data_5CGD # _model_server_result.job_id wa3lgMArgIeLc62phg12Tg _model_server_result.datetime_utc '2025-08-16 06:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4003}' # _entry.id 5CGD # _exptl.entry_id 5CGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.97 _cell.angle_gamma 90 _cell.entry_id 5CGD _cell.length_a 143.574 _cell.length_b 43.727 _cell.length_c 81.862 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 79 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 644 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 328 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 733 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 269 n n C1 O2 OLA sing 270 n n C1 C2 OLA sing 271 n n O2 HO2 OLA sing 272 n n C2 C3 OLA sing 273 n n C2 H21 OLA sing 274 n n C2 H22 OLA sing 275 n n C3 C4 OLA sing 276 n n C3 H31 OLA sing 277 n n C3 H32 OLA sing 278 n n C4 C5 OLA sing 279 n n C4 H41 OLA sing 280 n n C4 H42 OLA sing 281 n n C5 C6 OLA sing 282 n n C5 H51 OLA sing 283 n n C5 H52 OLA sing 284 n n C6 C7 OLA sing 285 n n C6 H61 OLA sing 286 n n C6 H62 OLA sing 287 n n C7 C8 OLA sing 288 n n C7 H71 OLA sing 289 n n C7 H72 OLA sing 290 n n C8 C9 OLA sing 291 n n C8 H81 OLA sing 292 n n C8 H82 OLA sing 293 n n C9 C10 OLA doub 294 z n C9 H9 OLA sing 295 n n C10 C11 OLA sing 296 n n C10 H10 OLA sing 297 n n C11 C12 OLA sing 298 n n C11 H111 OLA sing 299 n n C11 H112 OLA sing 300 n n C12 C13 OLA sing 301 n n C12 H121 OLA sing 302 n n C12 H122 OLA sing 303 n n C13 C14 OLA sing 304 n n C13 H131 OLA sing 305 n n C13 H132 OLA sing 306 n n C14 C15 OLA sing 307 n n C14 H141 OLA sing 308 n n C14 H142 OLA sing 309 n n C15 C16 OLA sing 310 n n C15 H151 OLA sing 311 n n C15 H152 OLA sing 312 n n C16 C17 OLA sing 313 n n C16 H161 OLA sing 314 n n C16 H162 OLA sing 315 n n C17 C18 OLA sing 316 n n C17 H171 OLA sing 317 n n C17 H172 OLA sing 318 n n C18 H181 OLA sing 319 n n C18 H182 OLA sing 320 n n C18 H183 OLA sing 321 n n # _atom_sites.entry_id 5CGD _atom_sites.fract_transf_matrix[1][1] 0.006965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 4001 4001 OLA OLA . C 2 OLA A 1 4002 4002 OLA OLA . D 2 OLA A 1 4003 4003 OLA OLA . E 2 OLA A 1 4004 4004 OLA OLA . F 3 51E A 1 4005 911 51E 142 . G 4 HOH A 1 4101 15 HOH HOH . G 4 HOH A 2 4102 4141 HOH HOH . G 4 HOH A 3 4103 4120 HOH HOH . G 4 HOH A 4 4104 4132 HOH HOH . G 4 HOH A 5 4105 4121 HOH HOH . G 4 HOH A 6 4106 4135 HOH HOH . G 4 HOH A 7 4107 4140 HOH HOH . G 4 HOH A 8 4108 4109 HOH HOH . G 4 HOH A 9 4109 14 HOH HOH . G 4 HOH A 10 4110 2 HOH HOH . G 4 HOH A 11 4111 4 HOH HOH . G 4 HOH A 12 4112 4131 HOH HOH . G 4 HOH A 13 4113 4107 HOH HOH . G 4 HOH A 14 4114 13 HOH HOH . G 4 HOH A 15 4115 1 HOH HOH . G 4 HOH A 16 4116 6 HOH HOH . G 4 HOH A 17 4117 4125 HOH HOH . G 4 HOH A 18 4118 4124 HOH HOH . G 4 HOH A 19 4119 21 HOH HOH . G 4 HOH A 20 4120 4138 HOH HOH . G 4 HOH A 21 4121 5 HOH HOH . G 4 HOH A 22 4122 4122 HOH HOH . G 4 HOH A 23 4123 7 HOH HOH . G 4 HOH A 24 4124 22 HOH HOH . G 4 HOH A 25 4125 4123 HOH HOH . G 4 HOH A 26 4126 4137 HOH HOH . G 4 HOH A 27 4127 30 HOH HOH . G 4 HOH A 28 4128 4112 HOH HOH . G 4 HOH A 29 4129 17 HOH HOH . G 4 HOH A 30 4130 16 HOH HOH . G 4 HOH A 31 4131 4106 HOH HOH . G 4 HOH A 32 4132 4134 HOH HOH . G 4 HOH A 33 4133 28 HOH HOH . G 4 HOH A 34 4134 19 HOH HOH . G 4 HOH A 35 4135 12 HOH HOH . G 4 HOH A 36 4136 4145 HOH HOH . G 4 HOH A 37 4137 4133 HOH HOH . G 4 HOH A 38 4138 29 HOH HOH . G 4 HOH A 39 4139 4104 HOH HOH . G 4 HOH A 40 4140 4103 HOH HOH . G 4 HOH A 41 4141 4108 HOH HOH . G 4 HOH A 42 4142 4128 HOH HOH . G 4 HOH A 43 4143 26 HOH HOH . G 4 HOH A 44 4144 9 HOH HOH . G 4 HOH A 45 4145 25 HOH HOH . G 4 HOH A 46 4146 4127 HOH HOH . G 4 HOH A 47 4147 4146 HOH HOH . G 4 HOH A 48 4148 4114 HOH HOH . G 4 HOH A 49 4149 4110 HOH HOH . G 4 HOH A 50 4150 4115 HOH HOH . G 4 HOH A 51 4151 4111 HOH HOH . G 4 HOH A 52 4152 4129 HOH HOH . G 4 HOH A 53 4153 18 HOH HOH . G 4 HOH A 54 4154 3 HOH HOH . G 4 HOH A 55 4155 4130 HOH HOH . G 4 HOH A 56 4156 4118 HOH HOH . G 4 HOH A 57 4157 4105 HOH HOH . G 4 HOH A 58 4158 24 HOH HOH . G 4 HOH A 59 4159 20 HOH HOH . G 4 HOH A 60 4160 23 HOH HOH . G 4 HOH A 61 4161 27 HOH HOH . G 4 HOH A 62 4162 11 HOH HOH . G 4 HOH A 63 4163 10 HOH HOH . G 4 HOH A 64 4164 4139 HOH HOH . G 4 HOH A 65 4165 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . D 2 -10.772 2.268 56.004 1 48.31 ? C1 OLA 4003 A 1 HETATM 2 O O1 OLA . . . D 2 -9.566 2.057 55.888 1 46.18 ? O1 OLA 4003 A 1 HETATM 3 O O2 OLA . . . D 2 -11.263 2.602 57.083 1 48.53 ? O2 OLA 4003 A 1 HETATM 4 C C2 OLA . . . D 2 -11.664 2.12 54.808 1 41.37 ? C2 OLA 4003 A 1 HETATM 5 C C3 OLA . . . D 2 -10.969 1.387 53.673 1 37.76 ? C3 OLA 4003 A 1 HETATM 6 C C4 OLA . . . D 2 -11.515 1.746 52.296 1 40.4 ? C4 OLA 4003 A 1 HETATM 7 C C5 OLA . . . D 2 -12.54 0.723 51.845 1 49.3 ? C5 OLA 4003 A 1 HETATM 8 C C6 OLA . . . D 2 -13.686 1.345 51.07 1 48.24 ? C6 OLA 4003 A 1 HETATM 9 C C7 OLA . . . D 2 -13.924 0.551 49.801 1 48.69 ? C7 OLA 4003 A 1 HETATM 10 C C8 OLA . . . D 2 -15.323 0.72 49.249 1 54.31 ? C8 OLA 4003 A 1 HETATM 11 C C9 OLA . . . D 2 -15.176 1.018 47.784 1 54.59 ? C9 OLA 4003 A 1 HETATM 12 C C10 OLA . . . D 2 -16.118 0.767 46.894 1 61 ? C10 OLA 4003 A 1 HETATM 13 C C11 OLA . . . D 2 -17.457 0.226 47.283 1 58.17 ? C11 OLA 4003 A 1 HETATM 14 C C12 OLA . . . D 2 -18.553 0.994 46.568 1 56.96 ? C12 OLA 4003 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #