data_5CH8 # _model_server_result.job_id NGW3l5HZWo49hV7P5f6mpg _model_server_result.datetime_utc '2024-12-22 05:19:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ch8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 5CH8 # _exptl.entry_id 5CH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 61.27 _cell.angle_beta 68.65 _cell.angle_gamma 78.17 _cell.entry_id 5CH8 _cell.length_a 33.33 _cell.length_b 44.52 _cell.length_c 44.76 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 103 A CYS 103 1_555 A SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 C ZN ZN . A ZN 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 A OE2 GLU 43 A GLU 43 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc3 A OE1 GLU 129 A GLU 129 1_555 B ZN ZN . A ZN 301 1_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A OE2 GLU 129 A GLU 129 1_555 B ZN ZN . A ZN 301 1_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc5 A OD2 ASP 237 A ASP 237 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 A OD2 ASP 239 A ASP 239 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 J O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 J O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CH8 _atom_sites.fract_transf_matrix[1][1] 0.030003 _atom_sites.fract_transf_matrix[1][2] -0.006284 _atom_sites.fract_transf_matrix[1][3] -0.009972 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022949 _atom_sites.fract_transf_matrix[2][3] -0.01142 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 2 ZN A 1 302 2 ZN ZN . D 3 CL A 1 303 1 CL CL . E 3 CL A 1 304 2 CL CL . F 3 CL A 1 305 3 CL CL . G 3 CL A 1 306 4 CL CL . H 3 CL A 1 307 6 CL CL . I 4 GOL A 1 308 1 GOL GOL . J 5 HOH A 1 401 187 HOH HOH . J 5 HOH A 2 402 203 HOH HOH . J 5 HOH A 3 403 139 HOH HOH . J 5 HOH A 4 404 339 HOH HOH . J 5 HOH A 5 405 196 HOH HOH . J 5 HOH A 6 406 221 HOH HOH . J 5 HOH A 7 407 149 HOH HOH . J 5 HOH A 8 408 323 HOH HOH . J 5 HOH A 9 409 151 HOH HOH . J 5 HOH A 10 410 186 HOH HOH . J 5 HOH A 11 411 192 HOH HOH . J 5 HOH A 12 412 163 HOH HOH . J 5 HOH A 13 413 71 HOH HOH . J 5 HOH A 14 414 322 HOH HOH . J 5 HOH A 15 415 4 HOH HOH . J 5 HOH A 16 416 64 HOH HOH . J 5 HOH A 17 417 7 HOH HOH . J 5 HOH A 18 418 170 HOH HOH . J 5 HOH A 19 419 188 HOH HOH . J 5 HOH A 20 420 41 HOH HOH . J 5 HOH A 21 421 83 HOH HOH . J 5 HOH A 22 422 332 HOH HOH . J 5 HOH A 23 423 147 HOH HOH . J 5 HOH A 24 424 17 HOH HOH . J 5 HOH A 25 425 72 HOH HOH . J 5 HOH A 26 426 175 HOH HOH . J 5 HOH A 27 427 78 HOH HOH . J 5 HOH A 28 428 49 HOH HOH . J 5 HOH A 29 429 58 HOH HOH . J 5 HOH A 30 430 171 HOH HOH . J 5 HOH A 31 431 21 HOH HOH . J 5 HOH A 32 432 56 HOH HOH . J 5 HOH A 33 433 168 HOH HOH . J 5 HOH A 34 434 54 HOH HOH . J 5 HOH A 35 435 25 HOH HOH . J 5 HOH A 36 436 101 HOH HOH . J 5 HOH A 37 437 77 HOH HOH . J 5 HOH A 38 438 39 HOH HOH . J 5 HOH A 39 439 131 HOH HOH . J 5 HOH A 40 440 238 HOH HOH . J 5 HOH A 41 441 20 HOH HOH . J 5 HOH A 42 442 312 HOH HOH . J 5 HOH A 43 443 29 HOH HOH . J 5 HOH A 44 444 57 HOH HOH . J 5 HOH A 45 445 22 HOH HOH . J 5 HOH A 46 446 310 HOH HOH . J 5 HOH A 47 447 66 HOH HOH . J 5 HOH A 48 448 162 HOH HOH . J 5 HOH A 49 449 23 HOH HOH . J 5 HOH A 50 450 191 HOH HOH . J 5 HOH A 51 451 93 HOH HOH . J 5 HOH A 52 452 118 HOH HOH . J 5 HOH A 53 453 249 HOH HOH . J 5 HOH A 54 454 206 HOH HOH . J 5 HOH A 55 455 3 HOH HOH . J 5 HOH A 56 456 308 HOH HOH . J 5 HOH A 57 457 144 HOH HOH . J 5 HOH A 58 458 6 HOH HOH . J 5 HOH A 59 459 159 HOH HOH . J 5 HOH A 60 460 85 HOH HOH . J 5 HOH A 61 461 97 HOH HOH . J 5 HOH A 62 462 94 HOH HOH . J 5 HOH A 63 463 16 HOH HOH . J 5 HOH A 64 464 165 HOH HOH . J 5 HOH A 65 465 12 HOH HOH . J 5 HOH A 66 466 55 HOH HOH . J 5 HOH A 67 467 213 HOH HOH . J 5 HOH A 68 468 105 HOH HOH . J 5 HOH A 69 469 140 HOH HOH . J 5 HOH A 70 470 107 HOH HOH . J 5 HOH A 71 471 236 HOH HOH . J 5 HOH A 72 472 243 HOH HOH . J 5 HOH A 73 473 116 HOH HOH . J 5 HOH A 74 474 125 HOH HOH . J 5 HOH A 75 475 70 HOH HOH . J 5 HOH A 76 476 67 HOH HOH . J 5 HOH A 77 477 2 HOH HOH . J 5 HOH A 78 478 60 HOH HOH . J 5 HOH A 79 479 227 HOH HOH . J 5 HOH A 80 480 260 HOH HOH . J 5 HOH A 81 481 121 HOH HOH . J 5 HOH A 82 482 31 HOH HOH . J 5 HOH A 83 483 18 HOH HOH . J 5 HOH A 84 484 103 HOH HOH . J 5 HOH A 85 485 51 HOH HOH . J 5 HOH A 86 486 172 HOH HOH . J 5 HOH A 87 487 46 HOH HOH . J 5 HOH A 88 488 209 HOH HOH . J 5 HOH A 89 489 182 HOH HOH . J 5 HOH A 90 490 76 HOH HOH . J 5 HOH A 91 491 42 HOH HOH . J 5 HOH A 92 492 53 HOH HOH . J 5 HOH A 93 493 309 HOH HOH . J 5 HOH A 94 494 30 HOH HOH . J 5 HOH A 95 495 99 HOH HOH . J 5 HOH A 96 496 190 HOH HOH . J 5 HOH A 97 497 45 HOH HOH . J 5 HOH A 98 498 35 HOH HOH . J 5 HOH A 99 499 319 HOH HOH . J 5 HOH A 100 500 228 HOH HOH . J 5 HOH A 101 501 177 HOH HOH . J 5 HOH A 102 502 234 HOH HOH . J 5 HOH A 103 503 14 HOH HOH . J 5 HOH A 104 504 231 HOH HOH . J 5 HOH A 105 505 337 HOH HOH . J 5 HOH A 106 506 153 HOH HOH . J 5 HOH A 107 507 123 HOH HOH . J 5 HOH A 108 508 338 HOH HOH . J 5 HOH A 109 509 52 HOH HOH . J 5 HOH A 110 510 63 HOH HOH . J 5 HOH A 111 511 40 HOH HOH . J 5 HOH A 112 512 210 HOH HOH . J 5 HOH A 113 513 128 HOH HOH . J 5 HOH A 114 514 50 HOH HOH . J 5 HOH A 115 515 11 HOH HOH . J 5 HOH A 116 516 13 HOH HOH . J 5 HOH A 117 517 124 HOH HOH . J 5 HOH A 118 518 24 HOH HOH . J 5 HOH A 119 519 335 HOH HOH . J 5 HOH A 120 520 241 HOH HOH . J 5 HOH A 121 521 100 HOH HOH . J 5 HOH A 122 522 28 HOH HOH . J 5 HOH A 123 523 15 HOH HOH . J 5 HOH A 124 524 1 HOH HOH . J 5 HOH A 125 525 166 HOH HOH . J 5 HOH A 126 526 157 HOH HOH . J 5 HOH A 127 527 104 HOH HOH . J 5 HOH A 128 528 79 HOH HOH . J 5 HOH A 129 529 34 HOH HOH . J 5 HOH A 130 530 127 HOH HOH . J 5 HOH A 131 531 68 HOH HOH . J 5 HOH A 132 532 132 HOH HOH . J 5 HOH A 133 533 47 HOH HOH . J 5 HOH A 134 534 142 HOH HOH . J 5 HOH A 135 535 225 HOH HOH . J 5 HOH A 136 536 199 HOH HOH . J 5 HOH A 137 537 106 HOH HOH . J 5 HOH A 138 538 81 HOH HOH . J 5 HOH A 139 539 208 HOH HOH . J 5 HOH A 140 540 133 HOH HOH . J 5 HOH A 141 541 80 HOH HOH . J 5 HOH A 142 542 95 HOH HOH . J 5 HOH A 143 543 138 HOH HOH . J 5 HOH A 144 544 59 HOH HOH . J 5 HOH A 145 545 307 HOH HOH . J 5 HOH A 146 546 321 HOH HOH . J 5 HOH A 147 547 10 HOH HOH . J 5 HOH A 148 548 176 HOH HOH . J 5 HOH A 149 549 91 HOH HOH . J 5 HOH A 150 550 179 HOH HOH . J 5 HOH A 151 551 74 HOH HOH . J 5 HOH A 152 552 333 HOH HOH . J 5 HOH A 153 553 5 HOH HOH . J 5 HOH A 154 554 33 HOH HOH . J 5 HOH A 155 555 9 HOH HOH . J 5 HOH A 156 556 130 HOH HOH . J 5 HOH A 157 557 115 HOH HOH . J 5 HOH A 158 558 247 HOH HOH . J 5 HOH A 159 559 48 HOH HOH . J 5 HOH A 160 560 96 HOH HOH . J 5 HOH A 161 561 32 HOH HOH . J 5 HOH A 162 562 19 HOH HOH . J 5 HOH A 163 563 113 HOH HOH . J 5 HOH A 164 564 108 HOH HOH . J 5 HOH A 165 565 37 HOH HOH . J 5 HOH A 166 566 69 HOH HOH . J 5 HOH A 167 567 143 HOH HOH . J 5 HOH A 168 568 145 HOH HOH . J 5 HOH A 169 569 109 HOH HOH . J 5 HOH A 170 570 137 HOH HOH . J 5 HOH A 171 571 164 HOH HOH . J 5 HOH A 172 572 26 HOH HOH . J 5 HOH A 173 573 27 HOH HOH . J 5 HOH A 174 574 202 HOH HOH . J 5 HOH A 175 575 92 HOH HOH . J 5 HOH A 176 576 152 HOH HOH . J 5 HOH A 177 577 180 HOH HOH . J 5 HOH A 178 578 82 HOH HOH . J 5 HOH A 179 579 232 HOH HOH . J 5 HOH A 180 580 43 HOH HOH . J 5 HOH A 181 581 161 HOH HOH . J 5 HOH A 182 582 8 HOH HOH . J 5 HOH A 183 583 88 HOH HOH . J 5 HOH A 184 584 36 HOH HOH . J 5 HOH A 185 585 330 HOH HOH . J 5 HOH A 186 586 201 HOH HOH . J 5 HOH A 187 587 87 HOH HOH . J 5 HOH A 188 588 44 HOH HOH . J 5 HOH A 189 589 212 HOH HOH . J 5 HOH A 190 590 86 HOH HOH . J 5 HOH A 191 591 193 HOH HOH . J 5 HOH A 192 592 141 HOH HOH . J 5 HOH A 193 593 219 HOH HOH . J 5 HOH A 194 594 194 HOH HOH . J 5 HOH A 195 595 62 HOH HOH . J 5 HOH A 196 596 114 HOH HOH . J 5 HOH A 197 597 173 HOH HOH . J 5 HOH A 198 598 65 HOH HOH . J 5 HOH A 199 599 264 HOH HOH . J 5 HOH A 200 600 89 HOH HOH . J 5 HOH A 201 601 268 HOH HOH . J 5 HOH A 202 602 122 HOH HOH . J 5 HOH A 203 603 61 HOH HOH . J 5 HOH A 204 604 256 HOH HOH . J 5 HOH A 205 605 129 HOH HOH . J 5 HOH A 206 606 207 HOH HOH . J 5 HOH A 207 607 150 HOH HOH . J 5 HOH A 208 608 313 HOH HOH . J 5 HOH A 209 609 38 HOH HOH . J 5 HOH A 210 610 197 HOH HOH . J 5 HOH A 211 611 325 HOH HOH . J 5 HOH A 212 612 160 HOH HOH . J 5 HOH A 213 613 327 HOH HOH . J 5 HOH A 214 614 98 HOH HOH . J 5 HOH A 215 615 299 HOH HOH . J 5 HOH A 216 616 112 HOH HOH . J 5 HOH A 217 617 211 HOH HOH . J 5 HOH A 218 618 90 HOH HOH . J 5 HOH A 219 619 111 HOH HOH . J 5 HOH A 220 620 250 HOH HOH . J 5 HOH A 221 621 84 HOH HOH . J 5 HOH A 222 622 258 HOH HOH . J 5 HOH A 223 623 169 HOH HOH . J 5 HOH A 224 624 135 HOH HOH . J 5 HOH A 225 625 223 HOH HOH . J 5 HOH A 226 626 148 HOH HOH . J 5 HOH A 227 627 262 HOH HOH . J 5 HOH A 228 628 189 HOH HOH . J 5 HOH A 229 629 214 HOH HOH . J 5 HOH A 230 630 146 HOH HOH . J 5 HOH A 231 631 75 HOH HOH . J 5 HOH A 232 632 167 HOH HOH . J 5 HOH A 233 633 218 HOH HOH . J 5 HOH A 234 634 185 HOH HOH . J 5 HOH A 235 635 183 HOH HOH . J 5 HOH A 236 636 102 HOH HOH . J 5 HOH A 237 637 205 HOH HOH . J 5 HOH A 238 638 336 HOH HOH . J 5 HOH A 239 639 126 HOH HOH . J 5 HOH A 240 640 198 HOH HOH . J 5 HOH A 241 641 240 HOH HOH . J 5 HOH A 242 642 154 HOH HOH . J 5 HOH A 243 643 156 HOH HOH . J 5 HOH A 244 644 274 HOH HOH . J 5 HOH A 245 645 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 9.375 -5.82 -2.421 1 22.94 ? C1 GOL 308 A 1 HETATM 2 O O1 GOL . . . I 4 9.557 -6.643 -3.568 1 16.66 ? O1 GOL 308 A 1 HETATM 3 C C2 GOL . . . I 4 10.741 -5.267 -2.047 1 23.72 ? C2 GOL 308 A 1 HETATM 4 O O2 GOL . . . I 4 10.776 -3.848 -2.112 1 24.14 ? O2 GOL 308 A 1 HETATM 5 C C3 GOL . . . I 4 11.086 -5.641 -0.633 1 25.13 ? C3 GOL 308 A 1 HETATM 6 O O3 GOL . . . I 4 11.354 -7.05 -0.49 1 26.02 ? O3 GOL 308 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #