data_5CEY # _model_server_result.job_id tUm26eYZqyAt0ZBSUs-SYg _model_server_result.datetime_utc '2024-11-23 03:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5CEY # _exptl.entry_id 5CEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CEY _cell.length_a 40.736 _cell.length_b 338.146 _cell.length_c 62.115 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 140 A CYS 135 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 159 B CYS 138 1_555 B SG CYS 215 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? disulf ? disulf4 C SG CYS 22 C CYS 23 1_555 C SG CYS 90 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? disulf ? disulf5 C SG CYS 140 C CYS 135 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CEY _atom_sites.fract_transf_matrix[1][1] 0.024548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 2 GOL GOL . F 4 P6G B 1 301 1 P6G P6G . G 3 GOL C 1 301 1 GOL GOL . H 5 PE7 D 1 301 1 PE7 PE7 . I 6 HOH A 1 401 63 HOH HOH . I 6 HOH A 2 402 8 HOH HOH . I 6 HOH A 3 403 26 HOH HOH . I 6 HOH A 4 404 75 HOH HOH . I 6 HOH A 5 405 90 HOH HOH . I 6 HOH A 6 406 111 HOH HOH . I 6 HOH A 7 407 27 HOH HOH . I 6 HOH A 8 408 158 HOH HOH . I 6 HOH A 9 409 91 HOH HOH . I 6 HOH A 10 410 54 HOH HOH . I 6 HOH A 11 411 59 HOH HOH . I 6 HOH A 12 412 100 HOH HOH . I 6 HOH A 13 413 39 HOH HOH . I 6 HOH A 14 414 148 HOH HOH . I 6 HOH A 15 415 20 HOH HOH . I 6 HOH A 16 416 141 HOH HOH . I 6 HOH A 17 417 184 HOH HOH . I 6 HOH A 18 418 124 HOH HOH . I 6 HOH A 19 419 122 HOH HOH . I 6 HOH A 20 420 221 HOH HOH . I 6 HOH A 21 421 14 HOH HOH . I 6 HOH A 22 422 80 HOH HOH . I 6 HOH A 23 423 198 HOH HOH . I 6 HOH A 24 424 36 HOH HOH . I 6 HOH A 25 425 152 HOH HOH . I 6 HOH A 26 426 83 HOH HOH . I 6 HOH A 27 427 66 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 70 HOH HOH . J 6 HOH B 1 401 103 HOH HOH . J 6 HOH B 2 402 182 HOH HOH . J 6 HOH B 3 403 79 HOH HOH . J 6 HOH B 4 404 38 HOH HOH . J 6 HOH B 5 405 120 HOH HOH . J 6 HOH B 6 406 22 HOH HOH . J 6 HOH B 7 407 24 HOH HOH . J 6 HOH B 8 408 33 HOH HOH . J 6 HOH B 9 409 108 HOH HOH . J 6 HOH B 10 410 3 HOH HOH . J 6 HOH B 11 411 57 HOH HOH . J 6 HOH B 12 412 13 HOH HOH . J 6 HOH B 13 413 178 HOH HOH . J 6 HOH B 14 414 107 HOH HOH . J 6 HOH B 15 415 29 HOH HOH . J 6 HOH B 16 416 116 HOH HOH . J 6 HOH B 17 417 2 HOH HOH . J 6 HOH B 18 418 138 HOH HOH . J 6 HOH B 19 419 133 HOH HOH . J 6 HOH B 20 420 46 HOH HOH . J 6 HOH B 21 421 200 HOH HOH . J 6 HOH B 22 422 159 HOH HOH . J 6 HOH B 23 423 171 HOH HOH . J 6 HOH B 24 424 163 HOH HOH . J 6 HOH B 25 425 185 HOH HOH . K 6 HOH C 1 401 28 HOH HOH . K 6 HOH C 2 402 71 HOH HOH . K 6 HOH C 3 403 17 HOH HOH . K 6 HOH C 4 404 56 HOH HOH . K 6 HOH C 5 405 61 HOH HOH . K 6 HOH C 6 406 64 HOH HOH . K 6 HOH C 7 407 68 HOH HOH . K 6 HOH C 8 408 32 HOH HOH . K 6 HOH C 9 409 52 HOH HOH . K 6 HOH C 10 410 16 HOH HOH . K 6 HOH C 11 411 4 HOH HOH . K 6 HOH C 12 412 49 HOH HOH . K 6 HOH C 13 413 85 HOH HOH . K 6 HOH C 14 414 121 HOH HOH . K 6 HOH C 15 415 98 HOH HOH . K 6 HOH C 16 416 1 HOH HOH . K 6 HOH C 17 417 137 HOH HOH . K 6 HOH C 18 418 19 HOH HOH . K 6 HOH C 19 419 135 HOH HOH . K 6 HOH C 20 420 9 HOH HOH . K 6 HOH C 21 421 18 HOH HOH . K 6 HOH C 22 422 222 HOH HOH . K 6 HOH C 23 423 106 HOH HOH . K 6 HOH C 24 424 92 HOH HOH . K 6 HOH C 25 425 188 HOH HOH . K 6 HOH C 26 426 195 HOH HOH . K 6 HOH C 27 427 132 HOH HOH . K 6 HOH C 28 428 216 HOH HOH . K 6 HOH C 29 429 214 HOH HOH . L 6 HOH D 1 401 110 HOH HOH . L 6 HOH D 2 402 211 HOH HOH . L 6 HOH D 3 403 12 HOH HOH . L 6 HOH D 4 404 6 HOH HOH . L 6 HOH D 5 405 10 HOH HOH . L 6 HOH D 6 406 192 HOH HOH . L 6 HOH D 7 407 21 HOH HOH . L 6 HOH D 8 408 43 HOH HOH . L 6 HOH D 9 409 136 HOH HOH . L 6 HOH D 10 410 118 HOH HOH . L 6 HOH D 11 411 129 HOH HOH . L 6 HOH D 12 412 217 HOH HOH . L 6 HOH D 13 413 207 HOH HOH . L 6 HOH D 14 414 209 HOH HOH . L 6 HOH D 15 415 105 HOH HOH . L 6 HOH D 16 416 58 HOH HOH . L 6 HOH D 17 417 44 HOH HOH . L 6 HOH D 18 418 48 HOH HOH . L 6 HOH D 19 419 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -21.569 -77.504 -7.926 1 20 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 3 -20.368 -76.738 -7.793 1 20 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 3 -22.442 -77.334 -6.696 1 20 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 3 -23.721 -77.898 -6.958 1 20 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 3 -21.8 -78.014 -5.488 1 20 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 3 -22.164 -79.394 -5.405 1 20 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #