data_5CI1 # _model_server_result.job_id dvj9LXDDSKVBfyPGk7aK9Q _model_server_result.datetime_utc '2024-12-18 11:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ci1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5CI1 # _exptl.entry_id 5CI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.689 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MU-OXO-DIIRON _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CI1 _cell.length_a 90.589 _cell.length_b 90.589 _cell.length_c 209.468 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 121 A SER 121 1_555 A N FY2 122 A FY2 122 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SER 121 A SER 121 1_555 A N FY2 122 A FY2 122 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C FY2 122 A FY2 122 1_555 A N THR 123 A THR 123 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C FY2 122 A FY2 122 1_555 A N THR 123 A THR 123 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OD2 ASP 84 A ASP 84 1_555 B FE2 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc2 A OE1 GLU 115 A GLU 115 1_555 B FE2 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A OE2 GLU 115 A GLU 115 1_555 B FE1 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 B FE2 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 A OE1 GLU 204 A GLU 204 1_555 B FE1 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 A OE1 GLU 238 A GLU 238 1_555 B FE1 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc7 A ND1 HIS 241 A HIS 241 1_555 B FE1 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 B FE1 FEO . A FEO 401 1_555 I O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 B FE2 FEO . A FEO 401 1_555 I O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'Fe2 O' _chem_comp.formula_weight 127.689 _chem_comp.id FEO _chem_comp.mon_nstd_flag . _chem_comp.name MU-OXO-DIIRON _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 O FEO sing 83 n n FE2 O FEO sing 84 n n # _atom_sites.entry_id 5CI1 _atom_sites.fract_transf_matrix[1][1] 0.011039 _atom_sites.fract_transf_matrix[1][2] 0.006373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FEO A 1 401 1 FEO FEO . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 2 SO4 SO4 . E 3 SO4 A 1 404 3 SO4 SO4 . F 3 SO4 A 1 405 4 SO4 SO4 . G 4 CL A 1 406 1 CL CL . H 4 CL A 1 407 1 CL CL . I 5 HOH A 1 501 125 HOH HOH . I 5 HOH A 2 502 46 HOH HOH . I 5 HOH A 3 503 4 HOH HOH . I 5 HOH A 4 504 36 HOH HOH . I 5 HOH A 5 505 193 HOH HOH . I 5 HOH A 6 506 202 HOH HOH . I 5 HOH A 7 507 44 HOH HOH . I 5 HOH A 8 508 150 HOH HOH . I 5 HOH A 9 509 113 HOH HOH . I 5 HOH A 10 510 130 HOH HOH . I 5 HOH A 11 511 23 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 203 HOH HOH . I 5 HOH A 14 514 81 HOH HOH . I 5 HOH A 15 515 159 HOH HOH . I 5 HOH A 16 516 6 HOH HOH . I 5 HOH A 17 517 38 HOH HOH . I 5 HOH A 18 518 118 HOH HOH . I 5 HOH A 19 519 95 HOH HOH . I 5 HOH A 20 520 100 HOH HOH . I 5 HOH A 21 521 227 HOH HOH . I 5 HOH A 22 522 2 HOH HOH . I 5 HOH A 23 523 147 HOH HOH . I 5 HOH A 24 524 87 HOH HOH . I 5 HOH A 25 525 5 HOH HOH . I 5 HOH A 26 526 7 HOH HOH . I 5 HOH A 27 527 85 HOH HOH . I 5 HOH A 28 528 211 HOH HOH . I 5 HOH A 29 529 34 HOH HOH . I 5 HOH A 30 530 116 HOH HOH . I 5 HOH A 31 531 69 HOH HOH . I 5 HOH A 32 532 137 HOH HOH . I 5 HOH A 33 533 171 HOH HOH . I 5 HOH A 34 534 12 HOH HOH . I 5 HOH A 35 535 30 HOH HOH . I 5 HOH A 36 536 78 HOH HOH . I 5 HOH A 37 537 213 HOH HOH . I 5 HOH A 38 538 225 HOH HOH . I 5 HOH A 39 539 164 HOH HOH . I 5 HOH A 40 540 174 HOH HOH . I 5 HOH A 41 541 160 HOH HOH . I 5 HOH A 42 542 133 HOH HOH . I 5 HOH A 43 543 180 HOH HOH . I 5 HOH A 44 544 162 HOH HOH . I 5 HOH A 45 545 1 HOH HOH . I 5 HOH A 46 546 60 HOH HOH . I 5 HOH A 47 547 50 HOH HOH . I 5 HOH A 48 548 86 HOH HOH . I 5 HOH A 49 549 71 HOH HOH . I 5 HOH A 50 550 161 HOH HOH . I 5 HOH A 51 551 144 HOH HOH . I 5 HOH A 52 552 219 HOH HOH . I 5 HOH A 53 553 172 HOH HOH . I 5 HOH A 54 554 9 HOH HOH . I 5 HOH A 55 555 181 HOH HOH . I 5 HOH A 56 556 205 HOH HOH . I 5 HOH A 57 557 170 HOH HOH . I 5 HOH A 58 558 96 HOH HOH . I 5 HOH A 59 559 66 HOH HOH . I 5 HOH A 60 560 53 HOH HOH . I 5 HOH A 61 561 93 HOH HOH . I 5 HOH A 62 562 167 HOH HOH . I 5 HOH A 63 563 104 HOH HOH . I 5 HOH A 64 564 22 HOH HOH . I 5 HOH A 65 565 52 HOH HOH . I 5 HOH A 66 566 55 HOH HOH . I 5 HOH A 67 567 83 HOH HOH . I 5 HOH A 68 568 123 HOH HOH . I 5 HOH A 69 569 43 HOH HOH . I 5 HOH A 70 570 153 HOH HOH . I 5 HOH A 71 571 42 HOH HOH . I 5 HOH A 72 572 145 HOH HOH . I 5 HOH A 73 573 89 HOH HOH . I 5 HOH A 74 574 48 HOH HOH . I 5 HOH A 75 575 45 HOH HOH . I 5 HOH A 76 576 114 HOH HOH . I 5 HOH A 77 577 59 HOH HOH . I 5 HOH A 78 578 129 HOH HOH . I 5 HOH A 79 579 49 HOH HOH . I 5 HOH A 80 580 176 HOH HOH . I 5 HOH A 81 581 88 HOH HOH . I 5 HOH A 82 582 56 HOH HOH . I 5 HOH A 83 583 98 HOH HOH . I 5 HOH A 84 584 136 HOH HOH . I 5 HOH A 85 585 63 HOH HOH . I 5 HOH A 86 586 200 HOH HOH . I 5 HOH A 87 587 149 HOH HOH . I 5 HOH A 88 588 121 HOH HOH . I 5 HOH A 89 589 175 HOH HOH . I 5 HOH A 90 590 112 HOH HOH . I 5 HOH A 91 591 39 HOH HOH . I 5 HOH A 92 592 158 HOH HOH . I 5 HOH A 93 593 33 HOH HOH . I 5 HOH A 94 594 29 HOH HOH . I 5 HOH A 95 595 94 HOH HOH . I 5 HOH A 96 596 216 HOH HOH . I 5 HOH A 97 597 37 HOH HOH . I 5 HOH A 98 598 64 HOH HOH . I 5 HOH A 99 599 40 HOH HOH . I 5 HOH A 100 600 91 HOH HOH . I 5 HOH A 101 601 138 HOH HOH . I 5 HOH A 102 602 67 HOH HOH . I 5 HOH A 103 603 31 HOH HOH . I 5 HOH A 104 604 105 HOH HOH . I 5 HOH A 105 605 20 HOH HOH . I 5 HOH A 106 606 134 HOH HOH . I 5 HOH A 107 607 103 HOH HOH . I 5 HOH A 108 608 177 HOH HOH . I 5 HOH A 109 609 135 HOH HOH . I 5 HOH A 110 610 41 HOH HOH . I 5 HOH A 111 611 61 HOH HOH . I 5 HOH A 112 612 165 HOH HOH . I 5 HOH A 113 613 18 HOH HOH . I 5 HOH A 114 614 208 HOH HOH . I 5 HOH A 115 615 99 HOH HOH . I 5 HOH A 116 616 8 HOH HOH . I 5 HOH A 117 617 207 HOH HOH . I 5 HOH A 118 618 229 HOH HOH . I 5 HOH A 119 619 152 HOH HOH . I 5 HOH A 120 620 58 HOH HOH . I 5 HOH A 121 621 57 HOH HOH . I 5 HOH A 122 622 120 HOH HOH . I 5 HOH A 123 623 109 HOH HOH . I 5 HOH A 124 624 90 HOH HOH . I 5 HOH A 125 625 122 HOH HOH . I 5 HOH A 126 626 119 HOH HOH . I 5 HOH A 127 627 132 HOH HOH . I 5 HOH A 128 628 223 HOH HOH . I 5 HOH A 129 629 191 HOH HOH . I 5 HOH A 130 630 226 HOH HOH . I 5 HOH A 131 631 173 HOH HOH . I 5 HOH A 132 632 92 HOH HOH . I 5 HOH A 133 633 74 HOH HOH . I 5 HOH A 134 634 224 HOH HOH . I 5 HOH A 135 635 35 HOH HOH . I 5 HOH A 136 636 189 HOH HOH . I 5 HOH A 137 637 62 HOH HOH . I 5 HOH A 138 638 142 HOH HOH . I 5 HOH A 139 639 47 HOH HOH . I 5 HOH A 140 640 73 HOH HOH . I 5 HOH A 141 641 230 HOH HOH . I 5 HOH A 142 642 140 HOH HOH . I 5 HOH A 143 643 65 HOH HOH . I 5 HOH A 144 644 80 HOH HOH . I 5 HOH A 145 645 84 HOH HOH . I 5 HOH A 146 646 28 HOH HOH . I 5 HOH A 147 647 75 HOH HOH . I 5 HOH A 148 648 70 HOH HOH . I 5 HOH A 149 649 131 HOH HOH . I 5 HOH A 150 650 10 HOH HOH . I 5 HOH A 151 651 178 HOH HOH . I 5 HOH A 152 652 54 HOH HOH . I 5 HOH A 153 653 190 HOH HOH . I 5 HOH A 154 654 217 HOH HOH . I 5 HOH A 155 655 108 HOH HOH . I 5 HOH A 156 656 117 HOH HOH . I 5 HOH A 157 657 196 HOH HOH . I 5 HOH A 158 658 148 HOH HOH . I 5 HOH A 159 659 220 HOH HOH . I 5 HOH A 160 660 106 HOH HOH . I 5 HOH A 161 661 128 HOH HOH . I 5 HOH A 162 662 228 HOH HOH . I 5 HOH A 163 663 185 HOH HOH . I 5 HOH A 164 664 79 HOH HOH . I 5 HOH A 165 665 214 HOH HOH . I 5 HOH A 166 666 195 HOH HOH . I 5 HOH A 167 667 182 HOH HOH . I 5 HOH A 168 668 212 HOH HOH . I 5 HOH A 169 669 204 HOH HOH . I 5 HOH A 170 670 166 HOH HOH . I 5 HOH A 171 671 157 HOH HOH . I 5 HOH A 172 672 231 HOH HOH . I 5 HOH A 173 673 143 HOH HOH . I 5 HOH A 174 674 25 HOH HOH . I 5 HOH A 175 675 24 HOH HOH . I 5 HOH A 176 676 76 HOH HOH . I 5 HOH A 177 677 206 HOH HOH . I 5 HOH A 178 678 110 HOH HOH . I 5 HOH A 179 679 198 HOH HOH . I 5 HOH A 180 680 221 HOH HOH . I 5 HOH A 181 681 199 HOH HOH . I 5 HOH A 182 682 124 HOH HOH . I 5 HOH A 183 683 179 HOH HOH . I 5 HOH A 184 684 169 HOH HOH . I 5 HOH A 185 685 184 HOH HOH . I 5 HOH A 186 686 192 HOH HOH . I 5 HOH A 187 687 151 HOH HOH . I 5 HOH A 188 688 186 HOH HOH . I 5 HOH A 189 689 126 HOH HOH . I 5 HOH A 190 690 146 HOH HOH . I 5 HOH A 191 691 215 HOH HOH . I 5 HOH A 192 692 183 HOH HOH . I 5 HOH A 193 693 209 HOH HOH . I 5 HOH A 194 694 141 HOH HOH . I 5 HOH A 195 695 187 HOH HOH . I 5 HOH A 196 696 163 HOH HOH . I 5 HOH A 197 697 139 HOH HOH . I 5 HOH A 198 698 107 HOH HOH . I 5 HOH A 199 699 222 HOH HOH . I 5 HOH A 200 700 201 HOH HOH . I 5 HOH A 201 701 155 HOH HOH . I 5 HOH A 202 702 127 HOH HOH . I 5 HOH A 203 703 154 HOH HOH . I 5 HOH A 204 704 194 HOH HOH . I 5 HOH A 205 705 218 HOH HOH . I 5 HOH A 206 706 188 HOH HOH . I 5 HOH A 207 707 197 HOH HOH . I 5 HOH A 208 708 168 HOH HOH . I 5 HOH A 209 709 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FEO . . . B 2 -25.944 -29.07 -6.808 1 29.78 ? FE1 FEO 401 A 1 HETATM 2 FE FE2 FEO . . . B 2 -26.037 -26.499 -8.844 1 29.69 ? FE2 FEO 401 A 1 HETATM 3 O O FEO . . . B 2 -26.865 -27.485 -7.46 1 23.41 ? O FEO 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #