data_5CGT # _model_server_result.job_id a1HwEqqexEAOkbSrNOML4Q _model_server_result.datetime_utc '2024-10-16 10:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":711}' # _entry.id 5CGT # _exptl.entry_id 5CGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CGT _cell.length_a 93.5 _cell.length_b 104.9 _cell.length_c 113.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 708 BGC 2 n B GLC 2 B 2 GLC A 707 GLC 2 n C BGC 1 C 1 BGC A 709 BGC 2 n C GLC 2 C 2 GLC A 710 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 43 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale2 C O4 BGC . C BGC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? metalc ? metalc1 A OD1 ASP 27 A ASP 27 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A O ASN 29 A ASN 29 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc3 A OD1 ASN 32 A ASN 32 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A OD1 ASN 33 A ASN 33 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A O GLY 51 A GLY 51 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OD2 ASP 53 A ASP 53 1_555 F CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc7 A OD1 ASN 139 A ASN 139 1_555 E CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc8 A O ILE 190 A ILE 190 1_555 E CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc9 A OD2 ASP 199 A ASP 199 1_555 E CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc10 A OD1 ASP 199 A ASP 199 1_555 E CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc11 A O HIS 233 A HIS 233 1_555 E CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc12 E CA CA . A CA 685 1_555 G O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5CGT _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GLC A 1 711 711 GLC GLC . E 4 CA A 1 685 685 CA CA . F 4 CA A 1 686 686 CA CA . G 5 HOH A 1 712 712 HOH HOH . G 5 HOH A 2 713 713 HOH HOH . G 5 HOH A 3 714 714 HOH HOH . G 5 HOH A 4 715 715 HOH HOH . G 5 HOH A 5 716 716 HOH HOH . G 5 HOH A 6 717 717 HOH HOH . G 5 HOH A 7 718 718 HOH HOH . G 5 HOH A 8 719 719 HOH HOH . G 5 HOH A 9 720 720 HOH HOH . G 5 HOH A 10 721 721 HOH HOH . G 5 HOH A 11 722 722 HOH HOH . G 5 HOH A 12 723 723 HOH HOH . G 5 HOH A 13 724 724 HOH HOH . G 5 HOH A 14 725 725 HOH HOH . G 5 HOH A 15 726 726 HOH HOH . G 5 HOH A 16 727 727 HOH HOH . G 5 HOH A 17 728 728 HOH HOH . G 5 HOH A 18 729 729 HOH HOH . G 5 HOH A 19 730 730 HOH HOH . G 5 HOH A 20 731 731 HOH HOH . G 5 HOH A 21 732 732 HOH HOH . G 5 HOH A 22 733 733 HOH HOH . G 5 HOH A 23 734 734 HOH HOH . G 5 HOH A 24 735 735 HOH HOH . G 5 HOH A 25 736 736 HOH HOH . G 5 HOH A 26 737 737 HOH HOH . G 5 HOH A 27 738 738 HOH HOH . G 5 HOH A 28 739 739 HOH HOH . G 5 HOH A 29 740 740 HOH HOH . G 5 HOH A 30 741 741 HOH HOH . G 5 HOH A 31 742 742 HOH HOH . G 5 HOH A 32 743 743 HOH HOH . G 5 HOH A 33 744 744 HOH HOH . G 5 HOH A 34 745 745 HOH HOH . G 5 HOH A 35 746 746 HOH HOH . G 5 HOH A 36 747 747 HOH HOH . G 5 HOH A 37 748 748 HOH HOH . G 5 HOH A 38 749 749 HOH HOH . G 5 HOH A 39 750 750 HOH HOH . G 5 HOH A 40 751 751 HOH HOH . G 5 HOH A 41 752 752 HOH HOH . G 5 HOH A 42 753 753 HOH HOH . G 5 HOH A 43 754 754 HOH HOH . G 5 HOH A 44 755 755 HOH HOH . G 5 HOH A 45 756 756 HOH HOH . G 5 HOH A 46 757 757 HOH HOH . G 5 HOH A 47 758 758 HOH HOH . G 5 HOH A 48 759 759 HOH HOH . G 5 HOH A 49 760 760 HOH HOH . G 5 HOH A 50 761 761 HOH HOH . G 5 HOH A 51 762 762 HOH HOH . G 5 HOH A 52 763 763 HOH HOH . G 5 HOH A 53 764 764 HOH HOH . G 5 HOH A 54 765 765 HOH HOH . G 5 HOH A 55 766 766 HOH HOH . G 5 HOH A 56 767 767 HOH HOH . G 5 HOH A 57 768 768 HOH HOH . G 5 HOH A 58 769 769 HOH HOH . G 5 HOH A 59 770 770 HOH HOH . G 5 HOH A 60 771 771 HOH HOH . G 5 HOH A 61 772 772 HOH HOH . G 5 HOH A 62 773 773 HOH HOH . G 5 HOH A 63 774 774 HOH HOH . G 5 HOH A 64 775 775 HOH HOH . G 5 HOH A 65 776 776 HOH HOH . G 5 HOH A 66 777 777 HOH HOH . G 5 HOH A 67 778 778 HOH HOH . G 5 HOH A 68 779 779 HOH HOH . G 5 HOH A 69 780 780 HOH HOH . G 5 HOH A 70 781 781 HOH HOH . G 5 HOH A 71 782 782 HOH HOH . G 5 HOH A 72 783 783 HOH HOH . G 5 HOH A 73 784 784 HOH HOH . G 5 HOH A 74 785 785 HOH HOH . G 5 HOH A 75 786 786 HOH HOH . G 5 HOH A 76 787 787 HOH HOH . G 5 HOH A 77 788 788 HOH HOH . G 5 HOH A 78 789 789 HOH HOH . G 5 HOH A 79 790 790 HOH HOH . G 5 HOH A 80 791 791 HOH HOH . G 5 HOH A 81 792 792 HOH HOH . G 5 HOH A 82 793 793 HOH HOH . G 5 HOH A 83 794 794 HOH HOH . G 5 HOH A 84 795 795 HOH HOH . G 5 HOH A 85 796 796 HOH HOH . G 5 HOH A 86 797 797 HOH HOH . G 5 HOH A 87 798 798 HOH HOH . G 5 HOH A 88 799 799 HOH HOH . G 5 HOH A 89 800 800 HOH HOH . G 5 HOH A 90 801 801 HOH HOH . G 5 HOH A 91 802 802 HOH HOH . G 5 HOH A 92 803 803 HOH HOH . G 5 HOH A 93 804 804 HOH HOH . G 5 HOH A 94 805 805 HOH HOH . G 5 HOH A 95 806 806 HOH HOH . G 5 HOH A 96 807 807 HOH HOH . G 5 HOH A 97 808 808 HOH HOH . G 5 HOH A 98 809 809 HOH HOH . G 5 HOH A 99 810 810 HOH HOH . G 5 HOH A 100 811 811 HOH HOH . G 5 HOH A 101 812 812 HOH HOH . G 5 HOH A 102 813 813 HOH HOH . G 5 HOH A 103 814 814 HOH HOH . G 5 HOH A 104 815 815 HOH HOH . G 5 HOH A 105 816 816 HOH HOH . G 5 HOH A 106 817 817 HOH HOH . G 5 HOH A 107 818 818 HOH HOH . G 5 HOH A 108 819 819 HOH HOH . G 5 HOH A 109 820 820 HOH HOH . G 5 HOH A 110 821 821 HOH HOH . G 5 HOH A 111 822 822 HOH HOH . G 5 HOH A 112 823 823 HOH HOH . G 5 HOH A 113 824 824 HOH HOH . G 5 HOH A 114 825 825 HOH HOH . G 5 HOH A 115 826 826 HOH HOH . G 5 HOH A 116 827 827 HOH HOH . G 5 HOH A 117 828 828 HOH HOH . G 5 HOH A 118 829 829 HOH HOH . G 5 HOH A 119 830 830 HOH HOH . G 5 HOH A 120 831 831 HOH HOH . G 5 HOH A 121 832 832 HOH HOH . G 5 HOH A 122 833 833 HOH HOH . G 5 HOH A 123 834 834 HOH HOH . G 5 HOH A 124 835 835 HOH HOH . G 5 HOH A 125 836 836 HOH HOH . G 5 HOH A 126 837 837 HOH HOH . G 5 HOH A 127 838 838 HOH HOH . G 5 HOH A 128 839 839 HOH HOH . G 5 HOH A 129 840 840 HOH HOH . G 5 HOH A 130 841 841 HOH HOH . G 5 HOH A 131 842 842 HOH HOH . G 5 HOH A 132 843 843 HOH HOH . G 5 HOH A 133 844 844 HOH HOH . G 5 HOH A 134 845 845 HOH HOH . G 5 HOH A 135 846 846 HOH HOH . G 5 HOH A 136 847 847 HOH HOH . G 5 HOH A 137 848 848 HOH HOH . G 5 HOH A 138 849 849 HOH HOH . G 5 HOH A 139 850 850 HOH HOH . G 5 HOH A 140 851 851 HOH HOH . G 5 HOH A 141 852 852 HOH HOH . G 5 HOH A 142 853 853 HOH HOH . G 5 HOH A 143 854 854 HOH HOH . G 5 HOH A 144 855 855 HOH HOH . G 5 HOH A 145 856 856 HOH HOH . G 5 HOH A 146 857 857 HOH HOH . G 5 HOH A 147 858 858 HOH HOH . G 5 HOH A 148 859 859 HOH HOH . G 5 HOH A 149 860 860 HOH HOH . G 5 HOH A 150 861 861 HOH HOH . G 5 HOH A 151 862 862 HOH HOH . G 5 HOH A 152 863 863 HOH HOH . G 5 HOH A 153 864 864 HOH HOH . G 5 HOH A 154 865 865 HOH HOH . G 5 HOH A 155 866 866 HOH HOH . G 5 HOH A 156 867 867 HOH HOH . G 5 HOH A 157 868 868 HOH HOH . G 5 HOH A 158 869 869 HOH HOH . G 5 HOH A 159 870 870 HOH HOH . G 5 HOH A 160 871 871 HOH HOH . G 5 HOH A 161 872 872 HOH HOH . G 5 HOH A 162 873 873 HOH HOH . G 5 HOH A 163 874 874 HOH HOH . G 5 HOH A 164 875 875 HOH HOH . G 5 HOH A 165 876 876 HOH HOH . G 5 HOH A 166 877 877 HOH HOH . G 5 HOH A 167 878 878 HOH HOH . G 5 HOH A 168 879 879 HOH HOH . G 5 HOH A 169 880 880 HOH HOH . G 5 HOH A 170 881 881 HOH HOH . G 5 HOH A 171 882 882 HOH HOH . G 5 HOH A 172 883 883 HOH HOH . G 5 HOH A 173 884 884 HOH HOH . G 5 HOH A 174 885 885 HOH HOH . G 5 HOH A 175 886 886 HOH HOH . G 5 HOH A 176 887 887 HOH HOH . G 5 HOH A 177 888 888 HOH HOH . G 5 HOH A 178 889 889 HOH HOH . G 5 HOH A 179 890 890 HOH HOH . G 5 HOH A 180 891 891 HOH HOH . G 5 HOH A 181 892 892 HOH HOH . G 5 HOH A 182 893 893 HOH HOH . G 5 HOH A 183 894 894 HOH HOH . G 5 HOH A 184 895 895 HOH HOH . G 5 HOH A 185 896 896 HOH HOH . G 5 HOH A 186 897 897 HOH HOH . G 5 HOH A 187 898 898 HOH HOH . G 5 HOH A 188 899 899 HOH HOH . G 5 HOH A 189 900 900 HOH HOH . G 5 HOH A 190 901 901 HOH HOH . G 5 HOH A 191 902 902 HOH HOH . G 5 HOH A 192 903 903 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . D 3 58.78 17 9.94 1 33.08 ? C1 GLC 711 A 1 HETATM 2 C C2 GLC . . . D 3 58.908 17.818 11.233 1 32.75 ? C2 GLC 711 A 1 HETATM 3 C C3 GLC . . . D 3 60.065 17.319 12.146 1 32.21 ? C3 GLC 711 A 1 HETATM 4 C C4 GLC . . . D 3 60.194 15.792 12.194 1 32.32 ? C4 GLC 711 A 1 HETATM 5 C C5 GLC . . . D 3 59.958 15.106 10.834 1 34.09 ? C5 GLC 711 A 1 HETATM 6 C C6 GLC . . . D 3 59.793 13.582 10.959 1 32.93 ? C6 GLC 711 A 1 HETATM 7 O O1 GLC . . . D 3 59.838 17.257 9.073 1 35.32 ? O1 GLC 711 A 1 HETATM 8 O O2 GLC . . . D 3 59.12 19.186 10.887 1 31.42 ? O2 GLC 711 A 1 HETATM 9 O O3 GLC . . . D 3 59.873 17.785 13.48 1 28.62 ? O3 GLC 711 A 1 HETATM 10 O O4 GLC . . . D 3 61.498 15.47 12.645 1 31.84 ? O4 GLC 711 A 1 HETATM 11 O O5 GLC . . . D 3 58.744 15.598 10.224 1 35.2 ? O5 GLC 711 A 1 HETATM 12 O O6 GLC . . . D 3 60.996 12.886 10.655 1 36.51 ? O6 GLC 711 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #