data_5CID
#
_model_server_result.job_id            b60gFo2g7hIaid2DIt2nPg 
_model_server_result.datetime_utc      '2024-11-27 23:06:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    5CID 
#
_exptl.entry_id    5CID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.33 
_cell.angle_gamma         90 
_cell.entry_id            5CID 
_cell.length_a            45.38 
_cell.length_b            111.906 
_cell.length_c            87.894 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 19 B CYS 14 1_555 G CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
covale ? covale2 B SG CYS 22 B CYS 17 1_555 G CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
covale ? covale3 D SG CYS 19 D CYS 14 1_555 J CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
covale ? covale4 D SG CYS 22 D CYS 17 1_555 J CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 H FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc6 D SD MET 85 D MET 80 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 146 n n 
FE NB HEC sing 147 n n 
FE NC HEC sing 148 n n 
FE ND HEC sing 149 n n 
CHA C1A HEC doub 150 n n 
CHA C4D HEC sing 151 n n 
CHA HHA HEC sing 152 n n 
CHB C4A HEC doub 153 n n 
CHB C1B HEC sing 154 n n 
CHB HHB HEC sing 155 n n 
CHC C4B HEC doub 156 n n 
CHC C1C HEC sing 157 n n 
CHC HHC HEC sing 158 n n 
CHD C4C HEC doub 159 n n 
CHD C1D HEC sing 160 n n 
CHD HHD HEC sing 161 n n 
NA C1A HEC sing 162 n y 
NA C4A HEC sing 163 n y 
C1A C2A HEC sing 164 n y 
C2A C3A HEC doub 165 n y 
C2A CAA HEC sing 166 n n 
C3A C4A HEC sing 167 n y 
C3A CMA HEC sing 168 n n 
CMA HMA1 HEC sing 169 n n 
CMA HMA2 HEC sing 170 n n 
CMA HMA3 HEC sing 171 n n 
CAA CBA HEC sing 172 n n 
CAA HAA1 HEC sing 173 n n 
CAA HAA2 HEC sing 174 n n 
CBA CGA HEC sing 175 n n 
CBA HBA1 HEC sing 176 n n 
CBA HBA2 HEC sing 177 n n 
CGA O1A HEC doub 178 n n 
CGA O2A HEC sing 179 n n 
O2A H2A HEC sing 180 n n 
NB C1B HEC sing 181 n y 
NB C4B HEC sing 182 n y 
C1B C2B HEC doub 183 n y 
C2B C3B HEC sing 184 n y 
C2B CMB HEC sing 185 n n 
C3B C4B HEC sing 186 n y 
C3B CAB HEC doub 187 e n 
CMB HMB1 HEC sing 188 n n 
CMB HMB2 HEC sing 189 n n 
CMB HMB3 HEC sing 190 n n 
CAB CBB HEC sing 191 n n 
CAB HAB HEC sing 192 n n 
CBB HBB1 HEC sing 193 n n 
CBB HBB2 HEC sing 194 n n 
CBB HBB3 HEC sing 195 n n 
NC C1C HEC sing 196 n y 
NC C4C HEC sing 197 n y 
C1C C2C HEC doub 198 n y 
C2C C3C HEC sing 199 n y 
C2C CMC HEC sing 200 n n 
C3C C4C HEC sing 201 n y 
C3C CAC HEC doub 202 e n 
CMC HMC1 HEC sing 203 n n 
CMC HMC2 HEC sing 204 n n 
CMC HMC3 HEC sing 205 n n 
CAC CBC HEC sing 206 n n 
CAC HAC HEC sing 207 n n 
CBC HBC1 HEC sing 208 n n 
CBC HBC2 HEC sing 209 n n 
CBC HBC3 HEC sing 210 n n 
ND C1D HEC sing 211 n y 
ND C4D HEC sing 212 n y 
C1D C2D HEC doub 213 n y 
C2D C3D HEC sing 214 n y 
C2D CMD HEC sing 215 n n 
C3D C4D HEC doub 216 n y 
C3D CAD HEC sing 217 n n 
CMD HMD1 HEC sing 218 n n 
CMD HMD2 HEC sing 219 n n 
CMD HMD3 HEC sing 220 n n 
CAD CBD HEC sing 221 n n 
CAD HAD1 HEC sing 222 n n 
CAD HAD2 HEC sing 223 n n 
CBD CGD HEC sing 224 n n 
CBD HBD1 HEC sing 225 n n 
CBD HBD2 HEC sing 226 n n 
CGD O1D HEC doub 227 n n 
CGD O2D HEC sing 228 n n 
O2D H2D HEC sing 229 n n 
#
_atom_sites.entry_id                     5CID 
_atom_sites.fract_transf_matrix[1][1]    0.022036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005629 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011743 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEC A 1 301 296 HEC HEM . 
F 4 51V A 1 302 901 51V TOL . 
G 3 HEC B 1 201 104 HEC HEM . 
H 3 HEC C 1 301 296 HEC HEM . 
I 4 51V C 1 302 901 51V TOL . 
J 3 HEC D 1 201 104 HEC HEM . 
K 5 HOH A 1 401 4 HOH HOH . 
K 5 HOH A 2 402 8 HOH HOH . 
K 5 HOH A 3 403 1 HOH HOH . 
L 5 HOH B 1 301 2 HOH HOH . 
M 5 HOH C 1 401 6 HOH HOH . 
M 5 HOH C 2 402 3 HOH HOH . 
M 5 HOH C 3 403 9 HOH HOH . 
M 5 HOH C 4 404 7 HOH HOH . 
M 5 HOH C 5 405 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . J 3 7.063 1.298 3.168 1 113.75 ? FE HEC 201 D 1 
HETATM 2 C CHA HEC . . . J 3 8.39 -1.821 3.718 1 117.09 ? CHA HEC 201 D 1 
HETATM 3 C CHB HEC . . . J 3 5.457 1.082 6.257 1 110.85 ? CHB HEC 201 D 1 
HETATM 4 C CHC HEC . . . J 3 6.415 4.649 3.099 1 104.54 ? CHC HEC 201 D 1 
HETATM 5 C CHD HEC . . . J 3 7.868 1.295 -0.075 1 109.26 ? CHD HEC 201 D 1 
HETATM 6 N NA HEC . . . J 3 6.893 -0.13 4.686 1 115.23 ? NA HEC 201 D 1 
HETATM 7 C C1A HEC . . . J 3 7.609 -1.314 4.734 1 115.85 ? C1A HEC 201 D 1 
HETATM 8 C C2A HEC . . . J 3 7.406 -1.916 6.04 1 118.22 ? C2A HEC 201 D 1 
HETATM 9 C C3A HEC . . . J 3 6.59 -1.108 6.736 1 116.97 ? C3A HEC 201 D 1 
HETATM 10 C C4A HEC . . . J 3 6.255 0.028 5.898 1 114.26 ? C4A HEC 201 D 1 
HETATM 11 C CMA HEC . . . J 3 6.095 -1.35 8.187 1 123.17 ? CMA HEC 201 D 1 
HETATM 12 C CAA HEC . . . J 3 8.011 -3.248 6.553 1 126.27 ? CAA HEC 201 D 1 
HETATM 13 C CBA HEC . . . J 3 7.273 -4.427 5.932 1 131.8 ? CBA HEC 201 D 1 
HETATM 14 C CGA HEC . . . J 3 7.737 -5.727 6.538 1 135.25 ? CGA HEC 201 D 1 
HETATM 15 O O1A HEC . . . J 3 7.21 -6.816 6.18 1 137.15 ? O1A HEC 201 D 1 
HETATM 16 O O2A HEC . . . J 3 8.651 -5.671 7.395 1 136.78 ? O2A HEC 201 D 1 
HETATM 17 N NB HEC . . . J 3 6.121 2.625 4.5 1 106.81 ? NB HEC 201 D 1 
HETATM 18 C C1B HEC . . . J 3 5.446 2.314 5.653 1 106.83 ? C1B HEC 201 D 1 
HETATM 19 C C2B HEC . . . J 3 4.732 3.513 6.078 1 95.42 ? C2B HEC 201 D 1 
HETATM 20 C C3B HEC . . . J 3 4.973 4.498 5.181 1 96.4 ? C3B HEC 201 D 1 
HETATM 21 C C4B HEC . . . J 3 5.865 3.959 4.173 1 103.44 ? C4B HEC 201 D 1 
HETATM 22 C CMB HEC . . . J 3 3.822 3.579 7.344 1 96.99 ? CMB HEC 201 D 1 
HETATM 23 C CAB HEC . . . J 3 4.463 5.953 5.183 1 97.51 ? CAB HEC 201 D 1 
HETATM 24 C CBB HEC . . . J 3 4.324 6.616 6.323 1 96.15 ? CBB HEC 201 D 1 
HETATM 25 N NC HEC . . . J 3 7.164 2.762 1.771 1 111.33 ? NC HEC 201 D 1 
HETATM 26 C C1C HEC . . . J 3 6.771 4.067 1.915 1 107.31 ? C1C HEC 201 D 1 
HETATM 27 C C2C HEC . . . J 3 6.808 4.695 0.608 1 105.72 ? C2C HEC 201 D 1 
HETATM 28 C C3C HEC . . . J 3 7.192 3.759 -0.272 1 105.4 ? C3C HEC 201 D 1 
HETATM 29 C C4C HEC . . . J 3 7.441 2.525 0.437 1 106.88 ? C4C HEC 201 D 1 
HETATM 30 C CMC HEC . . . J 3 6.432 6.169 0.297 1 100.86 ? CMC HEC 201 D 1 
HETATM 31 C CAC HEC . . . J 3 7.431 3.889 -1.777 1 94.01 ? CAC HEC 201 D 1 
HETATM 32 C CBC HEC . . . J 3 8.084 4.949 -2.247 1 90.47 ? CBC HEC 201 D 1 
HETATM 33 N ND HEC . . . J 3 7.984 -0.108 1.973 1 119.57 ? ND HEC 201 D 1 
HETATM 34 C C1D HEC . . . J 3 8.302 0.178 0.645 1 115.68 ? C1D HEC 201 D 1 
HETATM 35 C C2D HEC . . . J 3 9.147 -0.901 0.171 1 116.75 ? C2D HEC 201 D 1 
HETATM 36 C C3D HEC . . . J 3 9.313 -1.871 1.365 1 120.14 ? C3D HEC 201 D 1 
HETATM 37 C C4D HEC . . . J 3 8.547 -1.292 2.449 1 118.97 ? C4D HEC 201 D 1 
HETATM 38 C CMD HEC . . . J 3 9.762 -1.043 -1.24 1 118.18 ? CMD HEC 201 D 1 
HETATM 39 C CAD HEC . . . J 3 10.11 -3.197 1.394 1 124.63 ? CAD HEC 201 D 1 
HETATM 40 C CBD HEC . . . J 3 11.578 -2.96 1.715 1 121.16 ? CBD HEC 201 D 1 
HETATM 41 C CGD HEC . . . J 3 12.336 -4.254 1.567 1 124.87 ? CGD HEC 201 D 1 
HETATM 42 O O1D HEC . . . J 3 11.732 -5.253 1.103 1 129.38 ? O1D HEC 201 D 1 
HETATM 43 O O2D HEC . . . J 3 13.545 -4.295 1.906 1 124.06 ? O2D HEC 201 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#