data_5CIB
#
_model_server_result.job_id            A0UuIXUyhH7FPcHPBH5_zg 
_model_server_result.datetime_utc      '2024-11-06 02:53:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    5CIB 
#
_exptl.entry_id    5CIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.49 
_cell.angle_gamma         90 
_cell.entry_id            5CIB 
_cell.length_a            45.371 
_cell.length_b            107.461 
_cell.length_c            87.217 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 19 B CYS 14 1_555 G CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 sing 
covale ? covale2 B SG CYS 22 B CYS 17 1_555 G CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 sing 
covale ? covale3 D SG CYS 19 D CYS 14 1_555 J CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 sing 
covale ? covale4 D SG CYS 22 D CYS 17 1_555 J CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 H FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 D SD MET 85 D MET 80 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 149 n n 
FE NB HEC sing 150 n n 
FE NC HEC sing 151 n n 
FE ND HEC sing 152 n n 
CHA C1A HEC doub 153 n n 
CHA C4D HEC sing 154 n n 
CHA HHA HEC sing 155 n n 
CHB C4A HEC doub 156 n n 
CHB C1B HEC sing 157 n n 
CHB HHB HEC sing 158 n n 
CHC C4B HEC doub 159 n n 
CHC C1C HEC sing 160 n n 
CHC HHC HEC sing 161 n n 
CHD C4C HEC doub 162 n n 
CHD C1D HEC sing 163 n n 
CHD HHD HEC sing 164 n n 
NA C1A HEC sing 165 n y 
NA C4A HEC sing 166 n y 
C1A C2A HEC sing 167 n y 
C2A C3A HEC doub 168 n y 
C2A CAA HEC sing 169 n n 
C3A C4A HEC sing 170 n y 
C3A CMA HEC sing 171 n n 
CMA HMA1 HEC sing 172 n n 
CMA HMA2 HEC sing 173 n n 
CMA HMA3 HEC sing 174 n n 
CAA CBA HEC sing 175 n n 
CAA HAA1 HEC sing 176 n n 
CAA HAA2 HEC sing 177 n n 
CBA CGA HEC sing 178 n n 
CBA HBA1 HEC sing 179 n n 
CBA HBA2 HEC sing 180 n n 
CGA O1A HEC doub 181 n n 
CGA O2A HEC sing 182 n n 
O2A H2A HEC sing 183 n n 
NB C1B HEC sing 184 n y 
NB C4B HEC sing 185 n y 
C1B C2B HEC doub 186 n y 
C2B C3B HEC sing 187 n y 
C2B CMB HEC sing 188 n n 
C3B C4B HEC sing 189 n y 
C3B CAB HEC doub 190 e n 
CMB HMB1 HEC sing 191 n n 
CMB HMB2 HEC sing 192 n n 
CMB HMB3 HEC sing 193 n n 
CAB CBB HEC sing 194 n n 
CAB HAB HEC sing 195 n n 
CBB HBB1 HEC sing 196 n n 
CBB HBB2 HEC sing 197 n n 
CBB HBB3 HEC sing 198 n n 
NC C1C HEC sing 199 n y 
NC C4C HEC sing 200 n y 
C1C C2C HEC doub 201 n y 
C2C C3C HEC sing 202 n y 
C2C CMC HEC sing 203 n n 
C3C C4C HEC sing 204 n y 
C3C CAC HEC doub 205 e n 
CMC HMC1 HEC sing 206 n n 
CMC HMC2 HEC sing 207 n n 
CMC HMC3 HEC sing 208 n n 
CAC CBC HEC sing 209 n n 
CAC HAC HEC sing 210 n n 
CBC HBC1 HEC sing 211 n n 
CBC HBC2 HEC sing 212 n n 
CBC HBC3 HEC sing 213 n n 
ND C1D HEC sing 214 n y 
ND C4D HEC sing 215 n y 
C1D C2D HEC doub 216 n y 
C2D C3D HEC sing 217 n y 
C2D CMD HEC sing 218 n n 
C3D C4D HEC doub 219 n y 
C3D CAD HEC sing 220 n n 
CMD HMD1 HEC sing 221 n n 
CMD HMD2 HEC sing 222 n n 
CMD HMD3 HEC sing 223 n n 
CAD CBD HEC sing 224 n n 
CAD HAD1 HEC sing 225 n n 
CAD HAD2 HEC sing 226 n n 
CBD CGD HEC sing 227 n n 
CBD HBD1 HEC sing 228 n n 
CBD HBD2 HEC sing 229 n n 
CGD O1D HEC doub 230 n n 
CGD O2D HEC sing 231 n n 
O2D H2D HEC sing 232 n n 
#
_atom_sites.entry_id                     5CIB 
_atom_sites.fract_transf_matrix[1][1]    0.022041 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005694 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEC A 1 301 296 HEC HEM . 
F 4 51S A 1 302 901 51S DMA . 
G 3 HEC B 1 201 104 HEC HEM . 
H 3 HEC C 1 301 296 HEC HEM . 
I 4 51S C 1 302 901 51S DMA . 
J 3 HEC D 1 201 104 HEC HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . J 3 -27.217 -1.721 -37.248 1 146.42 ? FE HEC 201 D 1 
HETATM 2 C CHA HEC . . . J 3 -26.588 -5.079 -36.938 1 117.01 ? CHA HEC 201 D 1 
HETATM 3 C CHB HEC . . . J 3 -28.826 -1.757 -34.184 1 118.89 ? CHB HEC 201 D 1 
HETATM 4 C CHC HEC . . . J 3 -28.032 1.65 -37.537 1 117.01 ? CHC HEC 201 D 1 
HETATM 5 C CHD HEC . . . J 3 -26.373 -1.756 -40.536 1 109.1 ? CHD HEC 201 D 1 
HETATM 6 N NA HEC . . . J 3 -27.672 -3.165 -35.847 1 118.11 ? NA HEC 201 D 1 
HETATM 7 C C1A HEC . . . J 3 -27.231 -4.477 -35.873 1 113.83 ? C1A HEC 201 D 1 
HETATM 8 C C2A HEC . . . J 3 -27.562 -5.081 -34.592 1 117.41 ? C2A HEC 201 D 1 
HETATM 9 C C3A HEC . . . J 3 -28.177 -4.158 -33.847 1 120.9 ? C3A HEC 201 D 1 
HETATM 10 C C4A HEC . . . J 3 -28.261 -2.936 -34.616 1 114.11 ? C4A HEC 201 D 1 
HETATM 11 C CMA HEC . . . J 3 -28.713 -4.345 -32.412 1 109.62 ? CMA HEC 201 D 1 
HETATM 12 C CAA HEC . . . J 3 -27.273 -6.529 -34.132 1 121.24 ? CAA HEC 201 D 1 
HETATM 13 C CBA HEC . . . J 3 -28.01 -7.551 -34.986 1 117.57 ? CBA HEC 201 D 1 
HETATM 14 C CGA HEC . . . J 3 -27.944 -8.891 -34.301 1 118.71 ? CGA HEC 201 D 1 
HETATM 15 O O1A HEC . . . J 3 -28.469 -9.883 -34.871 1 120.64 ? O1A HEC 201 D 1 
HETATM 16 O O2A HEC . . . J 3 -27.367 -8.968 -33.184 1 115.57 ? O2A HEC 201 D 1 
HETATM 17 N NB HEC . . . J 3 -28.263 -0.329 -36.092 1 116.37 ? NB HEC 201 D 1 
HETATM 18 C C1B HEC . . . J 3 -28.785 -0.548 -34.837 1 120.83 ? C1B HEC 201 D 1 
HETATM 19 C C2B HEC . . . J 3 -29.282 0.716 -34.319 1 124.25 ? C2B HEC 201 D 1 
HETATM 20 C C3B HEC . . . J 3 -29.077 1.657 -35.253 1 124.99 ? C3B HEC 201 D 1 
HETATM 21 C C4B HEC . . . J 3 -28.424 1.021 -36.373 1 118.82 ? C4B HEC 201 D 1 
HETATM 22 C CMB HEC . . . J 3 -29.949 0.857 -32.928 1 110.42 ? CMB HEC 201 D 1 
HETATM 23 C CAB HEC . . . J 3 -29.384 3.171 -35.244 1 115.56 ? CAB HEC 201 D 1 
HETATM 24 C CBB HEC . . . J 3 -29.617 3.893 -34.134 1 108.39 ? CBB HEC 201 D 1 
HETATM 25 N NC HEC . . . J 3 -27.203 -0.302 -38.744 1 121.8 ? NC HEC 201 D 1 
HETATM 26 C C1C HEC . . . J 3 -27.579 1.013 -38.662 1 122.42 ? C1C HEC 201 D 1 
HETATM 27 C C2C HEC . . . J 3 -27.415 1.619 -39.966 1 116.71 ? C2C HEC 201 D 1 
HETATM 28 C C3C HEC . . . J 3 -26.956 0.675 -40.811 1 113.67 ? C3C HEC 201 D 1 
HETATM 29 C C4C HEC . . . J 3 -26.813 -0.546 -40.046 1 114.32 ? C4C HEC 201 D 1 
HETATM 30 C CMC HEC . . . J 3 -27.749 3.106 -40.255 1 105.53 ? CMC HEC 201 D 1 
HETATM 31 C CAC HEC . . . J 3 -26.598 0.77 -42.316 1 114.64 ? CAC HEC 201 D 1 
HETATM 32 C CBC HEC . . . J 3 -26.573 1.9 -43.026 1 104.39 ? CBC HEC 201 D 1 
HETATM 33 N ND HEC . . . J 3 -26.659 -3.221 -38.562 1 111.57 ? ND HEC 201 D 1 
HETATM 34 C C1D HEC . . . J 3 -26.177 -2.922 -39.829 1 111.29 ? C1D HEC 201 D 1 
HETATM 35 C C2D HEC . . . J 3 -25.408 -4.041 -40.319 1 111.38 ? C2D HEC 201 D 1 
HETATM 36 C C3D HEC . . . J 3 -25.469 -5.102 -39.191 1 112.67 ? C3D HEC 201 D 1 
HETATM 37 C C4D HEC . . . J 3 -26.269 -4.493 -38.149 1 113.77 ? C4D HEC 201 D 1 
HETATM 38 C CMD HEC . . . J 3 -24.711 -4.065 -41.703 1 102.99 ? CMD HEC 201 D 1 
HETATM 39 C CAD HEC . . . J 3 -24.85 -6.519 -39.071 1 105.31 ? CAD HEC 201 D 1 
HETATM 40 C CBD HEC . . . J 3 -24.147 -7.026 -40.323 1 111.03 ? CBD HEC 201 D 1 
HETATM 41 C CGD HEC . . . J 3 -22.742 -7.44 -39.979 1 116.88 ? CGD HEC 201 D 1 
HETATM 42 O O1D HEC . . . J 3 -22.122 -8.18 -40.785 1 106.56 ? O1D HEC 201 D 1 
HETATM 43 O O2D HEC . . . J 3 -22.247 -7.036 -38.896 1 120.75 ? O2D HEC 201 D 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#