data_5CEY # _model_server_result.job_id lSldE-iEYhT9IaFKI1WUnw _model_server_result.datetime_utc '2024-11-23 04:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5CEY # _exptl.entry_id 5CEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CEY _cell.length_a 40.736 _cell.length_b 338.146 _cell.length_c 62.115 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 140 A CYS 135 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 159 B CYS 138 1_555 B SG CYS 215 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? disulf ? disulf4 C SG CYS 22 C CYS 23 1_555 C SG CYS 90 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? disulf ? disulf5 C SG CYS 140 C CYS 135 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 250 n n O1 H1 P6G sing 251 n n C2 C3 P6G sing 252 n n C2 H21 P6G sing 253 n n C2 H22 P6G sing 254 n n C3 O4 P6G sing 255 n n C3 H31 P6G sing 256 n n C3 H32 P6G sing 257 n n O4 C5 P6G sing 258 n n C5 C6 P6G sing 259 n n C5 H51 P6G sing 260 n n C5 H52 P6G sing 261 n n C6 O7 P6G sing 262 n n C6 H61 P6G sing 263 n n C6 H62 P6G sing 264 n n O7 C8 P6G sing 265 n n C8 C9 P6G sing 266 n n C8 H81 P6G sing 267 n n C8 H82 P6G sing 268 n n C9 O10 P6G sing 269 n n C9 H91 P6G sing 270 n n C9 H92 P6G sing 271 n n O10 C11 P6G sing 272 n n C11 C12 P6G sing 273 n n C11 H111 P6G sing 274 n n C11 H112 P6G sing 275 n n C12 O13 P6G sing 276 n n C12 H121 P6G sing 277 n n C12 H122 P6G sing 278 n n O13 C14 P6G sing 279 n n C14 C15 P6G sing 280 n n C14 H141 P6G sing 281 n n C14 H142 P6G sing 282 n n C15 O16 P6G sing 283 n n C15 H151 P6G sing 284 n n C15 H152 P6G sing 285 n n O16 C17 P6G sing 286 n n C17 C18 P6G sing 287 n n C17 H171 P6G sing 288 n n C17 H172 P6G sing 289 n n C18 O19 P6G sing 290 n n C18 H181 P6G sing 291 n n C18 H182 P6G sing 292 n n O19 H19 P6G sing 293 n n # _atom_sites.entry_id 5CEY _atom_sites.fract_transf_matrix[1][1] 0.024548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 2 GOL GOL . F 4 P6G B 1 301 1 P6G P6G . G 3 GOL C 1 301 1 GOL GOL . H 5 PE7 D 1 301 1 PE7 PE7 . I 6 HOH A 1 401 63 HOH HOH . I 6 HOH A 2 402 8 HOH HOH . I 6 HOH A 3 403 26 HOH HOH . I 6 HOH A 4 404 75 HOH HOH . I 6 HOH A 5 405 90 HOH HOH . I 6 HOH A 6 406 111 HOH HOH . I 6 HOH A 7 407 27 HOH HOH . I 6 HOH A 8 408 158 HOH HOH . I 6 HOH A 9 409 91 HOH HOH . I 6 HOH A 10 410 54 HOH HOH . I 6 HOH A 11 411 59 HOH HOH . I 6 HOH A 12 412 100 HOH HOH . I 6 HOH A 13 413 39 HOH HOH . I 6 HOH A 14 414 148 HOH HOH . I 6 HOH A 15 415 20 HOH HOH . I 6 HOH A 16 416 141 HOH HOH . I 6 HOH A 17 417 184 HOH HOH . I 6 HOH A 18 418 124 HOH HOH . I 6 HOH A 19 419 122 HOH HOH . I 6 HOH A 20 420 221 HOH HOH . I 6 HOH A 21 421 14 HOH HOH . I 6 HOH A 22 422 80 HOH HOH . I 6 HOH A 23 423 198 HOH HOH . I 6 HOH A 24 424 36 HOH HOH . I 6 HOH A 25 425 152 HOH HOH . I 6 HOH A 26 426 83 HOH HOH . I 6 HOH A 27 427 66 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 70 HOH HOH . J 6 HOH B 1 401 103 HOH HOH . J 6 HOH B 2 402 182 HOH HOH . J 6 HOH B 3 403 79 HOH HOH . J 6 HOH B 4 404 38 HOH HOH . J 6 HOH B 5 405 120 HOH HOH . J 6 HOH B 6 406 22 HOH HOH . J 6 HOH B 7 407 24 HOH HOH . J 6 HOH B 8 408 33 HOH HOH . J 6 HOH B 9 409 108 HOH HOH . J 6 HOH B 10 410 3 HOH HOH . J 6 HOH B 11 411 57 HOH HOH . J 6 HOH B 12 412 13 HOH HOH . J 6 HOH B 13 413 178 HOH HOH . J 6 HOH B 14 414 107 HOH HOH . J 6 HOH B 15 415 29 HOH HOH . J 6 HOH B 16 416 116 HOH HOH . J 6 HOH B 17 417 2 HOH HOH . J 6 HOH B 18 418 138 HOH HOH . J 6 HOH B 19 419 133 HOH HOH . J 6 HOH B 20 420 46 HOH HOH . J 6 HOH B 21 421 200 HOH HOH . J 6 HOH B 22 422 159 HOH HOH . J 6 HOH B 23 423 171 HOH HOH . J 6 HOH B 24 424 163 HOH HOH . J 6 HOH B 25 425 185 HOH HOH . K 6 HOH C 1 401 28 HOH HOH . K 6 HOH C 2 402 71 HOH HOH . K 6 HOH C 3 403 17 HOH HOH . K 6 HOH C 4 404 56 HOH HOH . K 6 HOH C 5 405 61 HOH HOH . K 6 HOH C 6 406 64 HOH HOH . K 6 HOH C 7 407 68 HOH HOH . K 6 HOH C 8 408 32 HOH HOH . K 6 HOH C 9 409 52 HOH HOH . K 6 HOH C 10 410 16 HOH HOH . K 6 HOH C 11 411 4 HOH HOH . K 6 HOH C 12 412 49 HOH HOH . K 6 HOH C 13 413 85 HOH HOH . K 6 HOH C 14 414 121 HOH HOH . K 6 HOH C 15 415 98 HOH HOH . K 6 HOH C 16 416 1 HOH HOH . K 6 HOH C 17 417 137 HOH HOH . K 6 HOH C 18 418 19 HOH HOH . K 6 HOH C 19 419 135 HOH HOH . K 6 HOH C 20 420 9 HOH HOH . K 6 HOH C 21 421 18 HOH HOH . K 6 HOH C 22 422 222 HOH HOH . K 6 HOH C 23 423 106 HOH HOH . K 6 HOH C 24 424 92 HOH HOH . K 6 HOH C 25 425 188 HOH HOH . K 6 HOH C 26 426 195 HOH HOH . K 6 HOH C 27 427 132 HOH HOH . K 6 HOH C 28 428 216 HOH HOH . K 6 HOH C 29 429 214 HOH HOH . L 6 HOH D 1 401 110 HOH HOH . L 6 HOH D 2 402 211 HOH HOH . L 6 HOH D 3 403 12 HOH HOH . L 6 HOH D 4 404 6 HOH HOH . L 6 HOH D 5 405 10 HOH HOH . L 6 HOH D 6 406 192 HOH HOH . L 6 HOH D 7 407 21 HOH HOH . L 6 HOH D 8 408 43 HOH HOH . L 6 HOH D 9 409 136 HOH HOH . L 6 HOH D 10 410 118 HOH HOH . L 6 HOH D 11 411 129 HOH HOH . L 6 HOH D 12 412 217 HOH HOH . L 6 HOH D 13 413 207 HOH HOH . L 6 HOH D 14 414 209 HOH HOH . L 6 HOH D 15 415 105 HOH HOH . L 6 HOH D 16 416 58 HOH HOH . L 6 HOH D 17 417 44 HOH HOH . L 6 HOH D 18 418 48 HOH HOH . L 6 HOH D 19 419 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . F 4 -17.955 -52.86 31.105 1 54.84 ? O1 P6G 301 B 1 HETATM 2 C C2 P6G . . . F 4 -19.281 -52.332 31.204 1 56.48 ? C2 P6G 301 B 1 HETATM 3 C C3 P6G . . . F 4 -20.277 -53.242 30.497 1 51.72 ? C3 P6G 301 B 1 HETATM 4 O O4 P6G . . . F 4 -20.513 -52.749 29.187 1 57.98 ? O4 P6G 301 B 1 HETATM 5 C C5 P6G . . . F 4 -21.808 -53.08 28.706 1 52.35 ? C5 P6G 301 B 1 HETATM 6 C C6 P6G . . . F 4 -22.8 -52.018 29.145 1 51.08 ? C6 P6G 301 B 1 HETATM 7 O O7 P6G . . . F 4 -24.126 -52.44 28.851 1 49.26 ? O7 P6G 301 B 1 HETATM 8 C C8 P6G . . . F 4 -24.474 -53.614 29.572 1 43.92 ? C8 P6G 301 B 1 HETATM 9 C C9 P6G . . . F 4 -25.884 -53.507 30.121 1 38.97 ? C9 P6G 301 B 1 HETATM 10 O O10 P6G . . . F 4 -26.219 -54.772 30.662 1 55.67 ? O10 P6G 301 B 1 HETATM 11 C C11 P6G . . . F 4 -26.477 -54.718 32.064 1 52.98 ? C11 P6G 301 B 1 HETATM 12 C C12 P6G . . . F 4 -26.046 -56.009 32.732 1 34.3 ? C12 P6G 301 B 1 HETATM 13 O O13 P6G . . . F 4 -24.644 -55.938 32.957 1 30.72 ? O13 P6G 301 B 1 HETATM 14 C C14 P6G . . . F 4 -24.033 -57.207 32.902 1 38.54 ? C14 P6G 301 B 1 HETATM 15 C C15 P6G . . . F 4 -22.816 -57.195 33.809 1 35.74 ? C15 P6G 301 B 1 HETATM 16 O O16 P6G . . . F 4 -21.832 -56.353 33.241 1 36.88 ? O16 P6G 301 B 1 HETATM 17 C C17 P6G . . . F 4 -20.621 -56.42 33.955 1 42.71 ? C17 P6G 301 B 1 HETATM 18 C C18 P6G . . . F 4 -19.587 -55.578 33.23 1 44.31 ? C18 P6G 301 B 1 HETATM 19 O O19 P6G . . . F 4 -18.848 -56.415 32.347 1 44.45 ? O19 P6G 301 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #