data_5CHK # _model_server_result.job_id EfKBxs0L0q36hjudRHpCdg _model_server_result.datetime_utc '2024-11-21 22:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5chk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5CHK # _exptl.entry_id 5CHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.23 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-[2-(4-oxocyclohexa-2,5-dien-1-ylidene)hydrazinyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CHK _cell.length_a 61.31 _cell.length_b 61.31 _cell.length_c 120.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 40.176667 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 40.176667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C13 H10 N2 O3' _chem_comp.formula_weight 242.23 _chem_comp.id 55R _chem_comp.mon_nstd_flag . _chem_comp.name '2-[2-(4-oxocyclohexa-2,5-dien-1-ylidene)hydrazinyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 55R doub 1 n y C8 C7 55R sing 2 n y C9 C4 55R sing 3 n y C7 C6 55R doub 4 n y C6 C5 55R sing 5 n y O1 C3 55R doub 6 n n C4 C5 55R doub 7 n y C4 C3 55R sing 8 n n C5 N8 55R sing 9 n n C3 O2 55R sing 10 n n N8 N9 55R sing 11 n n N9 C10 55R doub 12 n n C10 C11 55R sing 13 n n C10 C15 55R sing 14 n n C11 C12 55R doub 15 n n C15 C14 55R doub 16 n n C12 C13 55R sing 17 n n C14 C13 55R sing 18 n n C13 O16 55R doub 19 n n O2 H1 55R sing 20 n n C6 H2 55R sing 21 n n C7 H3 55R sing 22 n n C8 H4 55R sing 23 n n C9 H5 55R sing 24 n n C12 H6 55R sing 25 n n C11 H8 55R sing 26 n n C14 H9 55R sing 27 n n C15 H10 55R sing 28 n n N8 H7 55R sing 29 n n # _atom_sites.entry_id 5CHK _atom_sites.fract_transf_matrix[1][1] 0.016311 _atom_sites.fract_transf_matrix[1][2] 0.009417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 1 NAG NAG . C 3 55R A 1 202 1 55R ha9 . D 4 HOH A 1 301 109 HOH HOH . D 4 HOH A 2 302 164 HOH HOH . D 4 HOH A 3 303 25 HOH HOH . D 4 HOH A 4 304 98 HOH HOH . D 4 HOH A 5 305 206 HOH HOH . D 4 HOH A 6 306 5 HOH HOH . D 4 HOH A 7 307 183 HOH HOH . D 4 HOH A 8 308 14 HOH HOH . D 4 HOH A 9 309 7 HOH HOH . D 4 HOH A 10 310 6 HOH HOH . D 4 HOH A 11 311 134 HOH HOH . D 4 HOH A 12 312 41 HOH HOH . D 4 HOH A 13 313 155 HOH HOH . D 4 HOH A 14 314 12 HOH HOH . D 4 HOH A 15 315 68 HOH HOH . D 4 HOH A 16 316 1 HOH HOH . D 4 HOH A 17 317 18 HOH HOH . D 4 HOH A 18 318 149 HOH HOH . D 4 HOH A 19 319 130 HOH HOH . D 4 HOH A 20 320 56 HOH HOH . D 4 HOH A 21 321 8 HOH HOH . D 4 HOH A 22 322 3 HOH HOH . D 4 HOH A 23 323 163 HOH HOH . D 4 HOH A 24 324 10 HOH HOH . D 4 HOH A 25 325 16 HOH HOH . D 4 HOH A 26 326 4 HOH HOH . D 4 HOH A 27 327 9 HOH HOH . D 4 HOH A 28 328 26 HOH HOH . D 4 HOH A 29 329 213 HOH HOH . D 4 HOH A 30 330 211 HOH HOH . D 4 HOH A 31 331 99 HOH HOH . D 4 HOH A 32 332 103 HOH HOH . D 4 HOH A 33 333 21 HOH HOH . D 4 HOH A 34 334 111 HOH HOH . D 4 HOH A 35 335 52 HOH HOH . D 4 HOH A 36 336 207 HOH HOH . D 4 HOH A 37 337 11 HOH HOH . D 4 HOH A 38 338 100 HOH HOH . D 4 HOH A 39 339 201 HOH HOH . D 4 HOH A 40 340 204 HOH HOH . D 4 HOH A 41 341 193 HOH HOH . D 4 HOH A 42 342 212 HOH HOH . D 4 HOH A 43 343 104 HOH HOH . D 4 HOH A 44 344 118 HOH HOH . D 4 HOH A 45 345 114 HOH HOH . D 4 HOH A 46 346 210 HOH HOH . D 4 HOH A 47 347 147 HOH HOH . D 4 HOH A 48 348 209 HOH HOH . D 4 HOH A 49 349 186 HOH HOH . D 4 HOH A 50 350 208 HOH HOH . D 4 HOH A 51 351 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 55R . . . C 3 13.935 4.484 28.708 1 53.45 ? O1 55R 202 A 1 HETATM 2 O O2 55R . . . C 3 13.649 3.24 30.474 1 62.48 ? O2 55R 202 A 1 HETATM 3 C C3 55R . . . C 3 13.299 3.602 29.33 1 53.9 ? C3 55R 202 A 1 HETATM 4 C C4 55R . . . C 3 12.075 2.98 28.712 1 51.56 ? C4 55R 202 A 1 HETATM 5 C C5 55R . . . C 3 11.359 1.938 29.309 1 51.87 ? C5 55R 202 A 1 HETATM 6 C C6 55R . . . C 3 10.237 1.404 28.689 1 50.53 ? C6 55R 202 A 1 HETATM 7 C C7 55R . . . C 3 9.83 1.907 27.47 1 48.94 ? C7 55R 202 A 1 HETATM 8 C C8 55R . . . C 3 10.548 2.925 26.863 1 51.71 ? C8 55R 202 A 1 HETATM 9 C C9 55R . . . C 3 11.657 3.472 27.486 1 50.14 ? C9 55R 202 A 1 HETATM 10 O O16 55R . . . C 3 12.017 -1.68 36.01 1 82.67 ? O16 55R 202 A 1 HETATM 11 C C13 55R . . . C 3 11.803 -1.168 34.882 1 74.35 ? C13 55R 202 A 1 HETATM 12 C C12 55R . . . C 3 10.609 -1.56 34.119 1 71.23 ? C12 55R 202 A 1 HETATM 13 C C11 55R . . . C 3 10.365 -0.992 32.897 1 66.69 ? C11 55R 202 A 1 HETATM 14 C C14 55R . . . C 3 12.722 -0.161 34.323 1 69 ? C14 55R 202 A 1 HETATM 15 C C15 55R . . . C 3 12.468 0.414 33.102 1 66.35 ? C15 55R 202 A 1 HETATM 16 C C10 55R . . . C 3 11.278 0.013 32.327 1 63.86 ? C10 55R 202 A 1 HETATM 17 N N9 55R . . . C 3 10.969 0.498 31.146 1 51.74 ? N9 55R 202 A 1 HETATM 18 N N8 55R . . . C 3 11.733 1.415 30.55 1 52.68 ? N8 55R 202 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #