data_5CIH
#
_model_server_result.job_id            Us1rBwsid1mYkGwFmvflFw 
_model_server_result.datetime_utc      '2024-11-27 11:04:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    5CIH 
#
_exptl.entry_id    5CIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.32 
_cell.angle_gamma         90 
_cell.entry_id            5CIH 
_cell.length_a            45.451 
_cell.length_b            114.219 
_cell.length_c            88.258 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 14 B CYS 14 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 sing 
covale ? covale2 B SG CYS 17 B CYS 17 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 sing 
covale ? covale3 D SG CYS 14 D CYS 14 1_555 H CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
covale ? covale4 D SG CYS 17 D CYS 17 1_555 H CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 sing 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 B NE2 HIS 18 B HIS 18 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 B SD MET 80 B MET 80 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc5 D NE2 HIS 18 D HIS 18 1_555 H FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc6 D SD MET 80 D MET 80 1_555 H FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     5CIH 
_atom_sites.fract_transf_matrix[1][1]    0.022002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005618 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011694 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEC A 1 301 296 HEC HEM . 
F 3 HEC B 1 201 104 HEC HEM . 
G 3 HEC C 1 301 296 HEC HEM . 
H 3 HEC D 1 201 104 HEC HEM . 
I 4 HOH A 1 401 10 HOH HOH . 
I 4 HOH A 2 402 35 HOH HOH . 
I 4 HOH A 3 403 13 HOH HOH . 
I 4 HOH A 4 404 15 HOH HOH . 
I 4 HOH A 5 405 28 HOH HOH . 
I 4 HOH A 6 406 11 HOH HOH . 
I 4 HOH A 7 407 9 HOH HOH . 
I 4 HOH A 8 408 2 HOH HOH . 
I 4 HOH A 9 409 8 HOH HOH . 
I 4 HOH A 10 410 17 HOH HOH . 
I 4 HOH A 11 411 19 HOH HOH . 
I 4 HOH A 12 412 6 HOH HOH . 
I 4 HOH A 13 413 32 HOH HOH . 
I 4 HOH A 14 414 20 HOH HOH . 
I 4 HOH A 15 415 18 HOH HOH . 
I 4 HOH A 16 416 36 HOH HOH . 
I 4 HOH A 17 417 39 HOH HOH . 
I 4 HOH A 18 418 40 HOH HOH . 
I 4 HOH A 19 419 29 HOH HOH . 
I 4 HOH A 20 420 22 HOH HOH . 
I 4 HOH A 21 421 21 HOH HOH . 
I 4 HOH A 22 422 4 HOH HOH . 
I 4 HOH A 23 423 23 HOH HOH . 
J 4 HOH B 1 301 27 HOH HOH . 
J 4 HOH B 2 302 30 HOH HOH . 
J 4 HOH B 3 303 16 HOH HOH . 
K 4 HOH C 1 401 37 HOH HOH . 
K 4 HOH C 2 402 12 HOH HOH . 
K 4 HOH C 3 403 14 HOH HOH . 
K 4 HOH C 4 404 38 HOH HOH . 
K 4 HOH C 5 405 1 HOH HOH . 
K 4 HOH C 6 406 34 HOH HOH . 
K 4 HOH C 7 407 25 HOH HOH . 
K 4 HOH C 8 408 24 HOH HOH . 
L 4 HOH D 1 301 31 HOH HOH . 
L 4 HOH D 2 302 5 HOH HOH . 
L 4 HOH D 3 303 33 HOH HOH . 
L 4 HOH D 4 304 26 HOH HOH . 
L 4 HOH D 5 305 3 HOH HOH . 
L 4 HOH D 6 306 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . H 3 -27.846 1.409 -39.743 1 324.15 ? FE HEC 201 D 1 
HETATM 2 C CHA HEC . . . H 3 -26.783 -1.756 -39.131 1 80.84 ? CHA HEC 201 D 1 
HETATM 3 C CHB HEC . . . H 3 -29.857 1.288 -36.963 1 84.31 ? CHB HEC 201 D 1 
HETATM 4 C CHC HEC . . . H 3 -28.618 4.751 -40.124 1 81.1 ? CHC HEC 201 D 1 
HETATM 5 C CHD HEC . . . H 3 -26.551 1.367 -42.912 1 80.88 ? CHD HEC 201 D 1 
HETATM 6 N NA HEC . . . H 3 -28.281 -0.02 -38.319 1 86.76 ? NA HEC 201 D 1 
HETATM 7 C C1A HEC . . . H 3 -27.651 -1.243 -38.185 1 91.36 ? C1A HEC 201 D 1 
HETATM 8 C C2A HEC . . . H 3 -28.076 -1.825 -36.91 1 96.9 ? C2A HEC 201 D 1 
HETATM 9 C C3A HEC . . . H 3 -28.921 -0.962 -36.34 1 98.5 ? C3A HEC 201 D 1 
HETATM 10 C C4A HEC . . . H 3 -29.07 0.185 -37.206 1 89.93 ? C4A HEC 201 D 1 
HETATM 11 C CMA HEC . . . H 3 -29.623 -1.159 -34.978 1 109.12 ? CMA HEC 201 D 1 
HETATM 12 C CAA HEC . . . H 3 -27.699 -3.169 -36.227 1 87.05 ? CAA HEC 201 D 1 
HETATM 13 C CBA HEC . . . H 3 -27.081 -4.218 -37.144 1 102.58 ? CBA HEC 201 D 1 
HETATM 14 C CGA HEC . . . H 3 -25.589 -4.215 -36.943 1 119.55 ? CGA HEC 201 D 1 
HETATM 15 O O1A HEC . . . H 3 -24.849 -4.591 -37.888 1 128.79 ? O1A HEC 201 D 1 
HETATM 16 O O2A HEC . . . H 3 -25.136 -3.822 -35.837 1 124.64 ? O2A HEC 201 D 1 
HETATM 17 N NB HEC . . . H 3 -29.035 2.766 -38.745 1 71.37 ? NB HEC 201 D 1 
HETATM 18 C C1B HEC . . . H 3 -29.748 2.509 -37.591 1 80.03 ? C1B HEC 201 D 1 
HETATM 19 C C2B HEC . . . H 3 -30.366 3.741 -37.15 1 80.68 ? C2B HEC 201 D 1 
HETATM 20 C C3B HEC . . . H 3 -30.026 4.71 -38.024 1 82.37 ? C3B HEC 201 D 1 
HETATM 21 C C4B HEC . . . H 3 -29.184 4.107 -39.041 1 80.98 ? C4B HEC 201 D 1 
HETATM 22 C CMB HEC . . . H 3 -31.244 3.826 -35.88 1 78.32 ? CMB HEC 201 D 1 
HETATM 23 C CAB HEC . . . H 3 -30.405 6.215 -38.039 1 94.6 ? CAB HEC 201 D 1 
HETATM 24 C CBB HEC . . . H 3 -31.19 6.818 -37.138 1 92.65 ? CBB HEC 201 D 1 
HETATM 25 N NC HEC . . . H 3 -27.598 2.815 -41.226 1 91.65 ? NC HEC 201 D 1 
HETATM 26 C C1C HEC . . . H 3 -28.042 4.122 -41.208 1 86.77 ? C1C HEC 201 D 1 
HETATM 27 C C2C HEC . . . H 3 -27.796 4.704 -42.515 1 82.84 ? C2C HEC 201 D 1 
HETATM 28 C C3C HEC . . . H 3 -27.228 3.758 -43.289 1 84.72 ? C3C HEC 201 D 1 
HETATM 29 C C4C HEC . . . H 3 -27.089 2.561 -42.483 1 86.72 ? C4C HEC 201 D 1 
HETATM 30 C CMC HEC . . . H 3 -28.163 6.16 -42.884 1 78.81 ? CMC HEC 201 D 1 
HETATM 31 C CAC HEC . . . H 3 -26.752 3.823 -44.765 1 100.28 ? CAC HEC 201 D 1 
HETATM 32 C CBC HEC . . . H 3 -26.689 4.937 -45.502 1 100.12 ? CBC HEC 201 D 1 
HETATM 33 N ND HEC . . . H 3 -26.838 0.022 -40.857 1 76.14 ? ND HEC 201 D 1 
HETATM 34 C C1D HEC . . . H 3 -26.37 0.231 -42.153 1 82.95 ? C1D HEC 201 D 1 
HETATM 35 C C2D HEC . . . H 3 -25.648 -0.945 -42.579 1 81.32 ? C2D HEC 201 D 1 
HETATM 36 C C3D HEC . . . H 3 -25.728 -1.917 -41.398 1 88.98 ? C3D HEC 201 D 1 
HETATM 37 C C4D HEC . . . H 3 -26.48 -1.233 -40.372 1 80.25 ? C4D HEC 201 D 1 
HETATM 38 C CMD HEC . . . H 3 -24.949 -1.182 -43.933 1 71.66 ? CMD HEC 201 D 1 
HETATM 39 C CAD HEC . . . H 3 -25.114 -3.327 -41.328 1 92.63 ? CAD HEC 201 D 1 
HETATM 40 C CBD HEC . . . H 3 -23.625 -3.167 -41.057 1 99.76 ? CBD HEC 201 D 1 
HETATM 41 C CGD HEC . . . H 3 -22.91 -4.416 -41.482 1 98.6 ? CGD HEC 201 D 1 
HETATM 42 O O1D HEC . . . H 3 -23.283 -4.994 -42.536 1 99.53 ? O1D HEC 201 D 1 
HETATM 43 O O2D HEC . . . H 3 -21.961 -4.835 -40.771 1 95.24 ? O2D HEC 201 D 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#