data_5CHK
#
_model_server_result.job_id            c32t6oKU0ZkdL9XvU8QRlQ 
_model_server_result.datetime_utc      '2024-11-21 22:44:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5chk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5CHK 
#
_exptl.entry_id    5CHK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CHK 
_cell.length_a            61.31 
_cell.length_b            61.31 
_cell.length_c            120.53 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CHK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 40.176667 
4 'crystal symmetry operation' 10_555 -y,-x,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 40.176667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 266 n n 
C1 O1 NAG sing 267 n n 
C1 O5 NAG sing 268 n n 
C1 H1 NAG sing 269 n n 
C2 C3 NAG sing 270 n n 
C2 N2 NAG sing 271 n n 
C2 H2 NAG sing 272 n n 
C3 C4 NAG sing 273 n n 
C3 O3 NAG sing 274 n n 
C3 H3 NAG sing 275 n n 
C4 C5 NAG sing 276 n n 
C4 O4 NAG sing 277 n n 
C4 H4 NAG sing 278 n n 
C5 C6 NAG sing 279 n n 
C5 O5 NAG sing 280 n n 
C5 H5 NAG sing 281 n n 
C6 O6 NAG sing 282 n n 
C6 H61 NAG sing 283 n n 
C6 H62 NAG sing 284 n n 
C7 C8 NAG sing 285 n n 
C7 N2 NAG sing 286 n n 
C7 O7 NAG doub 287 n n 
C8 H81 NAG sing 288 n n 
C8 H82 NAG sing 289 n n 
C8 H83 NAG sing 290 n n 
N2 HN2 NAG sing 291 n n 
O1 HO1 NAG sing 292 n n 
O3 HO3 NAG sing 293 n n 
O4 HO4 NAG sing 294 n n 
O6 HO6 NAG sing 295 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5CHK 
_atom_sites.fract_transf_matrix[1][1]    0.016311 
_atom_sites.fract_transf_matrix[1][2]    0.009417 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 201 1 NAG NAG . 
C 3 55R A 1 202 1 55R ha9 . 
D 4 HOH A 1 301 109 HOH HOH . 
D 4 HOH A 2 302 164 HOH HOH . 
D 4 HOH A 3 303 25 HOH HOH . 
D 4 HOH A 4 304 98 HOH HOH . 
D 4 HOH A 5 305 206 HOH HOH . 
D 4 HOH A 6 306 5 HOH HOH . 
D 4 HOH A 7 307 183 HOH HOH . 
D 4 HOH A 8 308 14 HOH HOH . 
D 4 HOH A 9 309 7 HOH HOH . 
D 4 HOH A 10 310 6 HOH HOH . 
D 4 HOH A 11 311 134 HOH HOH . 
D 4 HOH A 12 312 41 HOH HOH . 
D 4 HOH A 13 313 155 HOH HOH . 
D 4 HOH A 14 314 12 HOH HOH . 
D 4 HOH A 15 315 68 HOH HOH . 
D 4 HOH A 16 316 1 HOH HOH . 
D 4 HOH A 17 317 18 HOH HOH . 
D 4 HOH A 18 318 149 HOH HOH . 
D 4 HOH A 19 319 130 HOH HOH . 
D 4 HOH A 20 320 56 HOH HOH . 
D 4 HOH A 21 321 8 HOH HOH . 
D 4 HOH A 22 322 3 HOH HOH . 
D 4 HOH A 23 323 163 HOH HOH . 
D 4 HOH A 24 324 10 HOH HOH . 
D 4 HOH A 25 325 16 HOH HOH . 
D 4 HOH A 26 326 4 HOH HOH . 
D 4 HOH A 27 327 9 HOH HOH . 
D 4 HOH A 28 328 26 HOH HOH . 
D 4 HOH A 29 329 213 HOH HOH . 
D 4 HOH A 30 330 211 HOH HOH . 
D 4 HOH A 31 331 99 HOH HOH . 
D 4 HOH A 32 332 103 HOH HOH . 
D 4 HOH A 33 333 21 HOH HOH . 
D 4 HOH A 34 334 111 HOH HOH . 
D 4 HOH A 35 335 52 HOH HOH . 
D 4 HOH A 36 336 207 HOH HOH . 
D 4 HOH A 37 337 11 HOH HOH . 
D 4 HOH A 38 338 100 HOH HOH . 
D 4 HOH A 39 339 201 HOH HOH . 
D 4 HOH A 40 340 204 HOH HOH . 
D 4 HOH A 41 341 193 HOH HOH . 
D 4 HOH A 42 342 212 HOH HOH . 
D 4 HOH A 43 343 104 HOH HOH . 
D 4 HOH A 44 344 118 HOH HOH . 
D 4 HOH A 45 345 114 HOH HOH . 
D 4 HOH A 46 346 210 HOH HOH . 
D 4 HOH A 47 347 147 HOH HOH . 
D 4 HOH A 48 348 209 HOH HOH . 
D 4 HOH A 49 349 186 HOH HOH . 
D 4 HOH A 50 350 208 HOH HOH . 
D 4 HOH A 51 351 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 23.329 9.635 30.451 1 84.51 ? C1 NAG 201 A 1 
HETATM 2 C C2 NAG . . . B 2 23.091 9.87 31.93 1 95.34 ? C2 NAG 201 A 1 
HETATM 3 C C3 NAG . . . B 2 23.062 11.37 32.243 1 104.36 ? C3 NAG 201 A 1 
HETATM 4 C C4 NAG . . . B 2 24.322 12.074 31.755 1 107.2 ? C4 NAG 201 A 1 
HETATM 5 C C5 NAG . . . B 2 24.587 11.686 30.286 1 107.51 ? C5 NAG 201 A 1 
HETATM 6 C C6 NAG . . . B 2 25.943 12.208 29.808 1 105.67 ? C6 NAG 201 A 1 
HETATM 7 C C7 NAG . . . B 2 21.692 8.149 32.982 1 82.61 ? C7 NAG 201 A 1 
HETATM 8 C C8 NAG . . . B 2 20.276 7.781 33.302 1 89.33 ? C8 NAG 201 A 1 
HETATM 9 N N2 NAG . . . B 2 21.818 9.295 32.325 1 87.39 ? N2 NAG 201 A 1 
HETATM 10 O O3 NAG . . . B 2 22.931 11.577 33.654 1 103.03 ? O3 NAG 201 A 1 
HETATM 11 O O4 NAG . . . B 2 24.174 13.496 31.968 1 106.75 ? O4 NAG 201 A 1 
HETATM 12 O O5 NAG . . . B 2 24.56 10.249 30.094 1 95.59 ? O5 NAG 201 A 1 
HETATM 13 O O6 NAG . . . B 2 26.984 11.315 30.229 1 109.53 ? O6 NAG 201 A 1 
HETATM 14 O O7 NAG . . . B 2 22.63 7.436 33.3 1 83.28 ? O7 NAG 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#