data_5CFE # _model_server_result.job_id R5LlwMQFwAS9lo6WMMx20A _model_server_result.datetime_utc '2024-11-22 05:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5CFE # _exptl.entry_id 5CFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CFE _cell.length_a 52.28 _cell.length_b 61.92 _cell.length_c 73.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 9 A ASN 9 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A OE1 GLU 27 A GLU 27 1_555 F CA CA . A CA 305 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc3 A OE2 GLU 27 A GLU 27 1_555 F CA CA . A CA 305 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OE1 GLU 36 A GLU 36 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 A OE2 GLU 36 A GLU 36 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc6 A OE1 GLU 98 A GLU 98 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 A OE2 GLU 98 A GLU 98 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 A OE1 GLU 195 A GLU 195 1_555 G CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc9 A OE2 GLU 195 A GLU 195 1_555 G CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc10 A OE1 GLU 247 A GLU 247 1_555 F CA CA . A CA 305 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 A OE2 GLU 247 A GLU 247 1_555 F CA CA . A CA 305 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc12 B CA CA . A CA 301 1_555 H O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc13 B CA CA . A CA 301 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc14 B CA CA . A CA 301 1_555 H O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc15 B CA CA . A CA 301 1_555 H O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc16 F CA CA . A CA 305 1_555 H O HOH . A HOH 514 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc17 F CA CA . A CA 305 1_555 H O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc18 G CA CA . A CA 306 1_555 H O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc19 G CA CA . A CA 306 1_555 H O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc20 G CA CA . A CA 306 1_555 H O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 5CFE _atom_sites.fract_transf_matrix[1][1] 0.019128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 PEG A 1 302 1 PEG PEG . D 3 PEG A 1 303 2 PEG PEG . E 3 PEG A 1 304 3 PEG PEG . F 2 CA A 1 305 1 CA CA . G 2 CA A 1 306 1 CA CA . H 4 HOH A 1 401 167 HOH HOH . H 4 HOH A 2 402 132 HOH HOH . H 4 HOH A 3 403 2 HOH HOH . H 4 HOH A 4 404 149 HOH HOH . H 4 HOH A 5 405 117 HOH HOH . H 4 HOH A 6 406 282 HOH HOH . H 4 HOH A 7 407 22 HOH HOH . H 4 HOH A 8 408 225 HOH HOH . H 4 HOH A 9 409 271 HOH HOH . H 4 HOH A 10 410 234 HOH HOH . H 4 HOH A 11 411 30 HOH HOH . H 4 HOH A 12 412 49 HOH HOH . H 4 HOH A 13 413 59 HOH HOH . H 4 HOH A 14 414 276 HOH HOH . H 4 HOH A 15 415 46 HOH HOH . H 4 HOH A 16 416 4 HOH HOH . H 4 HOH A 17 417 168 HOH HOH . H 4 HOH A 18 418 39 HOH HOH . H 4 HOH A 19 419 131 HOH HOH . H 4 HOH A 20 420 164 HOH HOH . H 4 HOH A 21 421 208 HOH HOH . H 4 HOH A 22 422 213 HOH HOH . H 4 HOH A 23 423 75 HOH HOH . H 4 HOH A 24 424 185 HOH HOH . H 4 HOH A 25 425 221 HOH HOH . H 4 HOH A 26 426 26 HOH HOH . H 4 HOH A 27 427 20 HOH HOH . H 4 HOH A 28 428 86 HOH HOH . H 4 HOH A 29 429 115 HOH HOH . H 4 HOH A 30 430 161 HOH HOH . H 4 HOH A 31 431 21 HOH HOH . H 4 HOH A 32 432 31 HOH HOH . H 4 HOH A 33 433 48 HOH HOH . H 4 HOH A 34 434 137 HOH HOH . H 4 HOH A 35 435 173 HOH HOH . H 4 HOH A 36 436 116 HOH HOH . H 4 HOH A 37 437 25 HOH HOH . H 4 HOH A 38 438 108 HOH HOH . H 4 HOH A 39 439 280 HOH HOH . H 4 HOH A 40 440 214 HOH HOH . H 4 HOH A 41 441 139 HOH HOH . H 4 HOH A 42 442 274 HOH HOH . H 4 HOH A 43 443 35 HOH HOH . H 4 HOH A 44 444 40 HOH HOH . H 4 HOH A 45 445 127 HOH HOH . H 4 HOH A 46 446 79 HOH HOH . H 4 HOH A 47 447 219 HOH HOH . H 4 HOH A 48 448 222 HOH HOH . H 4 HOH A 49 449 195 HOH HOH . H 4 HOH A 50 450 260 HOH HOH . H 4 HOH A 51 451 99 HOH HOH . H 4 HOH A 52 452 136 HOH HOH . H 4 HOH A 53 453 124 HOH HOH . H 4 HOH A 54 454 193 HOH HOH . H 4 HOH A 55 455 57 HOH HOH . H 4 HOH A 56 456 162 HOH HOH . H 4 HOH A 57 457 76 HOH HOH . H 4 HOH A 58 458 179 HOH HOH . H 4 HOH A 59 459 82 HOH HOH . H 4 HOH A 60 460 106 HOH HOH . H 4 HOH A 61 461 69 HOH HOH . H 4 HOH A 62 462 170 HOH HOH . H 4 HOH A 63 463 263 HOH HOH . H 4 HOH A 64 464 83 HOH HOH . H 4 HOH A 65 465 37 HOH HOH . H 4 HOH A 66 466 158 HOH HOH . H 4 HOH A 67 467 281 HOH HOH . H 4 HOH A 68 468 171 HOH HOH . H 4 HOH A 69 469 72 HOH HOH . H 4 HOH A 70 470 77 HOH HOH . H 4 HOH A 71 471 165 HOH HOH . H 4 HOH A 72 472 216 HOH HOH . H 4 HOH A 73 473 107 HOH HOH . H 4 HOH A 74 474 192 HOH HOH . H 4 HOH A 75 475 80 HOH HOH . H 4 HOH A 76 476 209 HOH HOH . H 4 HOH A 77 477 16 HOH HOH . H 4 HOH A 78 478 24 HOH HOH . H 4 HOH A 79 479 277 HOH HOH . H 4 HOH A 80 480 211 HOH HOH . H 4 HOH A 81 481 62 HOH HOH . H 4 HOH A 82 482 273 HOH HOH . H 4 HOH A 83 483 205 HOH HOH . H 4 HOH A 84 484 38 HOH HOH . H 4 HOH A 85 485 229 HOH HOH . H 4 HOH A 86 486 118 HOH HOH . H 4 HOH A 87 487 166 HOH HOH . H 4 HOH A 88 488 242 HOH HOH . H 4 HOH A 89 489 92 HOH HOH . H 4 HOH A 90 490 196 HOH HOH . H 4 HOH A 91 491 236 HOH HOH . H 4 HOH A 92 492 184 HOH HOH . H 4 HOH A 93 493 198 HOH HOH . H 4 HOH A 94 494 134 HOH HOH . H 4 HOH A 95 495 42 HOH HOH . H 4 HOH A 96 496 71 HOH HOH . H 4 HOH A 97 497 147 HOH HOH . H 4 HOH A 98 498 15 HOH HOH . H 4 HOH A 99 499 151 HOH HOH . H 4 HOH A 100 500 101 HOH HOH . H 4 HOH A 101 501 73 HOH HOH . H 4 HOH A 102 502 109 HOH HOH . H 4 HOH A 103 503 41 HOH HOH . H 4 HOH A 104 504 58 HOH HOH . H 4 HOH A 105 505 199 HOH HOH . H 4 HOH A 106 506 97 HOH HOH . H 4 HOH A 107 507 135 HOH HOH . H 4 HOH A 108 508 154 HOH HOH . H 4 HOH A 109 509 105 HOH HOH . H 4 HOH A 110 510 233 HOH HOH . H 4 HOH A 111 511 85 HOH HOH . H 4 HOH A 112 512 218 HOH HOH . H 4 HOH A 113 513 278 HOH HOH . H 4 HOH A 114 514 119 HOH HOH . H 4 HOH A 115 515 182 HOH HOH . H 4 HOH A 116 516 145 HOH HOH . H 4 HOH A 117 517 34 HOH HOH . H 4 HOH A 118 518 65 HOH HOH . H 4 HOH A 119 519 159 HOH HOH . H 4 HOH A 120 520 249 HOH HOH . H 4 HOH A 121 521 160 HOH HOH . H 4 HOH A 122 522 143 HOH HOH . H 4 HOH A 123 523 7 HOH HOH . H 4 HOH A 124 524 3 HOH HOH . H 4 HOH A 125 525 259 HOH HOH . H 4 HOH A 126 526 44 HOH HOH . H 4 HOH A 127 527 88 HOH HOH . H 4 HOH A 128 528 279 HOH HOH . H 4 HOH A 129 529 266 HOH HOH . H 4 HOH A 130 530 13 HOH HOH . H 4 HOH A 131 531 227 HOH HOH . H 4 HOH A 132 532 126 HOH HOH . H 4 HOH A 133 533 78 HOH HOH . H 4 HOH A 134 534 223 HOH HOH . H 4 HOH A 135 535 243 HOH HOH . H 4 HOH A 136 536 125 HOH HOH . H 4 HOH A 137 537 200 HOH HOH . H 4 HOH A 138 538 18 HOH HOH . H 4 HOH A 139 539 81 HOH HOH . H 4 HOH A 140 540 176 HOH HOH . H 4 HOH A 141 541 237 HOH HOH . H 4 HOH A 142 542 67 HOH HOH . H 4 HOH A 143 543 138 HOH HOH . H 4 HOH A 144 544 45 HOH HOH . H 4 HOH A 145 545 23 HOH HOH . H 4 HOH A 146 546 68 HOH HOH . H 4 HOH A 147 547 36 HOH HOH . H 4 HOH A 148 548 268 HOH HOH . H 4 HOH A 149 549 207 HOH HOH . H 4 HOH A 150 550 100 HOH HOH . H 4 HOH A 151 551 246 HOH HOH . H 4 HOH A 152 552 202 HOH HOH . H 4 HOH A 153 553 191 HOH HOH . H 4 HOH A 154 554 181 HOH HOH . H 4 HOH A 155 555 180 HOH HOH . H 4 HOH A 156 556 153 HOH HOH . H 4 HOH A 157 557 275 HOH HOH . H 4 HOH A 158 558 183 HOH HOH . H 4 HOH A 159 559 261 HOH HOH . H 4 HOH A 160 560 123 HOH HOH . H 4 HOH A 161 561 169 HOH HOH . H 4 HOH A 162 562 269 HOH HOH . H 4 HOH A 163 563 113 HOH HOH . H 4 HOH A 164 564 232 HOH HOH . H 4 HOH A 165 565 47 HOH HOH . H 4 HOH A 166 566 133 HOH HOH . H 4 HOH A 167 567 156 HOH HOH . H 4 HOH A 168 568 253 HOH HOH . H 4 HOH A 169 569 272 HOH HOH . H 4 HOH A 170 570 194 HOH HOH . H 4 HOH A 171 571 256 HOH HOH . H 4 HOH A 172 572 270 HOH HOH . H 4 HOH A 173 573 1 HOH HOH . H 4 HOH A 174 574 155 HOH HOH . H 4 HOH A 175 575 220 HOH HOH . H 4 HOH A 176 576 204 HOH HOH . H 4 HOH A 177 577 163 HOH HOH . H 4 HOH A 178 578 19 HOH HOH . H 4 HOH A 179 579 241 HOH HOH . H 4 HOH A 180 580 29 HOH HOH . H 4 HOH A 181 581 110 HOH HOH . H 4 HOH A 182 582 64 HOH HOH . H 4 HOH A 183 583 32 HOH HOH . H 4 HOH A 184 584 146 HOH HOH . H 4 HOH A 185 585 203 HOH HOH . H 4 HOH A 186 586 244 HOH HOH . H 4 HOH A 187 587 70 HOH HOH . H 4 HOH A 188 588 157 HOH HOH . H 4 HOH A 189 589 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 -8.835 4.663 9.283 1 26.75 ? C1 PEG 303 A 1 HETATM 2 O O1 PEG . . . D 3 -9.176 5.456 10.427 1 26.4 ? O1 PEG 303 A 1 HETATM 3 C C2 PEG . . . D 3 -7.659 3.786 9.591 1 29.31 ? C2 PEG 303 A 1 HETATM 4 O O2 PEG . . . D 3 -7.21 3.09 8.437 1 32.46 ? O2 PEG 303 A 1 HETATM 5 C C3 PEG . . . D 3 -6.028 2.334 8.68 1 35.64 ? C3 PEG 303 A 1 HETATM 6 C C4 PEG . . . D 3 -6.386 0.922 9.051 1 38.61 ? C4 PEG 303 A 1 HETATM 7 O O4 PEG . . . D 3 -5.562 0.417 10.098 1 41.26 ? O4 PEG 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 7 #