data_5CG2
#
_model_server_result.job_id            kM09LT44t7zmfA48snOrUQ 
_model_server_result.datetime_utc      '2024-12-03 16:26:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5CG2 
#
_exptl.entry_id    5CG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              205.045 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1-hydroxy-2,3,1-benzodiazaborinine-2(1H)-carbothioamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CG2 
_cell.length_a            79.913 
_cell.length_b            79.913 
_cell.length_c            323.789 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 39.9565 -69.206688 53.964833 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O2D NAD . A NAD 500 1_555 D B1X CJ3 . A CJ3 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? 
covale ? covale2 E O2D NAD . B NAD 500 1_555 F B1X CJ3 . B CJ3 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
#
_chem_comp.formula           'C8 H8 B N3 O S' 
_chem_comp.formula_weight    205.045 
_chem_comp.id                CJ3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-hydroxy-2,3,1-benzodiazaborinine-2(1H)-carbothioamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2X N1X CJ3 doub 70 n n 
C2X C1X CJ3 sing 71 n n 
N1X N2X CJ3 sing 72 n n 
C8X C1X CJ3 sing 73 n y 
C8X C7X CJ3 doub 74 n y 
N3X C3X CJ3 sing 75 n n 
C1X C4X CJ3 doub 76 n y 
N2X C3X CJ3 sing 77 n n 
N2X B1X CJ3 sing 78 n n 
C7X C6X CJ3 sing 79 n y 
C3X S1X CJ3 doub 80 n n 
C4X B1X CJ3 sing 81 n n 
C4X C5X CJ3 sing 82 n y 
B1X O1X CJ3 sing 83 n n 
C6X C5X CJ3 doub 84 n y 
C5X H1 CJ3 sing 85 n n 
C6X H2 CJ3 sing 86 n n 
C7X H3 CJ3 sing 87 n n 
C8X H4 CJ3 sing 88 n n 
C2X H5 CJ3 sing 89 n n 
N3X H6 CJ3 sing 90 n n 
N3X H7 CJ3 sing 91 n n 
O1X H8 CJ3 sing 92 n n 
#
_atom_sites.entry_id                     5CG2 
_atom_sites.fract_transf_matrix[1][1]    0.012514 
_atom_sites.fract_transf_matrix[1][2]    0.007225 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003088 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 500 500 NAD NAD . 
D 3 CJ3 A 1 501 501 CJ3 CJ3 . 
E 2 NAD B 1 500 500 NAD NAD . 
F 3 CJ3 B 1 501 501 CJ3 CJ3 . 
G 4 HOH A 1 601 246 HOH HOH . 
G 4 HOH A 2 602 247 HOH HOH . 
G 4 HOH A 3 603 236 HOH HOH . 
G 4 HOH A 4 604 101 HOH HOH . 
G 4 HOH A 5 605 239 HOH HOH . 
G 4 HOH A 6 606 210 HOH HOH . 
G 4 HOH A 7 607 195 HOH HOH . 
G 4 HOH A 8 608 1 HOH HOH . 
G 4 HOH A 9 609 65 HOH HOH . 
G 4 HOH A 10 610 25 HOH HOH . 
G 4 HOH A 11 611 104 HOH HOH . 
G 4 HOH A 12 612 211 HOH HOH . 
G 4 HOH A 13 613 26 HOH HOH . 
G 4 HOH A 14 614 58 HOH HOH . 
G 4 HOH A 15 615 102 HOH HOH . 
G 4 HOH A 16 616 61 HOH HOH . 
G 4 HOH A 17 617 245 HOH HOH . 
G 4 HOH A 18 618 64 HOH HOH . 
G 4 HOH A 19 619 237 HOH HOH . 
G 4 HOH A 20 620 60 HOH HOH . 
G 4 HOH A 21 621 41 HOH HOH . 
G 4 HOH A 22 622 39 HOH HOH . 
G 4 HOH A 23 623 176 HOH HOH . 
G 4 HOH A 24 624 48 HOH HOH . 
G 4 HOH A 25 625 37 HOH HOH . 
G 4 HOH A 26 626 31 HOH HOH . 
G 4 HOH A 27 627 167 HOH HOH . 
G 4 HOH A 28 628 30 HOH HOH . 
G 4 HOH A 29 629 206 HOH HOH . 
G 4 HOH A 30 630 212 HOH HOH . 
G 4 HOH A 31 631 254 HOH HOH . 
G 4 HOH A 32 632 203 HOH HOH . 
G 4 HOH A 33 633 142 HOH HOH . 
G 4 HOH A 34 634 198 HOH HOH . 
G 4 HOH A 35 635 182 HOH HOH . 
G 4 HOH A 36 636 16 HOH HOH . 
G 4 HOH A 37 637 180 HOH HOH . 
G 4 HOH A 38 638 80 HOH HOH . 
G 4 HOH A 39 639 205 HOH HOH . 
G 4 HOH A 40 640 10 HOH HOH . 
G 4 HOH A 41 641 35 HOH HOH . 
G 4 HOH A 42 642 70 HOH HOH . 
G 4 HOH A 43 643 201 HOH HOH . 
G 4 HOH A 44 644 169 HOH HOH . 
G 4 HOH A 45 645 55 HOH HOH . 
G 4 HOH A 46 646 11 HOH HOH . 
G 4 HOH A 47 647 238 HOH HOH . 
G 4 HOH A 48 648 241 HOH HOH . 
G 4 HOH A 49 649 215 HOH HOH . 
G 4 HOH A 50 650 81 HOH HOH . 
G 4 HOH A 51 651 166 HOH HOH . 
G 4 HOH A 52 652 191 HOH HOH . 
G 4 HOH A 53 653 76 HOH HOH . 
G 4 HOH A 54 654 174 HOH HOH . 
G 4 HOH A 55 655 77 HOH HOH . 
G 4 HOH A 56 656 200 HOH HOH . 
G 4 HOH A 57 657 14 HOH HOH . 
G 4 HOH A 58 658 36 HOH HOH . 
G 4 HOH A 59 659 171 HOH HOH . 
G 4 HOH A 60 660 172 HOH HOH . 
G 4 HOH A 61 661 192 HOH HOH . 
G 4 HOH A 62 662 62 HOH HOH . 
G 4 HOH A 63 663 204 HOH HOH . 
G 4 HOH A 64 664 32 HOH HOH . 
G 4 HOH A 65 665 3 HOH HOH . 
G 4 HOH A 66 666 188 HOH HOH . 
G 4 HOH A 67 667 59 HOH HOH . 
G 4 HOH A 68 668 209 HOH HOH . 
G 4 HOH A 69 669 160 HOH HOH . 
G 4 HOH A 70 670 34 HOH HOH . 
G 4 HOH A 71 671 168 HOH HOH . 
G 4 HOH A 72 672 100 HOH HOH . 
G 4 HOH A 73 673 51 HOH HOH . 
G 4 HOH A 74 674 175 HOH HOH . 
G 4 HOH A 75 675 56 HOH HOH . 
G 4 HOH A 76 676 28 HOH HOH . 
G 4 HOH A 77 677 95 HOH HOH . 
G 4 HOH A 78 678 83 HOH HOH . 
G 4 HOH A 79 679 208 HOH HOH . 
G 4 HOH A 80 680 21 HOH HOH . 
G 4 HOH A 81 681 42 HOH HOH . 
G 4 HOH A 82 682 84 HOH HOH . 
G 4 HOH A 83 683 75 HOH HOH . 
G 4 HOH A 84 684 50 HOH HOH . 
G 4 HOH A 85 685 13 HOH HOH . 
G 4 HOH A 86 686 38 HOH HOH . 
G 4 HOH A 87 687 240 HOH HOH . 
G 4 HOH A 88 688 22 HOH HOH . 
G 4 HOH A 89 689 9 HOH HOH . 
G 4 HOH A 90 690 214 HOH HOH . 
G 4 HOH A 91 691 49 HOH HOH . 
G 4 HOH A 92 692 178 HOH HOH . 
G 4 HOH A 93 693 216 HOH HOH . 
G 4 HOH A 94 694 170 HOH HOH . 
G 4 HOH A 95 695 199 HOH HOH . 
G 4 HOH A 96 696 17 HOH HOH . 
G 4 HOH A 97 697 40 HOH HOH . 
G 4 HOH A 98 698 194 HOH HOH . 
G 4 HOH A 99 699 147 HOH HOH . 
G 4 HOH A 100 700 29 HOH HOH . 
G 4 HOH A 101 701 24 HOH HOH . 
G 4 HOH A 102 702 12 HOH HOH . 
G 4 HOH A 103 703 197 HOH HOH . 
G 4 HOH A 104 704 185 HOH HOH . 
G 4 HOH A 105 705 2 HOH HOH . 
G 4 HOH A 106 706 229 HOH HOH . 
G 4 HOH A 107 707 190 HOH HOH . 
G 4 HOH A 108 708 165 HOH HOH . 
G 4 HOH A 109 709 213 HOH HOH . 
G 4 HOH A 110 710 177 HOH HOH . 
G 4 HOH A 111 711 202 HOH HOH . 
G 4 HOH A 112 712 217 HOH HOH . 
G 4 HOH A 113 713 193 HOH HOH . 
G 4 HOH A 114 714 4 HOH HOH . 
G 4 HOH A 115 715 181 HOH HOH . 
G 4 HOH A 116 716 189 HOH HOH . 
G 4 HOH A 117 717 23 HOH HOH . 
G 4 HOH A 118 718 173 HOH HOH . 
G 4 HOH A 119 719 27 HOH HOH . 
H 4 HOH B 1 601 46 HOH HOH . 
H 4 HOH B 2 602 249 HOH HOH . 
H 4 HOH B 3 603 242 HOH HOH . 
H 4 HOH B 4 604 117 HOH HOH . 
H 4 HOH B 5 605 72 HOH HOH . 
H 4 HOH B 6 606 121 HOH HOH . 
H 4 HOH B 7 607 116 HOH HOH . 
H 4 HOH B 8 608 131 HOH HOH . 
H 4 HOH B 9 609 184 HOH HOH . 
H 4 HOH B 10 610 243 HOH HOH . 
H 4 HOH B 11 611 98 HOH HOH . 
H 4 HOH B 12 612 126 HOH HOH . 
H 4 HOH B 13 613 227 HOH HOH . 
H 4 HOH B 14 614 124 HOH HOH . 
H 4 HOH B 15 615 88 HOH HOH . 
H 4 HOH B 16 616 6 HOH HOH . 
H 4 HOH B 17 617 144 HOH HOH . 
H 4 HOH B 18 618 244 HOH HOH . 
H 4 HOH B 19 619 119 HOH HOH . 
H 4 HOH B 20 620 136 HOH HOH . 
H 4 HOH B 21 621 128 HOH HOH . 
H 4 HOH B 22 622 45 HOH HOH . 
H 4 HOH B 23 623 251 HOH HOH . 
H 4 HOH B 24 624 129 HOH HOH . 
H 4 HOH B 25 625 92 HOH HOH . 
H 4 HOH B 26 626 250 HOH HOH . 
H 4 HOH B 27 627 248 HOH HOH . 
H 4 HOH B 28 628 143 HOH HOH . 
H 4 HOH B 29 629 7 HOH HOH . 
H 4 HOH B 30 630 114 HOH HOH . 
H 4 HOH B 31 631 219 HOH HOH . 
H 4 HOH B 32 632 146 HOH HOH . 
H 4 HOH B 33 633 253 HOH HOH . 
H 4 HOH B 34 634 122 HOH HOH . 
H 4 HOH B 35 635 231 HOH HOH . 
H 4 HOH B 36 636 252 HOH HOH . 
H 4 HOH B 37 637 5 HOH HOH . 
H 4 HOH B 38 638 223 HOH HOH . 
H 4 HOH B 39 639 94 HOH HOH . 
H 4 HOH B 40 640 132 HOH HOH . 
H 4 HOH B 41 641 149 HOH HOH . 
H 4 HOH B 42 642 120 HOH HOH . 
H 4 HOH B 43 643 157 HOH HOH . 
H 4 HOH B 44 644 71 HOH HOH . 
H 4 HOH B 45 645 112 HOH HOH . 
H 4 HOH B 46 646 43 HOH HOH . 
H 4 HOH B 47 647 89 HOH HOH . 
H 4 HOH B 48 648 137 HOH HOH . 
H 4 HOH B 49 649 47 HOH HOH . 
H 4 HOH B 50 650 162 HOH HOH . 
H 4 HOH B 51 651 130 HOH HOH . 
H 4 HOH B 52 652 108 HOH HOH . 
H 4 HOH B 53 653 222 HOH HOH . 
H 4 HOH B 54 654 140 HOH HOH . 
H 4 HOH B 55 655 154 HOH HOH . 
H 4 HOH B 56 656 20 HOH HOH . 
H 4 HOH B 57 657 90 HOH HOH . 
H 4 HOH B 58 658 134 HOH HOH . 
H 4 HOH B 59 659 74 HOH HOH . 
H 4 HOH B 60 660 225 HOH HOH . 
H 4 HOH B 61 661 44 HOH HOH . 
H 4 HOH B 62 662 164 HOH HOH . 
H 4 HOH B 63 663 115 HOH HOH . 
H 4 HOH B 64 664 158 HOH HOH . 
H 4 HOH B 65 665 97 HOH HOH . 
H 4 HOH B 66 666 235 HOH HOH . 
H 4 HOH B 67 667 232 HOH HOH . 
H 4 HOH B 68 668 135 HOH HOH . 
H 4 HOH B 69 669 113 HOH HOH . 
H 4 HOH B 70 670 230 HOH HOH . 
H 4 HOH B 71 671 145 HOH HOH . 
H 4 HOH B 72 672 87 HOH HOH . 
H 4 HOH B 73 673 150 HOH HOH . 
H 4 HOH B 74 674 234 HOH HOH . 
H 4 HOH B 75 675 151 HOH HOH . 
H 4 HOH B 76 676 73 HOH HOH . 
H 4 HOH B 77 677 15 HOH HOH . 
H 4 HOH B 78 678 183 HOH HOH . 
H 4 HOH B 79 679 133 HOH HOH . 
H 4 HOH B 80 680 96 HOH HOH . 
H 4 HOH B 81 681 224 HOH HOH . 
H 4 HOH B 82 682 118 HOH HOH . 
H 4 HOH B 83 683 18 HOH HOH . 
H 4 HOH B 84 684 125 HOH HOH . 
H 4 HOH B 85 685 139 HOH HOH . 
H 4 HOH B 86 686 141 HOH HOH . 
H 4 HOH B 87 687 8 HOH HOH . 
H 4 HOH B 88 688 109 HOH HOH . 
H 4 HOH B 89 689 163 HOH HOH . 
H 4 HOH B 90 690 153 HOH HOH . 
H 4 HOH B 91 691 255 HOH HOH . 
H 4 HOH B 92 692 19 HOH HOH . 
H 4 HOH B 93 693 179 HOH HOH . 
H 4 HOH B 94 694 226 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B1X CJ3 . . . D 3 -8.907 -42.562 9.443 1 22.54 ? B1X CJ3 501 A 1 
HETATM 2 C C4X CJ3 . . . D 3 -8.322 -43.935 9.083 1 22.05 ? C4X CJ3 501 A 1 
HETATM 3 C C5X CJ3 . . . D 3 -7.267 -44.519 9.785 1 22.69 ? C5X CJ3 501 A 1 
HETATM 4 C C6X CJ3 . . . D 3 -6.681 -45.695 9.349 1 21.26 ? C6X CJ3 501 A 1 
HETATM 5 C C7X CJ3 . . . D 3 -7.167 -46.341 8.228 1 22.81 ? C7X CJ3 501 A 1 
HETATM 6 C C8X CJ3 . . . D 3 -8.246 -45.821 7.536 1 21.85 ? C8X CJ3 501 A 1 
HETATM 7 C C1X CJ3 . . . D 3 -8.818 -44.608 7.937 1 22.9 ? C1X CJ3 501 A 1 
HETATM 8 C C2X CJ3 . . . D 3 -9.827 -43.941 7.137 1 23.52 ? C2X CJ3 501 A 1 
HETATM 9 N N1X CJ3 . . . D 3 -10.31 -42.767 7.351 1 22.89 ? N1X CJ3 501 A 1 
HETATM 10 N N2X CJ3 . . . D 3 -9.91 -42.067 8.399 1 23.28 ? N2X CJ3 501 A 1 
HETATM 11 C C3X CJ3 . . . D 3 -10.683 -40.713 8.472 1 23.92 ? C3X CJ3 501 A 1 
HETATM 12 N N3X CJ3 . . . D 3 -11.715 -40.56 7.647 1 25.12 ? N3X CJ3 501 A 1 
HETATM 13 S S1X CJ3 . . . D 3 -10.219 -39.575 9.621 1 25.95 ? S1X CJ3 501 A 1 
HETATM 14 O O1X CJ3 . . . D 3 -7.957 -41.554 9.819 1 21.04 ? O1X CJ3 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#