data_5CGV
#
_model_server_result.job_id            lgU1bJphYMPa-R1Nvusmmw 
_model_server_result.datetime_utc      '2024-11-13 19:22:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cgv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5CGV 
#
_exptl.entry_id    5CGV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.894 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CGV 
_cell.length_a            73.899 
_cell.length_b            73.899 
_cell.length_c            127.457 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CGV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc7 B MN MN . A MN 301 1_555 D O26 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B MN MN . A MN 301 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 C MN MN . A MN 302 1_555 D O27 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc11 C MN MN . A MN 302 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 F O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C23 H24 Cl N O4' 
_chem_comp.formula_weight    413.894 
_chem_comp.id                0N8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C1 0N8 doub 1 n y 
C6 C5 0N8 sing 2 n y 
C1 C2 0N8 sing 3 n y 
O27 C14 0N8 doub 4 n n 
C12 C13 0N8 sing 5 n n 
C12 C11 0N8 sing 6 n n 
C5 C4 0N8 doub 7 n y 
C13 N8 0N8 sing 8 n n 
C2 C7 0N8 sing 9 n n 
C2 C3 0N8 doub 10 n y 
O28 C23 0N8 sing 11 n n 
C7 N8 0N8 sing 12 n n 
C15 C11 0N8 sing 13 n n 
C15 C16 0N8 sing 14 n n 
C14 C11 0N8 sing 15 n n 
C14 C22 0N8 sing 16 n n 
C11 C10 0N8 sing 17 n n 
N8 C9 0N8 sing 18 n n 
C4 C3 0N8 sing 19 n y 
C16 C21 0N8 doub 20 n y 
C16 C17 0N8 sing 21 n y 
C23 C22 0N8 doub 22 z n 
C23 C24 0N8 sing 23 n n 
C21 C20 0N8 sing 24 n y 
C17 C18 0N8 doub 25 n y 
O25 C24 0N8 doub 26 n n 
C10 C9 0N8 sing 27 n n 
C24 O26 0N8 sing 28 n n 
C20 C19 0N8 doub 29 n y 
C18 C19 0N8 sing 30 n y 
C19 CL2 0N8 sing 31 n n 
C18 H1 0N8 sing 32 n n 
C17 H2 0N8 sing 33 n n 
C20 H3 0N8 sing 34 n n 
C21 H4 0N8 sing 35 n n 
C15 H5 0N8 sing 36 n n 
C15 H6 0N8 sing 37 n n 
C10 H7 0N8 sing 38 n n 
C10 H8 0N8 sing 39 n n 
C9 H9 0N8 sing 40 n n 
C9 H10 0N8 sing 41 n n 
C22 H11 0N8 sing 42 n n 
O28 H14 0N8 sing 43 n n 
O26 H15 0N8 sing 44 n n 
C12 H16 0N8 sing 45 n n 
C12 H17 0N8 sing 46 n n 
C13 H18 0N8 sing 47 n n 
C13 H19 0N8 sing 48 n n 
C7 H21 0N8 sing 49 n n 
C7 H22 0N8 sing 50 n n 
C3 H23 0N8 sing 51 n n 
C4 H24 0N8 sing 52 n n 
C5 H25 0N8 sing 53 n n 
C6 H26 0N8 sing 54 n n 
C1 H27 0N8 sing 55 n n 
#
_atom_sites.entry_id                     5CGV 
_atom_sites.fract_transf_matrix[1][1]    0.013532 
_atom_sites.fract_transf_matrix[1][2]    0.007813 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 201 MN MN . 
C 2 MN A 1 302 202 MN MN . 
D 3 0N8 A 1 303 1 0N8 0N8 . 
E 4 GOL A 1 304 1 GOL GOL . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 5 HOH HOH . 
F 5 HOH A 3 403 42 HOH HOH . 
F 5 HOH A 4 404 51 HOH HOH . 
F 5 HOH A 5 405 18 HOH HOH . 
F 5 HOH A 6 406 12 HOH HOH . 
F 5 HOH A 7 407 36 HOH HOH . 
F 5 HOH A 8 408 64 HOH HOH . 
F 5 HOH A 9 409 45 HOH HOH . 
F 5 HOH A 10 410 8 HOH HOH . 
F 5 HOH A 11 411 17 HOH HOH . 
F 5 HOH A 12 412 11 HOH HOH . 
F 5 HOH A 13 413 68 HOH HOH . 
F 5 HOH A 14 414 54 HOH HOH . 
F 5 HOH A 15 415 57 HOH HOH . 
F 5 HOH A 16 416 6 HOH HOH . 
F 5 HOH A 17 417 4 HOH HOH . 
F 5 HOH A 18 418 9 HOH HOH . 
F 5 HOH A 19 419 22 HOH HOH . 
F 5 HOH A 20 420 33 HOH HOH . 
F 5 HOH A 21 421 26 HOH HOH . 
F 5 HOH A 22 422 59 HOH HOH . 
F 5 HOH A 23 423 44 HOH HOH . 
F 5 HOH A 24 424 39 HOH HOH . 
F 5 HOH A 25 425 3 HOH HOH . 
F 5 HOH A 26 426 63 HOH HOH . 
F 5 HOH A 27 427 10 HOH HOH . 
F 5 HOH A 28 428 2 HOH HOH . 
F 5 HOH A 29 429 58 HOH HOH . 
F 5 HOH A 30 430 16 HOH HOH . 
F 5 HOH A 31 431 38 HOH HOH . 
F 5 HOH A 32 432 66 HOH HOH . 
F 5 HOH A 33 433 56 HOH HOH . 
F 5 HOH A 34 434 40 HOH HOH . 
F 5 HOH A 35 435 53 HOH HOH . 
F 5 HOH A 36 436 20 HOH HOH . 
F 5 HOH A 37 437 23 HOH HOH . 
F 5 HOH A 38 438 61 HOH HOH . 
F 5 HOH A 39 439 52 HOH HOH . 
F 5 HOH A 40 440 28 HOH HOH . 
F 5 HOH A 41 441 21 HOH HOH . 
F 5 HOH A 42 442 55 HOH HOH . 
F 5 HOH A 43 443 27 HOH HOH . 
F 5 HOH A 44 444 65 HOH HOH . 
F 5 HOH A 45 445 69 HOH HOH . 
F 5 HOH A 46 446 35 HOH HOH . 
F 5 HOH A 47 447 29 HOH HOH . 
F 5 HOH A 48 448 48 HOH HOH . 
F 5 HOH A 49 449 49 HOH HOH . 
F 5 HOH A 50 450 19 HOH HOH . 
F 5 HOH A 51 451 50 HOH HOH . 
F 5 HOH A 52 452 30 HOH HOH . 
F 5 HOH A 53 453 15 HOH HOH . 
F 5 HOH A 54 454 34 HOH HOH . 
F 5 HOH A 55 455 60 HOH HOH . 
F 5 HOH A 56 456 25 HOH HOH . 
F 5 HOH A 57 457 47 HOH HOH . 
F 5 HOH A 58 458 46 HOH HOH . 
F 5 HOH A 59 459 24 HOH HOH . 
F 5 HOH A 60 460 62 HOH HOH . 
F 5 HOH A 61 461 14 HOH HOH . 
F 5 HOH A 62 462 67 HOH HOH . 
F 5 HOH A 63 463 7 HOH HOH . 
F 5 HOH A 64 464 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL2 0N8 . . . D 3 -32.005 -12.236 19.755 1 57.89 ? CL2 0N8 303 A 1 
HETATM 2 C C19 0N8 . . . D 3 -30.929 -13.657 20 1 45.72 ? C19 0N8 303 A 1 
HETATM 3 C C18 0N8 . . . D 3 -29.568 -13.505 20.215 1 41.57 ? C18 0N8 303 A 1 
HETATM 4 C C17 0N8 . . . D 3 -28.734 -14.565 20.362 1 39.7 ? C17 0N8 303 A 1 
HETATM 5 C C20 0N8 . . . D 3 -31.442 -14.943 19.971 1 44.45 ? C20 0N8 303 A 1 
HETATM 6 C C21 0N8 . . . D 3 -30.599 -16.015 20.139 1 42.84 ? C21 0N8 303 A 1 
HETATM 7 C C16 0N8 . . . D 3 -29.253 -15.823 20.343 1 39.71 ? C16 0N8 303 A 1 
HETATM 8 C C15 0N8 . . . D 3 -28.368 -17.02 20.534 1 38.14 ? C15 0N8 303 A 1 
HETATM 9 C C11 0N8 . . . D 3 -27.817 -17.577 19.209 1 37.56 ? C11 0N8 303 A 1 
HETATM 10 C C10 0N8 . . . D 3 -28.881 -18.15 18.149 1 36.32 ? C10 0N8 303 A 1 
HETATM 11 C C9 0N8 . . . D 3 -28.28 -19.182 17.182 1 39.12 ? C9 0N8 303 A 1 
HETATM 12 C C14 0N8 . . . D 3 -26.851 -16.513 18.679 1 34.76 ? C14 0N8 303 A 1 
HETATM 13 O O27 0N8 . . . D 3 -25.735 -16.431 19.161 1 34.27 ? O27 0N8 303 A 1 
HETATM 14 C C22 0N8 . . . D 3 -27.353 -15.586 17.594 1 31.74 ? C22 0N8 303 A 1 
HETATM 15 C C23 0N8 . . . D 3 -26.733 -14.483 17.14 1 29.7 ? C23 0N8 303 A 1 
HETATM 16 O O28 0N8 . . . D 3 -25.489 -14.166 17.577 1 30.6 ? O28 0N8 303 A 1 
HETATM 17 C C24 0N8 . . . D 3 -27.385 -13.603 16.118 1 27.83 ? C24 0N8 303 A 1 
HETATM 18 O O26 0N8 . . . D 3 -26.944 -12.511 15.664 1 28.33 ? O26 0N8 303 A 1 
HETATM 19 O O25 0N8 . . . D 3 -28.462 -13.968 15.689 1 27.26 ? O25 0N8 303 A 1 
HETATM 20 C C12 0N8 . . . D 3 -27.027 -18.814 19.691 1 35.85 ? C12 0N8 303 A 1 
HETATM 21 C C13 0N8 . . . D 3 -26.284 -19.462 18.544 1 39.12 ? C13 0N8 303 A 1 
HETATM 22 N N8 0N8 . . . D 3 -26.856 -19.412 17.228 1 42.35 ? N8 0N8 303 A 1 
HETATM 23 C C7 0N8 . . . D 3 -26.335 -20.608 16.476 1 46.91 ? C7 0N8 303 A 1 
HETATM 24 C C2 0N8 . . . D 3 -26.993 -20.941 15.126 1 53.17 ? C2 0N8 303 A 1 
HETATM 25 C C3 0N8 . . . D 3 -27.715 -22.161 14.971 1 54.45 ? C3 0N8 303 A 1 
HETATM 26 C C4 0N8 . . . D 3 -28.362 -22.511 13.765 1 53.08 ? C4 0N8 303 A 1 
HETATM 27 C C5 0N8 . . . D 3 -28.298 -21.642 12.716 1 51.29 ? C5 0N8 303 A 1 
HETATM 28 C C6 0N8 . . . D 3 -27.587 -20.433 12.846 1 53.41 ? C6 0N8 303 A 1 
HETATM 29 C C1 0N8 . . . D 3 -26.914 -20.066 14.028 1 53.58 ? C1 0N8 303 A 1 
#
_model_server_stats.io_time_ms              114 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#