data_5CGP # _model_server_result.job_id hvReHZts6Cb9El8LRGBt0Q _model_server_result.datetime_utc '2024-11-15 03:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 5CGP # _exptl.entry_id 5CGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.568 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[2-(4-methoxyphenyl)ethyl]-1-[2-(morpholin-4-yl)ethyl]-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.7 _cell.angle_gamma 90 _cell.entry_id 5CGP _cell.length_a 90.09 _cell.length_b 33.74 _cell.length_c 40.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 N4 O3' _chem_comp.formula_weight 460.568 _chem_comp.id 53W _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[2-(4-methoxyphenyl)ethyl]-1-[2-(morpholin-4-yl)ethyl]-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 53W sing 1 n n N C1 53W doub 2 n y N O 53W sing 3 n y C1 C2 53W sing 4 n y C21 C22 53W doub 5 n y C21 C20 53W sing 6 n y O C3 53W sing 7 n y C22 C23 53W sing 8 n y C10 C9 53W doub 9 n y C10 C5 53W sing 10 n y C19 C20 53W sing 11 n n C19 C18 53W sing 12 n n C2 C3 53W doub 13 n y C2 C5 53W sing 14 n n N1 C9 53W sing 15 n y N1 C11 53W doub 16 n y C20 C25 53W doub 17 n y C3 C4 53W sing 18 n n C9 C8 53W sing 19 n y C5 C6 53W doub 20 n y C23 O2 53W sing 21 n n C23 C24 53W doub 22 n y C18 C11 53W sing 23 n n O2 C26 53W sing 24 n n C11 N2 53W sing 25 n y C25 C24 53W sing 26 n y C8 N2 53W sing 27 n y C8 C7 53W doub 28 n y C6 C7 53W sing 29 n y N2 C12 53W sing 30 n n C12 C13 53W sing 31 n n C13 N3 53W sing 32 n n C16 O1 53W sing 33 n n C16 C17 53W sing 34 n n C15 O1 53W sing 35 n n C15 C14 53W sing 36 n n N3 C17 53W sing 37 n n N3 C14 53W sing 38 n n C4 H4 53W sing 39 n n C4 H5 53W sing 40 n n C4 H3 53W sing 41 n n C12 H9 53W sing 42 n n C12 H10 53W sing 43 n n C13 H11 53W sing 44 n n C13 H12 53W sing 45 n n C10 H8 53W sing 46 n n C14 H14 53W sing 47 n n C14 H13 53W sing 48 n n C16 H17 53W sing 49 n n C16 H18 53W sing 50 n n C21 H25 53W sing 51 n n C22 H26 53W sing 52 n n C24 H27 53W sing 53 n n C25 H28 53W sing 54 n n C26 H30 53W sing 55 n n C26 H29 53W sing 56 n n C26 H31 53W sing 57 n n C19 H23 53W sing 58 n n C19 H24 53W sing 59 n n C18 H22 53W sing 60 n n C18 H21 53W sing 61 n n C17 H20 53W sing 62 n n C17 H19 53W sing 63 n n C15 H15 53W sing 64 n n C15 H16 53W sing 65 n n C7 H7 53W sing 66 n n C6 H6 53W sing 67 n n C H 53W sing 68 n n C H1 53W sing 69 n n C H2 53W sing 70 n n # _atom_sites.entry_id 5CGP _atom_sites.fract_transf_matrix[1][1] 0.0111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000523 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 53W A 1 4000 4000 53W PFE . C 3 HOH A 1 4101 44 HOH HOH . C 3 HOH A 2 4102 9 HOH HOH . C 3 HOH A 3 4103 6 HOH HOH . C 3 HOH A 4 4104 53 HOH HOH . C 3 HOH A 5 4105 52 HOH HOH . C 3 HOH A 6 4106 3 HOH HOH . C 3 HOH A 7 4107 41 HOH HOH . C 3 HOH A 8 4108 1 HOH HOH . C 3 HOH A 9 4109 13 HOH HOH . C 3 HOH A 10 4110 8 HOH HOH . C 3 HOH A 11 4111 31 HOH HOH . C 3 HOH A 12 4112 30 HOH HOH . C 3 HOH A 13 4113 40 HOH HOH . C 3 HOH A 14 4114 32 HOH HOH . C 3 HOH A 15 4115 55 HOH HOH . C 3 HOH A 16 4116 10 HOH HOH . C 3 HOH A 17 4117 56 HOH HOH . C 3 HOH A 18 4118 12 HOH HOH . C 3 HOH A 19 4119 50 HOH HOH . C 3 HOH A 20 4120 45 HOH HOH . C 3 HOH A 21 4121 42 HOH HOH . C 3 HOH A 22 4122 59 HOH HOH . C 3 HOH A 23 4123 51 HOH HOH . C 3 HOH A 24 4124 23 HOH HOH . C 3 HOH A 25 4125 47 HOH HOH . C 3 HOH A 26 4126 22 HOH HOH . C 3 HOH A 27 4127 54 HOH HOH . C 3 HOH A 28 4128 7 HOH HOH . C 3 HOH A 29 4129 5 HOH HOH . C 3 HOH A 30 4130 15 HOH HOH . C 3 HOH A 31 4131 39 HOH HOH . C 3 HOH A 32 4132 38 HOH HOH . C 3 HOH A 33 4133 33 HOH HOH . C 3 HOH A 34 4134 17 HOH HOH . C 3 HOH A 35 4135 26 HOH HOH . C 3 HOH A 36 4136 48 HOH HOH . C 3 HOH A 37 4137 28 HOH HOH . C 3 HOH A 38 4138 16 HOH HOH . C 3 HOH A 39 4139 21 HOH HOH . C 3 HOH A 40 4140 4 HOH HOH . C 3 HOH A 41 4141 34 HOH HOH . C 3 HOH A 42 4142 18 HOH HOH . C 3 HOH A 43 4143 11 HOH HOH . C 3 HOH A 44 4144 37 HOH HOH . C 3 HOH A 45 4145 46 HOH HOH . C 3 HOH A 46 4146 35 HOH HOH . C 3 HOH A 47 4147 43 HOH HOH . C 3 HOH A 48 4148 49 HOH HOH . C 3 HOH A 49 4149 2 HOH HOH . C 3 HOH A 50 4150 25 HOH HOH . C 3 HOH A 51 4151 14 HOH HOH . C 3 HOH A 52 4152 24 HOH HOH . C 3 HOH A 53 4153 58 HOH HOH . C 3 HOH A 54 4154 57 HOH HOH . C 3 HOH A 55 4155 36 HOH HOH . C 3 HOH A 56 4156 27 HOH HOH . C 3 HOH A 57 4157 20 HOH HOH . C 3 HOH A 58 4158 19 HOH HOH . C 3 HOH A 59 4159 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 53W . . . B 2 -11.945 -3.889 -1.803 1 18.89 ? C1 53W 4000 A 1 HETATM 2 C C2 53W . . . B 2 -11.468 -4.919 -2.7 1 18.98 ? C2 53W 4000 A 1 HETATM 3 C C4 53W . . . B 2 -10.655 -4.648 -5.175 1 17.49 ? C4 53W 4000 A 1 HETATM 4 C C8 53W . . . B 2 -11.01 -9.005 -1.887 1 15.03 ? C8 53W 4000 A 1 HETATM 5 C C9 53W . . . B 2 -11.576 -8.596 -3.124 1 17.79 ? C9 53W 4000 A 1 HETATM 6 C C12 53W . . . B 2 -10.641 -11.243 -0.776 1 15.58 ? C12 53W 4000 A 1 HETATM 7 C C13 53W . . . B 2 -11.842 -11.289 0.198 1 20.03 ? C13 53W 4000 A 1 HETATM 8 C C10 53W . . . B 2 -11.739 -7.236 -3.404 1 17.54 ? C10 53W 4000 A 1 HETATM 9 C C11 53W . . . B 2 -11.567 -10.789 -3.15 1 16.66 ? C11 53W 4000 A 1 HETATM 10 C C14 53W . . . B 2 -12.735 -12.69 2.011 1 21.52 ? C14 53W 4000 A 1 HETATM 11 C C16 53W . . . B 2 -10.214 -12.733 3.306 1 21.98 ? C16 53W 4000 A 1 HETATM 12 C C21 53W . . . B 2 -14.863 -10.947 -2.995 1 13.93 ? C21 53W 4000 A 1 HETATM 13 C C22 53W . . . B 2 -15.725 -10.662 -1.95 1 13.22 ? C22 53W 4000 A 1 HETATM 14 C C23 53W . . . B 2 -15.881 -11.601 -0.921 1 12.33 ? C23 53W 4000 A 1 HETATM 15 C C24 53W . . . B 2 -15.216 -12.823 -0.953 1 14.71 ? C24 53W 4000 A 1 HETATM 16 C C25 53W . . . B 2 -14.347 -13.084 -2.008 1 15.4 ? C25 53W 4000 A 1 HETATM 17 C C26 53W . . . B 2 -16.837 -12.008 1.203 1 14.12 ? C26 53W 4000 A 1 HETATM 18 O O2 53W . . . B 2 -16.729 -11.19 0.067 1 14.49 ? O2 53W 4000 A 1 HETATM 19 C C20 53W . . . B 2 -14.154 -12.149 -3.017 1 15.34 ? C20 53W 4000 A 1 HETATM 20 C C19 53W . . . B 2 -13.168 -12.426 -4.103 1 17.16 ? C19 53W 4000 A 1 HETATM 21 C C18 53W . . . B 2 -11.75 -12.208 -3.565 1 18.9 ? C18 53W 4000 A 1 HETATM 22 N N2 53W . . . B 2 -10.965 -10.408 -1.928 1 14.44 ? N2 53W 4000 A 1 HETATM 23 N N3 53W . . . B 2 -11.509 -12.252 1.285 1 21.23 ? N3 53W 4000 A 1 HETATM 24 C C17 53W . . . B 2 -10.561 -11.653 2.266 1 21.54 ? C17 53W 4000 A 1 HETATM 25 O O1 53W . . . B 2 -11.379 -13.172 3.953 1 22.83 ? O1 53W 4000 A 1 HETATM 26 C C15 53W . . . B 2 -12.312 -13.727 3.066 1 21.66 ? C15 53W 4000 A 1 HETATM 27 C C7 53W . . . B 2 -10.598 -8.085 -0.919 1 13.47 ? C7 53W 4000 A 1 HETATM 28 C C6 53W . . . B 2 -10.764 -6.749 -1.215 1 14.19 ? C6 53W 4000 A 1 HETATM 29 N N1 53W . . . B 2 -11.911 -9.726 -3.907 1 18.29 ? N1 53W 4000 A 1 HETATM 30 C C5 53W . . . B 2 -11.336 -6.331 -2.438 1 17.54 ? C5 53W 4000 A 1 HETATM 31 C C3 53W . . . B 2 -11.158 -4.241 -3.858 1 18.15 ? C3 53W 4000 A 1 HETATM 32 O O 53W . . . B 2 -11.406 -2.902 -3.672 1 19.63 ? O 53W 4000 A 1 HETATM 33 N N 53W . . . B 2 -11.886 -2.7 -2.438 1 20.27 ? N 53W 4000 A 1 HETATM 34 C C 53W . . . B 2 -12.449 -4.056 -0.427 1 17.78 ? C 53W 4000 A 1 HETATM 35 H H4 53W . . . B 2 -10.051 -5.566 -5.1 0 17.49 ? H4 53W 4000 A 1 HETATM 36 H H5 53W . . . B 2 -11.487 -4.858 -5.867 0 17.49 ? H5 53W 4000 A 1 HETATM 37 H H3 53W . . . B 2 -10.033 -3.872 -5.646 0 17.49 ? H3 53W 4000 A 1 HETATM 38 H H9 53W . . . B 2 -10.358 -12.267 -1.115 0 15.57 ? H9 53W 4000 A 1 HETATM 39 H H10 53W . . . B 2 -9.726 -10.833 -0.288 0 15.57 ? H10 53W 4000 A 1 HETATM 40 H H11 53W . . . B 2 -12.753 -11.634 -0.349 0 20.01 ? H11 53W 4000 A 1 HETATM 41 H H12 53W . . . B 2 -12.096 -10.26 0.549 0 20.01 ? H12 53W 4000 A 1 HETATM 42 H H8 53W . . . B 2 -12.184 -6.918 -4.351 0 17.5 ? H8 53W 4000 A 1 HETATM 43 H H14 53W . . . B 2 -13.445 -13.159 1.291 0 21.55 ? H14 53W 4000 A 1 HETATM 44 H H13 53W . . . B 2 -13.307 -11.858 2.487 0 21.55 ? H13 53W 4000 A 1 HETATM 45 H H17 53W . . . B 2 -9.649 -13.575 2.847 0 21.98 ? H17 53W 4000 A 1 HETATM 46 H H18 53W . . . B 2 -9.583 -12.326 4.124 0 21.98 ? H18 53W 4000 A 1 HETATM 47 H H25 53W . . . B 2 -14.727 -10.213 -3.798 0 13.88 ? H25 53W 4000 A 1 HETATM 48 H H26 53W . . . B 2 -16.274 -9.717 -1.922 0 13.23 ? H26 53W 4000 A 1 HETATM 49 H H27 53W . . . B 2 -15.363 -13.591 -0.191 0 14.69 ? H27 53W 4000 A 1 HETATM 50 H H28 53W . . . B 2 -13.814 -14.04 -2.036 0 15.36 ? H28 53W 4000 A 1 HETATM 51 H H30 53W . . . B 2 -17.309 -12.982 0.993 0 14.11 ? H30 53W 4000 A 1 HETATM 52 H H29 53W . . . B 2 -15.875 -12.176 1.717 0 14.11 ? H29 53W 4000 A 1 HETATM 53 H H31 53W . . . B 2 -17.498 -11.434 1.872 0 14.11 ? H31 53W 4000 A 1 HETATM 54 H H23 53W . . . B 2 -13.349 -11.794 -4.999 0 17.14 ? H23 53W 4000 A 1 HETATM 55 H H24 53W . . . B 2 -13.275 -13.468 -4.477 0 17.14 ? H24 53W 4000 A 1 HETATM 56 H H22 53W . . . B 2 -11.545 -12.915 -2.733 0 18.9 ? H22 53W 4000 A 1 HETATM 57 H H21 53W . . . B 2 -10.995 -12.457 -4.344 0 18.9 ? H21 53W 4000 A 1 HETATM 58 H H20 53W . . . B 2 -9.633 -11.324 1.747 0 21.56 ? H20 53W 4000 A 1 HETATM 59 H H19 53W . . . B 2 -10.951 -10.739 2.775 0 21.56 ? H19 53W 4000 A 1 HETATM 60 H H15 53W . . . B 2 -13.164 -14.022 3.714 0 21.67 ? H15 53W 4000 A 1 HETATM 61 H H16 53W . . . B 2 -11.93 -14.659 2.59 0 21.67 ? H16 53W 4000 A 1 HETATM 62 H H7 53W . . . B 2 -10.167 -8.414 0.027 0 13.43 ? H7 53W 4000 A 1 HETATM 63 H H6 53W . . . B 2 -10.436 -5.991 -0.497 0 14.1 ? H6 53W 4000 A 1 HETATM 64 H H 53W . . . B 2 -11.649 -3.898 0.312 0 17.8 ? H 53W 4000 A 1 HETATM 65 H H1 53W . . . B 2 -13.251 -3.343 -0.189 0 17.8 ? H1 53W 4000 A 1 HETATM 66 H H2 53W . . . B 2 -12.852 -5.067 -0.271 0 17.8 ? H2 53W 4000 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #