data_5CG6 # _model_server_result.job_id fttKDXgPUGQqTivBIT8nLw _model_server_result.datetime_utc '2025-03-06 21:54:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5CG6 # loop_ _exptl.entry_id _exptl.method 5CG6 'X-RAY DIFFRACTION' 5CG6 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CG6 _cell.length_a 111.627 _cell.length_b 111.627 _cell.length_c 72.553 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -36.2765 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 97 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A OD2 ASP 97 A ASP 103 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 A OD2 ASP 101 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OD2 ASP 101 A ASP 107 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A OD2 ASP 237 A ASP 243 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O17 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 B MG MG . A MG 401 1_555 G O DOD . A DOD 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 B MG MG . A MG 401 1_555 G O DOD . A DOD 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc9 B MG MG . A MG 401 1_555 G O DOD . A DOD 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc10 C MG MG . A MG 402 1_555 E O12 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O17 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 C MG MG . A MG 402 1_555 G O DOD . A DOD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc13 C MG MG . A MG 402 1_555 G O DOD . A DOD 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc14 D MG MG . A MG 403 1_555 E O10 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc15 D MG MG . A MG 403 1_555 E O15 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 D MG MG . A MG 403 1_555 G O DOD . A DOD 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc17 D MG MG . A MG 403 1_555 G O DOD . A DOD 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc18 D MG MG . A MG 403 1_555 G O DOD . A DOD 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CG6 _atom_sites.fract_transf_matrix[1][1] 0.008958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 401 MG MG . C 2 MG A 1 402 402 MG MG . D 2 MG A 1 403 403 MG MG . E 3 RIS A 1 404 400 RIS DRG . F 4 IPE A 1 406 404 IPE IPP . G 5 DOD A 1 501 534 DOD DOD . G 5 DOD A 2 502 526 DOD DOD . G 5 DOD A 3 503 544 DOD DOD . G 5 DOD A 4 504 545 DOD DOD . G 5 DOD A 5 505 501 DOD DOD . G 5 DOD A 6 506 529 DOD DOD . G 5 DOD A 7 507 505 DOD DOD . G 5 DOD A 8 508 527 DOD DOD . G 5 DOD A 9 509 524 DOD DOD . G 5 DOD A 10 510 518 DOD DOD . G 5 DOD A 11 511 547 DOD DOD . G 5 DOD A 12 512 559 DOD DOD . G 5 DOD A 13 513 536 DOD DOD . G 5 DOD A 14 514 506 DOD DOD . G 5 DOD A 15 515 558 DOD DOD . G 5 DOD A 16 516 521 DOD DOD . G 5 DOD A 17 517 508 DOD DOD . G 5 DOD A 18 518 592 DOD DOD . G 5 DOD A 19 519 537 DOD DOD . G 5 DOD A 20 520 550 DOD DOD . G 5 DOD A 21 521 507 DOD DOD . G 5 DOD A 22 522 530 DOD DOD . G 5 DOD A 23 523 525 DOD DOD . G 5 DOD A 24 524 551 DOD DOD . G 5 DOD A 25 525 554 DOD DOD . G 5 DOD A 26 526 502 DOD DOD . G 5 DOD A 27 527 515 DOD DOD . G 5 DOD A 28 528 516 DOD DOD . G 5 DOD A 29 529 607 DOD DOD . G 5 DOD A 30 530 519 DOD DOD . G 5 DOD A 31 531 546 DOD DOD . G 5 DOD A 32 532 532 DOD DOD . G 5 DOD A 33 533 552 DOD DOD . G 5 DOD A 34 534 528 DOD DOD . G 5 DOD A 35 535 523 DOD DOD . G 5 DOD A 36 536 522 DOD DOD . G 5 DOD A 37 537 533 DOD DOD . G 5 DOD A 38 538 549 DOD DOD . G 5 DOD A 39 539 503 DOD DOD . G 5 DOD A 40 540 531 DOD DOD . G 5 DOD A 41 541 504 DOD DOD . G 5 DOD A 42 542 514 DOD DOD . G 5 DOD A 43 543 553 DOD DOD . G 5 DOD A 44 544 520 DOD DOD . G 5 DOD A 45 545 538 DOD DOD . G 5 DOD A 46 546 517 DOD DOD . G 5 DOD A 47 547 535 DOD DOD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.266 _atom_site.Cartn_y -37.631 _atom_site.Cartn_z -7.39 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #