data_5CGV # _model_server_result.job_id 8dPfKTbaWkY9DuxbSyw4JA _model_server_result.datetime_utc '2024-11-28 06:20:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5CGV # _exptl.entry_id 5CGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.894 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CGV _cell.length_a 73.899 _cell.length_b 73.899 _cell.length_c 127.457 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O26 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O27 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc11 C MN MN . A MN 302 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 C MN MN . A MN 302 1_555 F O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C23 H24 Cl N O4' _chem_comp.formula_weight 413.894 _chem_comp.id 0N8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 0N8 doub 1 n y C6 C5 0N8 sing 2 n y C1 C2 0N8 sing 3 n y O27 C14 0N8 doub 4 n n C12 C13 0N8 sing 5 n n C12 C11 0N8 sing 6 n n C5 C4 0N8 doub 7 n y C13 N8 0N8 sing 8 n n C2 C7 0N8 sing 9 n n C2 C3 0N8 doub 10 n y O28 C23 0N8 sing 11 n n C7 N8 0N8 sing 12 n n C15 C11 0N8 sing 13 n n C15 C16 0N8 sing 14 n n C14 C11 0N8 sing 15 n n C14 C22 0N8 sing 16 n n C11 C10 0N8 sing 17 n n N8 C9 0N8 sing 18 n n C4 C3 0N8 sing 19 n y C16 C21 0N8 doub 20 n y C16 C17 0N8 sing 21 n y C23 C22 0N8 doub 22 z n C23 C24 0N8 sing 23 n n C21 C20 0N8 sing 24 n y C17 C18 0N8 doub 25 n y O25 C24 0N8 doub 26 n n C10 C9 0N8 sing 27 n n C24 O26 0N8 sing 28 n n C20 C19 0N8 doub 29 n y C18 C19 0N8 sing 30 n y C19 CL2 0N8 sing 31 n n C18 H1 0N8 sing 32 n n C17 H2 0N8 sing 33 n n C20 H3 0N8 sing 34 n n C21 H4 0N8 sing 35 n n C15 H5 0N8 sing 36 n n C15 H6 0N8 sing 37 n n C10 H7 0N8 sing 38 n n C10 H8 0N8 sing 39 n n C9 H9 0N8 sing 40 n n C9 H10 0N8 sing 41 n n C22 H11 0N8 sing 42 n n O28 H14 0N8 sing 43 n n O26 H15 0N8 sing 44 n n C12 H16 0N8 sing 45 n n C12 H17 0N8 sing 46 n n C13 H18 0N8 sing 47 n n C13 H19 0N8 sing 48 n n C7 H21 0N8 sing 49 n n C7 H22 0N8 sing 50 n n C3 H23 0N8 sing 51 n n C4 H24 0N8 sing 52 n n C5 H25 0N8 sing 53 n n C6 H26 0N8 sing 54 n n C1 H27 0N8 sing 55 n n # _atom_sites.entry_id 5CGV _atom_sites.fract_transf_matrix[1][1] 0.013532 _atom_sites.fract_transf_matrix[1][2] 0.007813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 201 MN MN . C 2 MN A 1 302 202 MN MN . D 3 0N8 A 1 303 1 0N8 0N8 . E 4 GOL A 1 304 1 GOL GOL . F 5 HOH A 1 401 1 HOH HOH . F 5 HOH A 2 402 5 HOH HOH . F 5 HOH A 3 403 42 HOH HOH . F 5 HOH A 4 404 51 HOH HOH . F 5 HOH A 5 405 18 HOH HOH . F 5 HOH A 6 406 12 HOH HOH . F 5 HOH A 7 407 36 HOH HOH . F 5 HOH A 8 408 64 HOH HOH . F 5 HOH A 9 409 45 HOH HOH . F 5 HOH A 10 410 8 HOH HOH . F 5 HOH A 11 411 17 HOH HOH . F 5 HOH A 12 412 11 HOH HOH . F 5 HOH A 13 413 68 HOH HOH . F 5 HOH A 14 414 54 HOH HOH . F 5 HOH A 15 415 57 HOH HOH . F 5 HOH A 16 416 6 HOH HOH . F 5 HOH A 17 417 4 HOH HOH . F 5 HOH A 18 418 9 HOH HOH . F 5 HOH A 19 419 22 HOH HOH . F 5 HOH A 20 420 33 HOH HOH . F 5 HOH A 21 421 26 HOH HOH . F 5 HOH A 22 422 59 HOH HOH . F 5 HOH A 23 423 44 HOH HOH . F 5 HOH A 24 424 39 HOH HOH . F 5 HOH A 25 425 3 HOH HOH . F 5 HOH A 26 426 63 HOH HOH . F 5 HOH A 27 427 10 HOH HOH . F 5 HOH A 28 428 2 HOH HOH . F 5 HOH A 29 429 58 HOH HOH . F 5 HOH A 30 430 16 HOH HOH . F 5 HOH A 31 431 38 HOH HOH . F 5 HOH A 32 432 66 HOH HOH . F 5 HOH A 33 433 56 HOH HOH . F 5 HOH A 34 434 40 HOH HOH . F 5 HOH A 35 435 53 HOH HOH . F 5 HOH A 36 436 20 HOH HOH . F 5 HOH A 37 437 23 HOH HOH . F 5 HOH A 38 438 61 HOH HOH . F 5 HOH A 39 439 52 HOH HOH . F 5 HOH A 40 440 28 HOH HOH . F 5 HOH A 41 441 21 HOH HOH . F 5 HOH A 42 442 55 HOH HOH . F 5 HOH A 43 443 27 HOH HOH . F 5 HOH A 44 444 65 HOH HOH . F 5 HOH A 45 445 69 HOH HOH . F 5 HOH A 46 446 35 HOH HOH . F 5 HOH A 47 447 29 HOH HOH . F 5 HOH A 48 448 48 HOH HOH . F 5 HOH A 49 449 49 HOH HOH . F 5 HOH A 50 450 19 HOH HOH . F 5 HOH A 51 451 50 HOH HOH . F 5 HOH A 52 452 30 HOH HOH . F 5 HOH A 53 453 15 HOH HOH . F 5 HOH A 54 454 34 HOH HOH . F 5 HOH A 55 455 60 HOH HOH . F 5 HOH A 56 456 25 HOH HOH . F 5 HOH A 57 457 47 HOH HOH . F 5 HOH A 58 458 46 HOH HOH . F 5 HOH A 59 459 24 HOH HOH . F 5 HOH A 60 460 62 HOH HOH . F 5 HOH A 61 461 14 HOH HOH . F 5 HOH A 62 462 67 HOH HOH . F 5 HOH A 63 463 7 HOH HOH . F 5 HOH A 64 464 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 0N8 . . . D 3 -32.005 -12.236 19.755 1 57.89 ? CL2 0N8 303 A 1 HETATM 2 C C19 0N8 . . . D 3 -30.929 -13.657 20 1 45.72 ? C19 0N8 303 A 1 HETATM 3 C C18 0N8 . . . D 3 -29.568 -13.505 20.215 1 41.57 ? C18 0N8 303 A 1 HETATM 4 C C17 0N8 . . . D 3 -28.734 -14.565 20.362 1 39.7 ? C17 0N8 303 A 1 HETATM 5 C C20 0N8 . . . D 3 -31.442 -14.943 19.971 1 44.45 ? C20 0N8 303 A 1 HETATM 6 C C21 0N8 . . . D 3 -30.599 -16.015 20.139 1 42.84 ? C21 0N8 303 A 1 HETATM 7 C C16 0N8 . . . D 3 -29.253 -15.823 20.343 1 39.71 ? C16 0N8 303 A 1 HETATM 8 C C15 0N8 . . . D 3 -28.368 -17.02 20.534 1 38.14 ? C15 0N8 303 A 1 HETATM 9 C C11 0N8 . . . D 3 -27.817 -17.577 19.209 1 37.56 ? C11 0N8 303 A 1 HETATM 10 C C10 0N8 . . . D 3 -28.881 -18.15 18.149 1 36.32 ? C10 0N8 303 A 1 HETATM 11 C C9 0N8 . . . D 3 -28.28 -19.182 17.182 1 39.12 ? C9 0N8 303 A 1 HETATM 12 C C14 0N8 . . . D 3 -26.851 -16.513 18.679 1 34.76 ? C14 0N8 303 A 1 HETATM 13 O O27 0N8 . . . D 3 -25.735 -16.431 19.161 1 34.27 ? O27 0N8 303 A 1 HETATM 14 C C22 0N8 . . . D 3 -27.353 -15.586 17.594 1 31.74 ? C22 0N8 303 A 1 HETATM 15 C C23 0N8 . . . D 3 -26.733 -14.483 17.14 1 29.7 ? C23 0N8 303 A 1 HETATM 16 O O28 0N8 . . . D 3 -25.489 -14.166 17.577 1 30.6 ? O28 0N8 303 A 1 HETATM 17 C C24 0N8 . . . D 3 -27.385 -13.603 16.118 1 27.83 ? C24 0N8 303 A 1 HETATM 18 O O26 0N8 . . . D 3 -26.944 -12.511 15.664 1 28.33 ? O26 0N8 303 A 1 HETATM 19 O O25 0N8 . . . D 3 -28.462 -13.968 15.689 1 27.26 ? O25 0N8 303 A 1 HETATM 20 C C12 0N8 . . . D 3 -27.027 -18.814 19.691 1 35.85 ? C12 0N8 303 A 1 HETATM 21 C C13 0N8 . . . D 3 -26.284 -19.462 18.544 1 39.12 ? C13 0N8 303 A 1 HETATM 22 N N8 0N8 . . . D 3 -26.856 -19.412 17.228 1 42.35 ? N8 0N8 303 A 1 HETATM 23 C C7 0N8 . . . D 3 -26.335 -20.608 16.476 1 46.91 ? C7 0N8 303 A 1 HETATM 24 C C2 0N8 . . . D 3 -26.993 -20.941 15.126 1 53.17 ? C2 0N8 303 A 1 HETATM 25 C C3 0N8 . . . D 3 -27.715 -22.161 14.971 1 54.45 ? C3 0N8 303 A 1 HETATM 26 C C4 0N8 . . . D 3 -28.362 -22.511 13.765 1 53.08 ? C4 0N8 303 A 1 HETATM 27 C C5 0N8 . . . D 3 -28.298 -21.642 12.716 1 51.29 ? C5 0N8 303 A 1 HETATM 28 C C6 0N8 . . . D 3 -27.587 -20.433 12.846 1 53.41 ? C6 0N8 303 A 1 HETATM 29 C C1 0N8 . . . D 3 -26.914 -20.066 14.028 1 53.58 ? C1 0N8 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #