data_5CGS # _model_server_result.job_id 70XxjwA0iOGykEyM_K7u-A _model_server_result.datetime_utc '2024-10-10 07:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5CGS # _exptl.entry_id 5CGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.45 _cell.angle_gamma 90 _cell.entry_id 5CGS _cell.length_a 54.854 _cell.length_b 57.085 _cell.length_c 56.747 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 40 A HIS 39 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A OE1 GLU 125 A GLU 124 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A OD2 ASP 127 A ASP 126 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc4 A NE2 HIS 148 A HIS 147 1_555 D ZN ZN . A ZN 403 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A NE2 HIS 161 A HIS 160 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 A ND1 HIS 186 A HIS 185 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 A OD1 ASP 275 A ASP 274 1_555 C ZN ZN . A ZN 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 A OD2 ASP 275 A ASP 274 1_555 C ZN ZN . A ZN 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc9 B ZN ZN . A ZN 401 1_555 F O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 B ZN ZN . A ZN 401 1_555 F O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc12 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CGS _atom_sites.fract_transf_matrix[1][1] 0.01823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 2 ZN ZN . D 2 ZN A 1 403 3 ZN ZN . E 2 ZN A 1 404 4 ZN ZN . F 3 HOH A 1 501 130 HOH HOH . F 3 HOH A 2 502 99 HOH HOH . F 3 HOH A 3 503 4 HOH HOH . F 3 HOH A 4 504 107 HOH HOH . F 3 HOH A 5 505 178 HOH HOH . F 3 HOH A 6 506 153 HOH HOH . F 3 HOH A 7 507 227 HOH HOH . F 3 HOH A 8 508 167 HOH HOH . F 3 HOH A 9 509 63 HOH HOH . F 3 HOH A 10 510 122 HOH HOH . F 3 HOH A 11 511 232 HOH HOH . F 3 HOH A 12 512 132 HOH HOH . F 3 HOH A 13 513 120 HOH HOH . F 3 HOH A 14 514 134 HOH HOH . F 3 HOH A 15 515 25 HOH HOH . F 3 HOH A 16 516 164 HOH HOH . F 3 HOH A 17 517 218 HOH HOH . F 3 HOH A 18 518 189 HOH HOH . F 3 HOH A 19 519 46 HOH HOH . F 3 HOH A 20 520 173 HOH HOH . F 3 HOH A 21 521 41 HOH HOH . F 3 HOH A 22 522 35 HOH HOH . F 3 HOH A 23 523 176 HOH HOH . F 3 HOH A 24 524 83 HOH HOH . F 3 HOH A 25 525 21 HOH HOH . F 3 HOH A 26 526 86 HOH HOH . F 3 HOH A 27 527 72 HOH HOH . F 3 HOH A 28 528 100 HOH HOH . F 3 HOH A 29 529 102 HOH HOH . F 3 HOH A 30 530 9 HOH HOH . F 3 HOH A 31 531 29 HOH HOH . F 3 HOH A 32 532 19 HOH HOH . F 3 HOH A 33 533 177 HOH HOH . F 3 HOH A 34 534 207 HOH HOH . F 3 HOH A 35 535 31 HOH HOH . F 3 HOH A 36 536 24 HOH HOH . F 3 HOH A 37 537 48 HOH HOH . F 3 HOH A 38 538 150 HOH HOH . F 3 HOH A 39 539 151 HOH HOH . F 3 HOH A 40 540 163 HOH HOH . F 3 HOH A 41 541 133 HOH HOH . F 3 HOH A 42 542 230 HOH HOH . F 3 HOH A 43 543 27 HOH HOH . F 3 HOH A 44 544 114 HOH HOH . F 3 HOH A 45 545 89 HOH HOH . F 3 HOH A 46 546 44 HOH HOH . F 3 HOH A 47 547 228 HOH HOH . F 3 HOH A 48 548 49 HOH HOH . F 3 HOH A 49 549 209 HOH HOH . F 3 HOH A 50 550 52 HOH HOH . F 3 HOH A 51 551 57 HOH HOH . F 3 HOH A 52 552 215 HOH HOH . F 3 HOH A 53 553 40 HOH HOH . F 3 HOH A 54 554 56 HOH HOH . F 3 HOH A 55 555 66 HOH HOH . F 3 HOH A 56 556 219 HOH HOH . F 3 HOH A 57 557 36 HOH HOH . F 3 HOH A 58 558 124 HOH HOH . F 3 HOH A 59 559 34 HOH HOH . F 3 HOH A 60 560 135 HOH HOH . F 3 HOH A 61 561 98 HOH HOH . F 3 HOH A 62 562 2 HOH HOH . F 3 HOH A 63 563 233 HOH HOH . F 3 HOH A 64 564 155 HOH HOH . F 3 HOH A 65 565 126 HOH HOH . F 3 HOH A 66 566 43 HOH HOH . F 3 HOH A 67 567 205 HOH HOH . F 3 HOH A 68 568 160 HOH HOH . F 3 HOH A 69 569 58 HOH HOH . F 3 HOH A 70 570 119 HOH HOH . F 3 HOH A 71 571 156 HOH HOH . F 3 HOH A 72 572 22 HOH HOH . F 3 HOH A 73 573 39 HOH HOH . F 3 HOH A 74 574 17 HOH HOH . F 3 HOH A 75 575 50 HOH HOH . F 3 HOH A 76 576 10 HOH HOH . F 3 HOH A 77 577 64 HOH HOH . F 3 HOH A 78 578 32 HOH HOH . F 3 HOH A 79 579 38 HOH HOH . F 3 HOH A 80 580 30 HOH HOH . F 3 HOH A 81 581 80 HOH HOH . F 3 HOH A 82 582 3 HOH HOH . F 3 HOH A 83 583 26 HOH HOH . F 3 HOH A 84 584 191 HOH HOH . F 3 HOH A 85 585 90 HOH HOH . F 3 HOH A 86 586 60 HOH HOH . F 3 HOH A 87 587 226 HOH HOH . F 3 HOH A 88 588 16 HOH HOH . F 3 HOH A 89 589 18 HOH HOH . F 3 HOH A 90 590 161 HOH HOH . F 3 HOH A 91 591 116 HOH HOH . F 3 HOH A 92 592 127 HOH HOH . F 3 HOH A 93 593 172 HOH HOH . F 3 HOH A 94 594 147 HOH HOH . F 3 HOH A 95 595 8 HOH HOH . F 3 HOH A 96 596 136 HOH HOH . F 3 HOH A 97 597 123 HOH HOH . F 3 HOH A 98 598 5 HOH HOH . F 3 HOH A 99 599 175 HOH HOH . F 3 HOH A 100 600 6 HOH HOH . F 3 HOH A 101 601 110 HOH HOH . F 3 HOH A 102 602 11 HOH HOH . F 3 HOH A 103 603 15 HOH HOH . F 3 HOH A 104 604 213 HOH HOH . F 3 HOH A 105 605 14 HOH HOH . F 3 HOH A 106 606 37 HOH HOH . F 3 HOH A 107 607 79 HOH HOH . F 3 HOH A 108 608 149 HOH HOH . F 3 HOH A 109 609 157 HOH HOH . F 3 HOH A 110 610 81 HOH HOH . F 3 HOH A 111 611 168 HOH HOH . F 3 HOH A 112 612 106 HOH HOH . F 3 HOH A 113 613 12 HOH HOH . F 3 HOH A 114 614 73 HOH HOH . F 3 HOH A 115 615 154 HOH HOH . F 3 HOH A 116 616 88 HOH HOH . F 3 HOH A 117 617 142 HOH HOH . F 3 HOH A 118 618 212 HOH HOH . F 3 HOH A 119 619 174 HOH HOH . F 3 HOH A 120 620 143 HOH HOH . F 3 HOH A 121 621 229 HOH HOH . F 3 HOH A 122 622 180 HOH HOH . F 3 HOH A 123 623 61 HOH HOH . F 3 HOH A 124 624 75 HOH HOH . F 3 HOH A 125 625 62 HOH HOH . F 3 HOH A 126 626 51 HOH HOH . F 3 HOH A 127 627 138 HOH HOH . F 3 HOH A 128 628 148 HOH HOH . F 3 HOH A 129 629 7 HOH HOH . F 3 HOH A 130 630 158 HOH HOH . F 3 HOH A 131 631 91 HOH HOH . F 3 HOH A 132 632 20 HOH HOH . F 3 HOH A 133 633 121 HOH HOH . F 3 HOH A 134 634 170 HOH HOH . F 3 HOH A 135 635 159 HOH HOH . F 3 HOH A 136 636 71 HOH HOH . F 3 HOH A 137 637 108 HOH HOH . F 3 HOH A 138 638 141 HOH HOH . F 3 HOH A 139 639 203 HOH HOH . F 3 HOH A 140 640 87 HOH HOH . F 3 HOH A 141 641 199 HOH HOH . F 3 HOH A 142 642 47 HOH HOH . F 3 HOH A 143 643 28 HOH HOH . F 3 HOH A 144 644 194 HOH HOH . F 3 HOH A 145 645 55 HOH HOH . F 3 HOH A 146 646 166 HOH HOH . F 3 HOH A 147 647 146 HOH HOH . F 3 HOH A 148 648 54 HOH HOH . F 3 HOH A 149 649 45 HOH HOH . F 3 HOH A 150 650 92 HOH HOH . F 3 HOH A 151 651 231 HOH HOH . F 3 HOH A 152 652 74 HOH HOH . F 3 HOH A 153 653 67 HOH HOH . F 3 HOH A 154 654 169 HOH HOH . F 3 HOH A 155 655 118 HOH HOH . F 3 HOH A 156 656 145 HOH HOH . F 3 HOH A 157 657 97 HOH HOH . F 3 HOH A 158 658 152 HOH HOH . F 3 HOH A 159 659 109 HOH HOH . F 3 HOH A 160 660 96 HOH HOH . F 3 HOH A 161 661 103 HOH HOH . F 3 HOH A 162 662 125 HOH HOH . F 3 HOH A 163 663 69 HOH HOH . F 3 HOH A 164 664 115 HOH HOH . F 3 HOH A 165 665 200 HOH HOH . F 3 HOH A 166 666 211 HOH HOH . F 3 HOH A 167 667 210 HOH HOH . F 3 HOH A 168 668 195 HOH HOH . F 3 HOH A 169 669 104 HOH HOH . F 3 HOH A 170 670 137 HOH HOH . F 3 HOH A 171 671 171 HOH HOH . F 3 HOH A 172 672 181 HOH HOH . F 3 HOH A 173 673 65 HOH HOH . F 3 HOH A 174 674 187 HOH HOH . F 3 HOH A 175 675 183 HOH HOH . F 3 HOH A 176 676 165 HOH HOH . F 3 HOH A 177 677 68 HOH HOH . F 3 HOH A 178 678 131 HOH HOH . F 3 HOH A 179 679 105 HOH HOH . F 3 HOH A 180 680 140 HOH HOH . F 3 HOH A 181 681 222 HOH HOH . F 3 HOH A 182 682 204 HOH HOH . F 3 HOH A 183 683 185 HOH HOH . F 3 HOH A 184 684 113 HOH HOH . F 3 HOH A 185 685 144 HOH HOH . F 3 HOH A 186 686 223 HOH HOH . F 3 HOH A 187 687 220 HOH HOH . F 3 HOH A 188 688 128 HOH HOH . F 3 HOH A 189 689 193 HOH HOH . F 3 HOH A 190 690 182 HOH HOH . F 3 HOH A 191 691 179 HOH HOH . F 3 HOH A 192 692 186 HOH HOH . F 3 HOH A 193 693 190 HOH HOH . F 3 HOH A 194 694 208 HOH HOH . F 3 HOH A 195 695 214 HOH HOH . F 3 HOH A 196 696 206 HOH HOH . F 3 HOH A 197 697 225 HOH HOH . F 3 HOH A 198 698 139 HOH HOH . F 3 HOH A 199 699 13 HOH HOH . F 3 HOH A 200 700 217 HOH HOH . F 3 HOH A 201 701 101 HOH HOH . F 3 HOH A 202 702 224 HOH HOH . F 3 HOH A 203 703 201 HOH HOH . F 3 HOH A 204 704 53 HOH HOH . F 3 HOH A 205 705 216 HOH HOH . F 3 HOH A 206 706 197 HOH HOH . F 3 HOH A 207 707 184 HOH HOH . F 3 HOH A 208 708 196 HOH HOH . F 3 HOH A 209 709 93 HOH HOH . F 3 HOH A 210 710 94 HOH HOH . F 3 HOH A 211 711 33 HOH HOH . F 3 HOH A 212 712 192 HOH HOH . F 3 HOH A 213 713 162 HOH HOH . F 3 HOH A 214 714 221 HOH HOH . F 3 HOH A 215 715 202 HOH HOH . F 3 HOH A 216 716 198 HOH HOH . F 3 HOH A 217 717 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.544 _atom_site.Cartn_y 4.738 _atom_site.Cartn_z 33.249 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #