data_5CGV
#
_model_server_result.job_id            ZOiQAaWvtSeyfKVfiDKG5A 
_model_server_result.datetime_utc      '2024-11-13 19:40:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cgv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5CGV 
#
_exptl.entry_id    5CGV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CGV 
_cell.length_a            73.899 
_cell.length_b            73.899 
_cell.length_c            127.457 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CGV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc7 B MN MN . A MN 301 1_555 D O26 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B MN MN . A MN 301 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 C MN MN . A MN 302 1_555 D O27 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 D O28 0N8 . A 0N8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc11 C MN MN . A MN 302 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 F O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 184 n n 
C1 C2 GOL sing 185 n n 
C1 H11 GOL sing 186 n n 
C1 H12 GOL sing 187 n n 
O1 HO1 GOL sing 188 n n 
C2 O2 GOL sing 189 n n 
C2 C3 GOL sing 190 n n 
C2 H2 GOL sing 191 n n 
O2 HO2 GOL sing 192 n n 
C3 O3 GOL sing 193 n n 
C3 H31 GOL sing 194 n n 
C3 H32 GOL sing 195 n n 
O3 HO3 GOL sing 196 n n 
#
_atom_sites.entry_id                     5CGV 
_atom_sites.fract_transf_matrix[1][1]    0.013532 
_atom_sites.fract_transf_matrix[1][2]    0.007813 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 201 MN MN . 
C 2 MN A 1 302 202 MN MN . 
D 3 0N8 A 1 303 1 0N8 0N8 . 
E 4 GOL A 1 304 1 GOL GOL . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 5 HOH HOH . 
F 5 HOH A 3 403 42 HOH HOH . 
F 5 HOH A 4 404 51 HOH HOH . 
F 5 HOH A 5 405 18 HOH HOH . 
F 5 HOH A 6 406 12 HOH HOH . 
F 5 HOH A 7 407 36 HOH HOH . 
F 5 HOH A 8 408 64 HOH HOH . 
F 5 HOH A 9 409 45 HOH HOH . 
F 5 HOH A 10 410 8 HOH HOH . 
F 5 HOH A 11 411 17 HOH HOH . 
F 5 HOH A 12 412 11 HOH HOH . 
F 5 HOH A 13 413 68 HOH HOH . 
F 5 HOH A 14 414 54 HOH HOH . 
F 5 HOH A 15 415 57 HOH HOH . 
F 5 HOH A 16 416 6 HOH HOH . 
F 5 HOH A 17 417 4 HOH HOH . 
F 5 HOH A 18 418 9 HOH HOH . 
F 5 HOH A 19 419 22 HOH HOH . 
F 5 HOH A 20 420 33 HOH HOH . 
F 5 HOH A 21 421 26 HOH HOH . 
F 5 HOH A 22 422 59 HOH HOH . 
F 5 HOH A 23 423 44 HOH HOH . 
F 5 HOH A 24 424 39 HOH HOH . 
F 5 HOH A 25 425 3 HOH HOH . 
F 5 HOH A 26 426 63 HOH HOH . 
F 5 HOH A 27 427 10 HOH HOH . 
F 5 HOH A 28 428 2 HOH HOH . 
F 5 HOH A 29 429 58 HOH HOH . 
F 5 HOH A 30 430 16 HOH HOH . 
F 5 HOH A 31 431 38 HOH HOH . 
F 5 HOH A 32 432 66 HOH HOH . 
F 5 HOH A 33 433 56 HOH HOH . 
F 5 HOH A 34 434 40 HOH HOH . 
F 5 HOH A 35 435 53 HOH HOH . 
F 5 HOH A 36 436 20 HOH HOH . 
F 5 HOH A 37 437 23 HOH HOH . 
F 5 HOH A 38 438 61 HOH HOH . 
F 5 HOH A 39 439 52 HOH HOH . 
F 5 HOH A 40 440 28 HOH HOH . 
F 5 HOH A 41 441 21 HOH HOH . 
F 5 HOH A 42 442 55 HOH HOH . 
F 5 HOH A 43 443 27 HOH HOH . 
F 5 HOH A 44 444 65 HOH HOH . 
F 5 HOH A 45 445 69 HOH HOH . 
F 5 HOH A 46 446 35 HOH HOH . 
F 5 HOH A 47 447 29 HOH HOH . 
F 5 HOH A 48 448 48 HOH HOH . 
F 5 HOH A 49 449 49 HOH HOH . 
F 5 HOH A 50 450 19 HOH HOH . 
F 5 HOH A 51 451 50 HOH HOH . 
F 5 HOH A 52 452 30 HOH HOH . 
F 5 HOH A 53 453 15 HOH HOH . 
F 5 HOH A 54 454 34 HOH HOH . 
F 5 HOH A 55 455 60 HOH HOH . 
F 5 HOH A 56 456 25 HOH HOH . 
F 5 HOH A 57 457 47 HOH HOH . 
F 5 HOH A 58 458 46 HOH HOH . 
F 5 HOH A 59 459 24 HOH HOH . 
F 5 HOH A 60 460 62 HOH HOH . 
F 5 HOH A 61 461 14 HOH HOH . 
F 5 HOH A 62 462 67 HOH HOH . 
F 5 HOH A 63 463 7 HOH HOH . 
F 5 HOH A 64 464 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -26.938 -14.252 10.839 1 43.86 ? C1 GOL 304 A 1 
HETATM 2 O O1 GOL . . . E 4 -26.968 -12.872 11.193 1 38.03 ? O1 GOL 304 A 1 
HETATM 3 C C2 GOL . . . E 4 -27.418 -15.192 11.947 1 46.69 ? C2 GOL 304 A 1 
HETATM 4 O O2 GOL . . . E 4 -27.689 -16.431 11.297 1 51.96 ? O2 GOL 304 A 1 
HETATM 5 C C3 GOL . . . E 4 -26.378 -15.447 13.047 1 47.01 ? C3 GOL 304 A 1 
HETATM 6 O O3 GOL . . . E 4 -26.677 -16.626 13.803 1 42.09 ? O3 GOL 304 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#