HOH HOH . C 3 HOH A 105 4205 23 HOH HOH . C 3 HOH A 106 4206 29 HOH HOH . C 3 HOH A 107 4207 99 HOH HOH . C 3 HOH A 108 4208 17 HOH HOH . C 3 HOH A 109 4209 153 HOH HOH . C 3 HOH A 110 4210 124 HOH HOH . C 3 HOH A 111 4211 35 HOH HOH . C 3 HOH A 112 4212 3 HOH HOH . C 3 HOH A 113 4213 163 HOH HOH . C 3 HOH A 114 4214 140 HOH HOH . C 3 HOH A 115 4215 4 HOH HOH . C 3 HOH A 116 4216 88 HOH HOH . C 3 HOH A 117 4217 55 HOH HOH . C 3 HOH A 118 4218 2 HOH HOH . C 3 HOH A 119 4219 93 HOH HOH . C 3 HOH A 120 4220 142 HOH HOH . C 3 HOH A 121 4221 72 HOH HOH . C 3 HOH A 122 4222 141 HOH HOH . C 3 HOH A 123 4223 6 HOH HOH . C 3 HOH A 124 4224 156 HOH HOH . C 3 HOH A 125 4225 65 HOH HOH . C 3 HOH A 126 4226 128 HOH HOH . C 3 HOH A 127 4227 105 HOH HOH . C 3 HOH A 128 4228 111 HOH HOH . C 3 HOH A 129 4229 47 HOH HOH . C 3 HOH A 130 4230 116 HOH HOH . C 3 HOH A 131 4231 101 HOH HOH . C 3 HOH A 132 4232 170 HOH HOH . C 3 HOH A 133 4233 50 HOH HOH . C 3 HOH A 134 4234 7 HOH HOH . C 3 HOH A 135 4235 212 HOH HOH . C 3 HOH A 136 4236 232 HOH HOH . C 3 HOH A 137 4237 235 HOH HOH . C 3 HOH A 138 4238 42 HOH HOH . C 3 HOH A 139 4239 155 HOH HOH . C 3 HOH A 140 4240 209 HOH HOH . C 3 HOH A 141 4241 58 HOH HOH . C 3 HOH A 142 4242 188 HOH HOH . C 3 HOH A 143 4243 36 HOH HOH . C 3 HOH A 144 4244 19 HOH HOH . C 3 HOH A 145 4245 194 HOH HOH . C 3 HOH A 146 4246 83 HOH HOH . C 3 HOH A 147 4247 112 HOH HOH . C 3 HOH A 148 4248 70 HOH HOH . C 3 HOH A 149 4249 183 HOH HOH . C 3 HOH A 150 4250 158 HOH HOH . C 3 HOH A 151 4251 38 HOH HOH . C 3 HOH A 152 4252 12 HOH HOH . C 3 HOH A 153 4253 49 HOH HOH . C 3 HOH A 154 4254 44 HOH HOH . C 3 HOH A 155 4255 26 HOH HOH . C 3 HOH A 156 4256 75 HOH HOH . C 3 HOH A 157 4257 96 HOH HOH . C 3 HOH A 158 4258 9 HOH HOH . C 3 HOH A 159 4259 152 HOH HOH . C 3 HOH A 160 4260 191 HOH HOH . C 3 HOH A 161 4261 200 HOH HOH . C 3 HOH A 162 4262 185 HOH HOH . C 3 HOH A 163 4263 59 HOH HOH . C 3 HOH A 164 4264 150 HOH HOH . C 3 HOH A 165 4265 121 HOH HOH . C 3 HOH A 166 4266 113 HOH HOH . C 3 HOH A 167 4267 147 HOH HOH . C 3 HOH A 168 4268 117 HOH HOH . C 3 HOH A 169 4269 85 HOH HOH . C 3 HOH A 170 4270 63 HOH HOH . C 3 HOH A 171 4271 136 HOH HOH . C 3 HOH A 172 4272 30 HOH HOH . C 3 HOH A 173 4273 236 HOH HOH . C 3 HOH A 174 4274 68 HOH HOH . C 3 HOH A 175 4275 51 HOH HOH . C 3 HOH A 176 4276 190 HOH HOH . C 3 HOH A 177 4277 211 HOH HOH . C 3 HOH A 178 4278 139 HOH HOH . C 3 HOH A 179 4279 208 HOH HOH . C 3 HOH A 180 4280 230 HOH HOH . C 3 HOH A 181 4281 223 HOH HOH . C 3 HOH A 182 4282 91 HOH HOH . C 3 HOH A 183 4283 95 HOH HOH . C 3 HOH A 184 4284 102 HOH HOH . C 3 HOH A 185 4285 199 HOH HOH . C 3 HOH A 186 4286 157 HOH HOH . C 3 HOH A 187 4287 172 HOH HOH . C 3 HOH A 188 4288 207 HOH HOH . C 3 HOH A 189 4289 143 HOH HOH . C 3 HOH A 190 4290 218 HOH HOH . C 3 HOH A 191 4291 228 HOH HOH . C 3 HOH A 192 4292 217 HOH HOH . C 3 HOH A 193 4293 159 HOH HOH . C 3 HOH A 194 4294 227 HOH HOH . C 3 HOH A 195 4295 222 HOH HOH . C 3 HOH A 196 4296 213 HOH HOH . C 3 HOH A 197 4297 81 HOH HOH . C 3 HOH A 198 4298 130 HOH HOH . C 3 HOH A 199 4299 220 HOH HOH . C 3 HOH A 200 4300 62 HOH HOH . C 3 HOH A 201 4301 192 HOH HOH . C 3 HOH A 202 4302 40 HOH HOH . C 3 HOH A 203 4303 175 HOH HOH . C 3 HOH A 204 4304 225 HOH HOH . C 3 HOH A 205 4305 165 HOH HOH . C 3 HOH A 206 4306 90 HOH HOH . C 3 HOH A 207 4307 46 HOH HOH . C 3 HOH A 208 4308 231 HOH HOH . C 3 HOH A 209 4309 161 HOH HOH . C 3 HOH A 210 4310 233 HOH HOH . C 3 HOH A 211 4311 173 HOH HOH . C 3 HOH A 212 4312 107 HOH HOH . C 3 HOH A 213 4313 168 HOH HOH . C 3 HOH A 214 4314 167 HOH HOH . C 3 HOH A 215 4315 76 HOH HOH . C 3 HOH A 216 4316 166 HOH HOH . C 3 HOH A 217 4317 221 HOH HOH . C 3 HOH A 218 4318 123 HOH HOH . C 3 HOH A 219 4319 174 HOH HOH . C 3 HOH A 220 4320 195 HOH HOH . C 3 HOH A 221 4321 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 50F . . . B 2 8.82 10.328 32.193 1 11.38 ? C4 50F 4000 A 1 HETATM 2 C C5 50F . . . B 2 7.587 9.713 32.449 1 12.86 ? C5 50F 4000 A 1 HETATM 3 C C6 50F . . . B 2 7.606 8.463 33.064 1 11.98 ? C6 50F 4000 A 1 HETATM 4 C C11 50F . . . B 2 8.173 13.885 30.821 1 9.09 ? C11 50F 4000 A 1 HETATM 5 C C7 50F . . . B 2 6.369 7.816 33.412 1 14.83 ? C7 50F 4000 A 1 HETATM 6 C C10 50F . . . B 2 8.017 12.568 31.267 1 9.87 ? C10 50F 4000 A 1 HETATM 7 C C12 50F . . . B 2 6.919 14.342 30.499 1 12.26 ? C12 50F 4000 A 1 HETATM 8 N N3 50F . . . B 2 10.002 9.734 32.443 1 10.46 ? N3 50F 4000 A 1 HETATM 9 C C1 50F . . . B 2 8.819 7.853 33.348 1 9.26 ? C1 50F 4000 A 1 HETATM 10 C C2 50F . . . B 2 9.978 8.514 33.002 1 8.27 ? C2 50F 4000 A 1 HETATM 11 N N8 50F . . . B 2 5.405 7.274 33.689 1 18.94 ? N8 50F 4000 A 1 HETATM 12 N N9 50F . . . B 2 8.956 11.637 31.706 1 8.07 ? N9 50F 4000 A 1 HETATM 13 N N13 50F . . . B 2 6.032 13.309 30.74 1 12.21 ? N13 50F 4000 A 1 HETATM 14 N N14 50F . . . B 2 6.685 12.19 31.216 1 13.95 ? N14 50F 4000 A 1 HETATM 15 C C15 50F . . . B 2 4.576 13.294 30.534 1 13.53 ? C15 50F 4000 A 1 HETATM 16 C C16 50F . . . B 2 4.196 12.266 29.477 1 16.15 ? C16 50F 4000 A 1 HETATM 17 C C17 50F . . . B 2 3.027 11.505 30.076 1 18.42 ? C17 50F 4000 A 1 HETATM 18 C C18 50F . . . B 2 2.581 12.249 31.328 1 18.95 ? C18 50F 4000 A 1 HETATM 19 C C19 50F . . . B 2 3.783 13.019 31.806 1 15.9 ? C19 50F 4000 A 1 HETATM 20 C C20 50F . . . B 2 6.501 15.713 30.025 1 16.74 ? C20 50F 4000 A 1 HETATM 21 C C21 50F . . . B 2 6.539 15.821 28.5 1 19.86 ? C21 50F 4000 A 1 HETATM 22 C C22 50F . . . B 2 5.954 17.179 28.083 1 22.78 ? C22 50F 4000 A 1 HETATM 23 N N23 50F . . . B 2 6.673 18.309 28.705 1 20.96 ? N23 50F 4000 A 1 HETATM 24 C C24 50F . . . B 2 6.679 18.19 30.176 1 20.39 ? C24 50F 4000 A 1 HETATM 25 C C25 50F . . . B 2 7.307 16.869 30.637 1 21.68 ? C25 50F 4000 A 1 HETATM 26 C C26 50F . . . B 2 6.182 19.625 28.247 1 23.52 ? C26 50F 4000 A 1 HETATM 27 C C27 50F . . . B 2 7.103 20.859 28.624 1 24.84 ? C27 50F 4000 A 1 HETATM 28 O O28 50F . . . B 2 7.632 20.874 27.296 1 26 ? O28 50F 4000 A 1 HETATM 29 C C29 50F . . . B 2 6.613 20.022 26.766 1 25.37 ? C29 50F 4000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #