data_5CID
#
_model_server_result.job_id            aPc5qwF1m6gTSqsilYi6Sw 
_model_server_result.datetime_utc      '2024-11-06 03:10:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5CID 
#
_exptl.entry_id    5CID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.33 
_cell.angle_gamma         90 
_cell.entry_id            5CID 
_cell.length_a            45.38 
_cell.length_b            111.906 
_cell.length_c            87.894 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 19 B CYS 14 1_555 G CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
covale ? covale2 B SG CYS 22 B CYS 17 1_555 G CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
covale ? covale3 D SG CYS 19 D CYS 14 1_555 J CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
covale ? covale4 D SG CYS 22 D CYS 17 1_555 J CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 G FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 H FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc6 D SD MET 85 D MET 80 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 146 n n 
FE NB HEC sing 147 n n 
FE NC HEC sing 148 n n 
FE ND HEC sing 149 n n 
CHA C1A HEC doub 150 n n 
CHA C4D HEC sing 151 n n 
CHA HHA HEC sing 152 n n 
CHB C4A HEC doub 153 n n 
CHB C1B HEC sing 154 n n 
CHB HHB HEC sing 155 n n 
CHC C4B HEC doub 156 n n 
CHC C1C HEC sing 157 n n 
CHC HHC HEC sing 158 n n 
CHD C4C HEC doub 159 n n 
CHD C1D HEC sing 160 n n 
CHD HHD HEC sing 161 n n 
NA C1A HEC sing 162 n y 
NA C4A HEC sing 163 n y 
C1A C2A HEC sing 164 n y 
C2A C3A HEC doub 165 n y 
C2A CAA HEC sing 166 n n 
C3A C4A HEC sing 167 n y 
C3A CMA HEC sing 168 n n 
CMA HMA1 HEC sing 169 n n 
CMA HMA2 HEC sing 170 n n 
CMA HMA3 HEC sing 171 n n 
CAA CBA HEC sing 172 n n 
CAA HAA1 HEC sing 173 n n 
CAA HAA2 HEC sing 174 n n 
CBA CGA HEC sing 175 n n 
CBA HBA1 HEC sing 176 n n 
CBA HBA2 HEC sing 177 n n 
CGA O1A HEC doub 178 n n 
CGA O2A HEC sing 179 n n 
O2A H2A HEC sing 180 n n 
NB C1B HEC sing 181 n y 
NB C4B HEC sing 182 n y 
C1B C2B HEC doub 183 n y 
C2B C3B HEC sing 184 n y 
C2B CMB HEC sing 185 n n 
C3B C4B HEC sing 186 n y 
C3B CAB HEC doub 187 e n 
CMB HMB1 HEC sing 188 n n 
CMB HMB2 HEC sing 189 n n 
CMB HMB3 HEC sing 190 n n 
CAB CBB HEC sing 191 n n 
CAB HAB HEC sing 192 n n 
CBB HBB1 HEC sing 193 n n 
CBB HBB2 HEC sing 194 n n 
CBB HBB3 HEC sing 195 n n 
NC C1C HEC sing 196 n y 
NC C4C HEC sing 197 n y 
C1C C2C HEC doub 198 n y 
C2C C3C HEC sing 199 n y 
C2C CMC HEC sing 200 n n 
C3C C4C HEC sing 201 n y 
C3C CAC HEC doub 202 e n 
CMC HMC1 HEC sing 203 n n 
CMC HMC2 HEC sing 204 n n 
CMC HMC3 HEC sing 205 n n 
CAC CBC HEC sing 206 n n 
CAC HAC HEC sing 207 n n 
CBC HBC1 HEC sing 208 n n 
CBC HBC2 HEC sing 209 n n 
CBC HBC3 HEC sing 210 n n 
ND C1D HEC sing 211 n y 
ND C4D HEC sing 212 n y 
C1D C2D HEC doub 213 n y 
C2D C3D HEC sing 214 n y 
C2D CMD HEC sing 215 n n 
C3D C4D HEC doub 216 n y 
C3D CAD HEC sing 217 n n 
CMD HMD1 HEC sing 218 n n 
CMD HMD2 HEC sing 219 n n 
CMD HMD3 HEC sing 220 n n 
CAD CBD HEC sing 221 n n 
CAD HAD1 HEC sing 222 n n 
CAD HAD2 HEC sing 223 n n 
CBD CGD HEC sing 224 n n 
CBD HBD1 HEC sing 225 n n 
CBD HBD2 HEC sing 226 n n 
CGD O1D HEC doub 227 n n 
CGD O2D HEC sing 228 n n 
O2D H2D HEC sing 229 n n 
#
_atom_sites.entry_id                     5CID 
_atom_sites.fract_transf_matrix[1][1]    0.022036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005629 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011743 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEC A 1 301 296 HEC HEM . 
F 4 51V A 1 302 901 51V TOL . 
G 3 HEC B 1 201 104 HEC HEM . 
H 3 HEC C 1 301 296 HEC HEM . 
I 4 51V C 1 302 901 51V TOL . 
J 3 HEC D 1 201 104 HEC HEM . 
K 5 HOH A 1 401 4 HOH HOH . 
K 5 HOH A 2 402 8 HOH HOH . 
K 5 HOH A 3 403 1 HOH HOH . 
L 5 HOH B 1 301 2 HOH HOH . 
M 5 HOH C 1 401 6 HOH HOH . 
M 5 HOH C 2 402 3 HOH HOH . 
M 5 HOH C 3 403 9 HOH HOH . 
M 5 HOH C 4 404 7 HOH HOH . 
M 5 HOH C 5 405 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . H 3 12.569 20.174 -14.779 1 26.14 ? FE HEC 301 C 1 
HETATM 2 C CHA HEC . . . H 3 9.628 20.382 -12.958 1 46.06 ? CHA HEC 301 C 1 
HETATM 3 C CHB HEC . . . H 3 10.766 21.119 -17.628 1 42.12 ? CHB HEC 301 C 1 
HETATM 4 C CHC HEC . . . H 3 15.411 20.068 -16.717 1 39.84 ? CHC HEC 301 C 1 
HETATM 5 C CHD HEC . . . H 3 14.386 19.789 -11.981 1 41.05 ? CHD HEC 301 C 1 
HETATM 6 N NA HEC . . . H 3 10.568 20.664 -15.207 1 45.67 ? NA HEC 301 C 1 
HETATM 7 C C1A HEC . . . H 3 9.526 20.676 -14.301 1 41.01 ? C1A HEC 301 C 1 
HETATM 8 C C2A HEC . . . H 3 8.318 21.047 -15.013 1 42.59 ? C2A HEC 301 C 1 
HETATM 9 C C3A HEC . . . H 3 8.644 21.242 -16.296 1 42.16 ? C3A HEC 301 C 1 
HETATM 10 C C4A HEC . . . H 3 10.061 21.009 -16.446 1 44.62 ? C4A HEC 301 C 1 
HETATM 11 C CMA HEC . . . H 3 7.696 21.653 -17.446 1 39.77 ? CMA HEC 301 C 1 
HETATM 12 C CAA HEC . . . H 3 6.899 21.186 -14.411 1 38.17 ? CAA HEC 301 C 1 
HETATM 13 C CBA HEC . . . H 3 6.808 22.282 -13.354 1 37.61 ? CBA HEC 301 C 1 
HETATM 14 C CGA HEC . . . H 3 5.379 22.359 -12.873 1 43.88 ? CGA HEC 301 C 1 
HETATM 15 O O1A HEC . . . H 3 4.479 21.815 -13.56 1 50.26 ? O1A HEC 301 C 1 
HETATM 16 O O2A HEC . . . H 3 5.117 22.967 -11.806 1 48.05 ? O2A HEC 301 C 1 
HETATM 17 N NB HEC . . . H 3 13.017 20.617 -16.799 1 38.77 ? NB HEC 301 C 1 
HETATM 18 C C1B HEC . . . H 3 12.094 20.807 -17.807 1 34.06 ? C1B HEC 301 C 1 
HETATM 19 C C2B HEC . . . H 3 12.752 20.611 -19.086 1 44.77 ? C2B HEC 301 C 1 
HETATM 20 C C3B HEC . . . H 3 14.042 20.326 -18.839 1 44.91 ? C3B HEC 301 C 1 
HETATM 21 C C4B HEC . . . H 3 14.229 20.318 -17.393 1 41.71 ? C4B HEC 301 C 1 
HETATM 22 C CMB HEC . . . H 3 12.038 20.744 -20.455 1 41.52 ? CMB HEC 301 C 1 
HETATM 23 C CAB HEC . . . H 3 15.178 20.019 -19.845 1 37.91 ? CAB HEC 301 C 1 
HETATM 24 C CBB HEC . . . H 3 14.987 19.76 -21.141 1 40.47 ? CBB HEC 301 C 1 
HETATM 25 N NC HEC . . . H 3 14.547 19.946 -14.424 1 41.69 ? NC HEC 301 C 1 
HETATM 26 C C1C HEC . . . H 3 15.575 19.98 -15.343 1 42.99 ? C1C HEC 301 C 1 
HETATM 27 C C2C HEC . . . H 3 16.83 19.891 -14.606 1 43.23 ? C2C HEC 301 C 1 
HETATM 28 C C3C HEC . . . H 3 16.532 19.818 -13.292 1 44.34 ? C3C HEC 301 C 1 
HETATM 29 C C4C HEC . . . H 3 15.09 19.85 -13.164 1 40.53 ? C4C HEC 301 C 1 
HETATM 30 C CMC HEC . . . H 3 18.23 19.893 -15.268 1 40.29 ? CMC HEC 301 C 1 
HETATM 31 C CAC HEC . . . H 3 17.459 19.704 -12.051 1 41.98 ? CAC HEC 301 C 1 
HETATM 32 C CBC HEC . . . H 3 18.785 19.539 -12.097 1 39.7 ? CBC HEC 301 C 1 
HETATM 33 N ND HEC . . . H 3 12.076 20.173 -12.758 1 40.71 ? ND HEC 301 C 1 
HETATM 34 C C1D HEC . . . H 3 13.018 19.805 -11.81 1 38.72 ? C1D HEC 301 C 1 
HETATM 35 C C2D HEC . . . H 3 12.329 19.444 -10.593 1 43.21 ? C2D HEC 301 C 1 
HETATM 36 C C3D HEC . . . H 3 10.835 19.627 -10.892 1 44.81 ? C3D HEC 301 C 1 
HETATM 37 C C4D HEC . . . H 3 10.78 20.086 -12.262 1 42.58 ? C4D HEC 301 C 1 
HETATM 38 C CMD HEC . . . H 3 12.967 18.972 -9.27 1 41.5 ? CMD HEC 301 C 1 
HETATM 39 C CAD HEC . . . H 3 9.652 19.387 -9.928 1 42.62 ? CAD HEC 301 C 1 
HETATM 40 C CBD HEC . . . H 3 9.293 20.731 -9.299 1 38.4 ? CBD HEC 301 C 1 
HETATM 41 C CGD HEC . . . H 3 8.137 20.61 -8.338 1 41.88 ? CGD HEC 301 C 1 
HETATM 42 O O1D HEC . . . H 3 7.707 21.668 -7.811 1 44.06 ? O1D HEC 301 C 1 
HETATM 43 O O2D HEC . . . H 3 7.649 19.473 -8.091 1 42.22 ? O2D HEC 301 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#