data_5CEX # _model_server_result.job_id AsOzBtyYb_FZYVc_osHCaQ _model_server_result.datetime_utc '2024-10-18 22:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":306}' # _entry.id 5CEX # _exptl.entry_id 5CEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.35 _cell.angle_gamma 90 _cell.entry_id 5CEX _cell.length_a 70.952 _cell.length_b 108.726 _cell.length_c 72.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,O,P 1 1 C,D,H,I,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 140 A CYS 135 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 159 B CYS 138 1_555 B SG CYS 215 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 22 C CYS 23 1_555 C SG CYS 90 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 C SG CYS 140 C CYS 135 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf7 D SG CYS 159 D CYS 138 1_555 D SG CYS 215 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 294 n n O1 HO1 PG4 sing 295 n n C1 C2 PG4 sing 296 n n C1 H11 PG4 sing 297 n n C1 H12 PG4 sing 298 n n C2 O2 PG4 sing 299 n n C2 H21 PG4 sing 300 n n C2 H22 PG4 sing 301 n n O2 C3 PG4 sing 302 n n C3 C4 PG4 sing 303 n n C3 H31 PG4 sing 304 n n C3 H32 PG4 sing 305 n n C4 O3 PG4 sing 306 n n C4 H41 PG4 sing 307 n n C4 H42 PG4 sing 308 n n O3 C5 PG4 sing 309 n n C5 C6 PG4 sing 310 n n C5 H51 PG4 sing 311 n n C5 H52 PG4 sing 312 n n C6 O4 PG4 sing 313 n n C6 H61 PG4 sing 314 n n C6 H62 PG4 sing 315 n n O4 C7 PG4 sing 316 n n C7 C8 PG4 sing 317 n n C7 H71 PG4 sing 318 n n C7 H72 PG4 sing 319 n n C8 O5 PG4 sing 320 n n C8 H81 PG4 sing 321 n n C8 H82 PG4 sing 322 n n O5 HO5 PG4 sing 323 n n # _atom_sites.entry_id 5CEX _atom_sites.fract_transf_matrix[1][1] 0.014094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000332 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PG4 A 1 301 2 PG4 PG4 . F 4 GOL B 1 301 1 GOL GOL . G 5 P6G B 1 302 2 P6G P6G . H 4 GOL C 1 301 2 GOL GOL . I 4 GOL C 1 302 3 GOL GOL . J 4 GOL C 1 303 4 GOL GOL . K 5 P6G C 1 304 1 P6G P6G . L 3 PG4 C 1 305 1 PG4 PG4 . M 3 PG4 C 1 306 3 PG4 PG4 . N 6 PGE C 1 307 1 PGE PGE . O 7 HOH A 1 401 184 HOH HOH . O 7 HOH A 2 402 255 HOH HOH . O 7 HOH A 3 403 129 HOH HOH . O 7 HOH A 4 404 101 HOH HOH . O 7 HOH A 5 405 117 HOH HOH . O 7 HOH A 6 406 208 HOH HOH . O 7 HOH A 7 407 127 HOH HOH . O 7 HOH A 8 408 65 HOH HOH . O 7 HOH A 9 409 67 HOH HOH . O 7 HOH A 10 410 16 HOH HOH . O 7 HOH A 11 411 5 HOH HOH . O 7 HOH A 12 412 3 HOH HOH . O 7 HOH A 13 413 74 HOH HOH . O 7 HOH A 14 414 6 HOH HOH . O 7 HOH A 15 415 24 HOH HOH . O 7 HOH A 16 416 215 HOH HOH . O 7 HOH A 17 417 265 HOH HOH . O 7 HOH A 18 418 105 HOH HOH . O 7 HOH A 19 419 154 HOH HOH . O 7 HOH A 20 420 169 HOH HOH . O 7 HOH A 21 421 8 HOH HOH . O 7 HOH A 22 422 166 HOH HOH . O 7 HOH A 23 423 250 HOH HOH . O 7 HOH A 24 424 174 HOH HOH . O 7 HOH A 25 425 95 HOH HOH . O 7 HOH A 26 426 7 HOH HOH . O 7 HOH A 27 427 99 HOH HOH . O 7 HOH A 28 428 60 HOH HOH . O 7 HOH A 29 429 63 HOH HOH . O 7 HOH A 30 430 107 HOH HOH . O 7 HOH A 31 431 246 HOH HOH . O 7 HOH A 32 432 275 HOH HOH . O 7 HOH A 33 433 266 HOH HOH . O 7 HOH A 34 434 69 HOH HOH . O 7 HOH A 35 435 257 HOH HOH . O 7 HOH A 36 436 240 HOH HOH . O 7 HOH A 37 437 185 HOH HOH . O 7 HOH A 38 438 227 HOH HOH . O 7 HOH A 39 439 287 HOH HOH . O 7 HOH A 40 440 242 HOH HOH . O 7 HOH A 41 441 301 HOH HOH . O 7 HOH A 42 442 305 HOH HOH . O 7 HOH A 43 443 284 HOH HOH . O 7 HOH A 44 444 228 HOH HOH . O 7 HOH A 45 445 219 HOH HOH . O 7 HOH A 46 446 110 HOH HOH . O 7 HOH A 47 447 224 HOH HOH . O 7 HOH A 48 448 293 HOH HOH . O 7 HOH A 49 449 307 HOH HOH . O 7 HOH A 50 450 296 HOH HOH . P 7 HOH B 1 401 280 HOH HOH . P 7 HOH B 2 402 44 HOH HOH . P 7 HOH B 3 403 13 HOH HOH . P 7 HOH B 4 404 9 HOH HOH . P 7 HOH B 5 405 149 HOH HOH . P 7 HOH B 6 406 81 HOH HOH . P 7 HOH B 7 407 2 HOH HOH . P 7 HOH B 8 408 147 HOH HOH . P 7 HOH B 9 409 161 HOH HOH . P 7 HOH B 10 410 61 HOH HOH . P 7 HOH B 11 411 182 HOH HOH . P 7 HOH B 12 412 11 HOH HOH . P 7 HOH B 13 413 54 HOH HOH . P 7 HOH B 14 414 32 HOH HOH . P 7 HOH B 15 415 201 HOH HOH . P 7 HOH B 16 416 10 HOH HOH . P 7 HOH B 17 417 253 HOH HOH . P 7 HOH B 18 418 26 HOH HOH . P 7 HOH B 19 419 115 HOH HOH . P 7 HOH B 20 420 92 HOH HOH . P 7 HOH B 21 421 122 HOH HOH . P 7 HOH B 22 422 123 HOH HOH . P 7 HOH B 23 423 232 HOH HOH . P 7 HOH B 24 424 267 HOH HOH . P 7 HOH B 25 425 188 HOH HOH . P 7 HOH B 26 426 252 HOH HOH . P 7 HOH B 27 427 264 HOH HOH . P 7 HOH B 28 428 42 HOH HOH . P 7 HOH B 29 429 18 HOH HOH . P 7 HOH B 30 430 249 HOH HOH . P 7 HOH B 31 431 98 HOH HOH . P 7 HOH B 32 432 292 HOH HOH . P 7 HOH B 33 433 46 HOH HOH . P 7 HOH B 34 434 310 HOH HOH . P 7 HOH B 35 435 283 HOH HOH . P 7 HOH B 36 436 298 HOH HOH . P 7 HOH B 37 437 245 HOH HOH . P 7 HOH B 38 438 136 HOH HOH . P 7 HOH B 39 439 153 HOH HOH . P 7 HOH B 40 440 295 HOH HOH . P 7 HOH B 41 441 290 HOH HOH . P 7 HOH B 42 442 150 HOH HOH . P 7 HOH B 43 443 237 HOH HOH . P 7 HOH B 44 444 294 HOH HOH . P 7 HOH B 45 445 289 HOH HOH . P 7 HOH B 46 446 222 HOH HOH . Q 7 HOH C 1 401 34 HOH HOH . Q 7 HOH C 2 402 55 HOH HOH . Q 7 HOH C 3 403 157 HOH HOH . Q 7 HOH C 4 404 53 HOH HOH . Q 7 HOH C 5 405 23 HOH HOH . Q 7 HOH C 6 406 124 HOH HOH . Q 7 HOH C 7 407 140 HOH HOH . Q 7 HOH C 8 408 58 HOH HOH . Q 7 HOH C 9 409 142 HOH HOH . Q 7 HOH C 10 410 64 HOH HOH . Q 7 HOH C 11 411 37 HOH HOH . Q 7 HOH C 12 412 48 HOH HOH . Q 7 HOH C 13 413 29 HOH HOH . Q 7 HOH C 14 414 158 HOH HOH . Q 7 HOH C 15 415 15 HOH HOH . Q 7 HOH C 16 416 90 HOH HOH . Q 7 HOH C 17 417 233 HOH HOH . Q 7 HOH C 18 418 176 HOH HOH . Q 7 HOH C 19 419 197 HOH HOH . Q 7 HOH C 20 420 22 HOH HOH . Q 7 HOH C 21 421 272 HOH HOH . Q 7 HOH C 22 422 180 HOH HOH . Q 7 HOH C 23 423 236 HOH HOH . Q 7 HOH C 24 424 14 HOH HOH . Q 7 HOH C 25 425 83 HOH HOH . Q 7 HOH C 26 426 119 HOH HOH . Q 7 HOH C 27 427 75 HOH HOH . Q 7 HOH C 28 428 52 HOH HOH . Q 7 HOH C 29 429 25 HOH HOH . Q 7 HOH C 30 430 70 HOH HOH . Q 7 HOH C 31 431 43 HOH HOH . Q 7 HOH C 32 432 96 HOH HOH . Q 7 HOH C 33 433 84 HOH HOH . Q 7 HOH C 34 434 204 HOH HOH . Q 7 HOH C 35 435 59 HOH HOH . Q 7 HOH C 36 436 128 HOH HOH . Q 7 HOH C 37 437 28 HOH HOH . Q 7 HOH C 38 438 243 HOH HOH . Q 7 HOH C 39 439 31 HOH HOH . Q 7 HOH C 40 440 30 HOH HOH . Q 7 HOH C 41 441 106 HOH HOH . Q 7 HOH C 42 442 36 HOH HOH . Q 7 HOH C 43 443 151 HOH HOH . Q 7 HOH C 44 444 146 HOH HOH . Q 7 HOH C 45 445 177 HOH HOH . Q 7 HOH C 46 446 94 HOH HOH . Q 7 HOH C 47 447 87 HOH HOH . Q 7 HOH C 48 448 229 HOH HOH . Q 7 HOH C 49 449 88 HOH HOH . Q 7 HOH C 50 450 203 HOH HOH . Q 7 HOH C 51 451 226 HOH HOH . Q 7 HOH C 52 452 80 HOH HOH . Q 7 HOH C 53 453 288 HOH HOH . Q 7 HOH C 54 454 261 HOH HOH . Q 7 HOH C 55 455 276 HOH HOH . Q 7 HOH C 56 456 89 HOH HOH . Q 7 HOH C 57 457 148 HOH HOH . Q 7 HOH C 58 458 281 HOH HOH . Q 7 HOH C 59 459 68 HOH HOH . Q 7 HOH C 60 460 306 HOH HOH . Q 7 HOH C 61 461 100 HOH HOH . Q 7 HOH C 62 462 297 HOH HOH . Q 7 HOH C 63 463 300 HOH HOH . Q 7 HOH C 64 464 254 HOH HOH . Q 7 HOH C 65 465 175 HOH HOH . Q 7 HOH C 66 466 231 HOH HOH . Q 7 HOH C 67 467 299 HOH HOH . R 7 HOH D 1 301 268 HOH HOH . R 7 HOH D 2 302 41 HOH HOH . R 7 HOH D 3 303 216 HOH HOH . R 7 HOH D 4 304 50 HOH HOH . R 7 HOH D 5 305 12 HOH HOH . R 7 HOH D 6 306 51 HOH HOH . R 7 HOH D 7 307 126 HOH HOH . R 7 HOH D 8 308 225 HOH HOH . R 7 HOH D 9 309 104 HOH HOH . R 7 HOH D 10 310 19 HOH HOH . R 7 HOH D 11 311 76 HOH HOH . R 7 HOH D 12 312 125 HOH HOH . R 7 HOH D 13 313 4 HOH HOH . R 7 HOH D 14 314 192 HOH HOH . R 7 HOH D 15 315 137 HOH HOH . R 7 HOH D 16 316 93 HOH HOH . R 7 HOH D 17 317 159 HOH HOH . R 7 HOH D 18 318 79 HOH HOH . R 7 HOH D 19 319 1 HOH HOH . R 7 HOH D 20 320 162 HOH HOH . R 7 HOH D 21 321 200 HOH HOH . R 7 HOH D 22 322 152 HOH HOH . R 7 HOH D 23 323 131 HOH HOH . R 7 HOH D 24 324 271 HOH HOH . R 7 HOH D 25 325 262 HOH HOH . R 7 HOH D 26 326 113 HOH HOH . R 7 HOH D 27 327 248 HOH HOH . R 7 HOH D 28 328 78 HOH HOH . R 7 HOH D 29 329 35 HOH HOH . R 7 HOH D 30 330 132 HOH HOH . R 7 HOH D 31 331 72 HOH HOH . R 7 HOH D 32 332 82 HOH HOH . R 7 HOH D 33 333 164 HOH HOH . R 7 HOH D 34 334 144 HOH HOH . R 7 HOH D 35 335 213 HOH HOH . R 7 HOH D 36 336 260 HOH HOH . R 7 HOH D 37 337 199 HOH HOH . R 7 HOH D 38 338 274 HOH HOH . R 7 HOH D 39 339 108 HOH HOH . R 7 HOH D 40 340 202 HOH HOH . R 7 HOH D 41 341 85 HOH HOH . R 7 HOH D 42 342 309 HOH HOH . R 7 HOH D 43 343 308 HOH HOH . R 7 HOH D 44 344 302 HOH HOH . R 7 HOH D 45 345 269 HOH HOH . R 7 HOH D 46 346 111 HOH HOH . R 7 HOH D 47 347 291 HOH HOH . R 7 HOH D 48 348 285 HOH HOH . R 7 HOH D 49 349 241 HOH HOH . R 7 HOH D 50 350 279 HOH HOH . R 7 HOH D 51 351 304 HOH HOH . R 7 HOH D 52 352 286 HOH HOH . R 7 HOH D 53 353 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . M 3 -12.726 11.202 12.291 1 53.02 ? O1 PG4 306 C 1 HETATM 2 C C1 PG4 . . . M 3 -13.284 10.886 11.011 1 48.19 ? C1 PG4 306 C 1 HETATM 3 C C2 PG4 . . . M 3 -12.283 11.174 9.9 1 49.23 ? C2 PG4 306 C 1 HETATM 4 O O2 PG4 . . . M 3 -12.655 10.505 8.698 1 52.32 ? O2 PG4 306 C 1 HETATM 5 C C3 PG4 . . . M 3 -13.776 11.101 8.063 1 47.19 ? C3 PG4 306 C 1 HETATM 6 C C4 PG4 . . . M 3 -13.845 10.667 6.608 1 43.98 ? C4 PG4 306 C 1 HETATM 7 O O3 PG4 . . . M 3 -15.187 10.358 6.258 1 56.32 ? O3 PG4 306 C 1 HETATM 8 C C5 PG4 . . . M 3 -15.748 11.304 5.357 1 50.04 ? C5 PG4 306 C 1 HETATM 9 C C6 PG4 . . . M 3 -17.249 11.383 5.573 1 46.01 ? C6 PG4 306 C 1 HETATM 10 O O4 PG4 . . . M 3 -17.636 12.75 5.532 1 63.92 ? O4 PG4 306 C 1 HETATM 11 C C7 PG4 . . . M 3 -18.595 13.093 6.53 1 52.95 ? C7 PG4 306 C 1 HETATM 12 C C8 PG4 . . . M 3 -19.335 14.352 6.093 1 51.94 ? C8 PG4 306 C 1 HETATM 13 O O5 PG4 . . . M 3 -20.564 14.461 6.803 1 51.18 ? O5 PG4 306 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #