data_5CIH # _model_server_result.job_id kqQ5-ETUz4_UZ9qvbOKlCw _model_server_result.datetime_utc '2024-10-14 07:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5CIH # _exptl.entry_id 5CIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.32 _cell.angle_gamma 90 _cell.entry_id 5CIH _cell.length_a 45.451 _cell.length_b 114.219 _cell.length_c 88.258 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 14 B CYS 14 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 sing covale ? covale2 B SG CYS 17 B CYS 17 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 sing covale ? covale3 D SG CYS 14 D CYS 14 1_555 H CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale4 D SG CYS 17 D CYS 17 1_555 H CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 sing metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 B NE2 HIS 18 B HIS 18 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 B SD MET 80 B MET 80 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 D NE2 HIS 18 D HIS 18 1_555 H FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 D SD MET 80 D MET 80 1_555 H FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CIH _atom_sites.fract_transf_matrix[1][1] 0.022002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEC A 1 301 296 HEC HEM . F 3 HEC B 1 201 104 HEC HEM . G 3 HEC C 1 301 296 HEC HEM . H 3 HEC D 1 201 104 HEC HEM . I 4 HOH A 1 401 10 HOH HOH . I 4 HOH A 2 402 35 HOH HOH . I 4 HOH A 3 403 13 HOH HOH . I 4 HOH A 4 404 15 HOH HOH . I 4 HOH A 5 405 28 HOH HOH . I 4 HOH A 6 406 11 HOH HOH . I 4 HOH A 7 407 9 HOH HOH . I 4 HOH A 8 408 2 HOH HOH . I 4 HOH A 9 409 8 HOH HOH . I 4 HOH A 10 410 17 HOH HOH . I 4 HOH A 11 411 19 HOH HOH . I 4 HOH A 12 412 6 HOH HOH . I 4 HOH A 13 413 32 HOH HOH . I 4 HOH A 14 414 20 HOH HOH . I 4 HOH A 15 415 18 HOH HOH . I 4 HOH A 16 416 36 HOH HOH . I 4 HOH A 17 417 39 HOH HOH . I 4 HOH A 18 418 40 HOH HOH . I 4 HOH A 19 419 29 HOH HOH . I 4 HOH A 20 420 22 HOH HOH . I 4 HOH A 21 421 21 HOH HOH . I 4 HOH A 22 422 4 HOH HOH . I 4 HOH A 23 423 23 HOH HOH . J 4 HOH B 1 301 27 HOH HOH . J 4 HOH B 2 302 30 HOH HOH . J 4 HOH B 3 303 16 HOH HOH . K 4 HOH C 1 401 37 HOH HOH . K 4 HOH C 2 402 12 HOH HOH . K 4 HOH C 3 403 14 HOH HOH . K 4 HOH C 4 404 38 HOH HOH . K 4 HOH C 5 405 1 HOH HOH . K 4 HOH C 6 406 34 HOH HOH . K 4 HOH C 7 407 25 HOH HOH . K 4 HOH C 8 408 24 HOH HOH . L 4 HOH D 1 301 31 HOH HOH . L 4 HOH D 2 302 5 HOH HOH . L 4 HOH D 3 303 33 HOH HOH . L 4 HOH D 4 304 26 HOH HOH . L 4 HOH D 5 305 3 HOH HOH . L 4 HOH D 6 306 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . G 3 -22.256 19.951 -57.613 1 55.56 ? FE HEC 301 C 1 HETATM 2 C CHA HEC . . . G 3 -25.059 20.252 -55.644 1 38.62 ? CHA HEC 301 C 1 HETATM 3 C CHB HEC . . . G 3 -24.03 20.917 -60.348 1 45.43 ? CHB HEC 301 C 1 HETATM 4 C CHC HEC . . . G 3 -19.415 19.668 -59.595 1 51.24 ? CHC HEC 301 C 1 HETATM 5 C CHD HEC . . . G 3 -20.304 19.363 -54.842 1 58.19 ? CHD HEC 301 C 1 HETATM 6 N NA HEC . . . G 3 -24.178 20.511 -57.92 1 60.4 ? NA HEC 301 C 1 HETATM 7 C C1A HEC . . . G 3 -25.202 20.518 -56.99 1 45.36 ? C1A HEC 301 C 1 HETATM 8 C C2A HEC . . . G 3 -26.431 20.845 -57.692 1 48.01 ? C2A HEC 301 C 1 HETATM 9 C C3A HEC . . . G 3 -26.128 21.024 -58.982 1 46.31 ? C3A HEC 301 C 1 HETATM 10 C C4A HEC . . . G 3 -24.711 20.818 -59.155 1 49.63 ? C4A HEC 301 C 1 HETATM 11 C CMA HEC . . . G 3 -27.101 21.386 -60.12 1 50.43 ? CMA HEC 301 C 1 HETATM 12 C CAA HEC . . . G 3 -27.849 20.976 -57.086 1 30.45 ? CAA HEC 301 C 1 HETATM 13 C CBA HEC . . . G 3 -27.892 22.051 -56.002 1 24.79 ? CBA HEC 301 C 1 HETATM 14 C CGA HEC . . . G 3 -29.3 22.204 -55.483 1 44.19 ? CGA HEC 301 C 1 HETATM 15 O O1A HEC . . . G 3 -30.238 21.64 -56.103 1 39.48 ? O1A HEC 301 C 1 HETATM 16 O O2A HEC . . . G 3 -29.489 22.896 -54.45 1 42.3 ? O2A HEC 301 C 1 HETATM 17 N NB HEC . . . G 3 -21.78 20.306 -59.592 1 50.38 ? NB HEC 301 C 1 HETATM 18 C C1B HEC . . . G 3 -22.72 20.563 -60.567 1 47.76 ? C1B HEC 301 C 1 HETATM 19 C C2B HEC . . . G 3 -22.097 20.396 -61.862 1 53.36 ? C2B HEC 301 C 1 HETATM 20 C C3B HEC . . . G 3 -20.811 20.049 -61.661 1 54.29 ? C3B HEC 301 C 1 HETATM 21 C C4B HEC . . . G 3 -20.597 19.988 -60.227 1 52.02 ? C4B HEC 301 C 1 HETATM 22 C CMB HEC . . . G 3 -22.858 20.605 -63.192 1 56.89 ? CMB HEC 301 C 1 HETATM 23 C CAB HEC . . . G 3 -19.688 19.747 -62.689 1 37.74 ? CAB HEC 301 C 1 HETATM 24 C CBB HEC . . . G 3 -19.841 19.775 -64.018 1 37.31 ? CBB HEC 301 C 1 HETATM 25 N NC HEC . . . G 3 -20.242 19.505 -57.291 1 50.65 ? NC HEC 301 C 1 HETATM 26 C C1C HEC . . . G 3 -19.234 19.599 -58.231 1 44.44 ? C1C HEC 301 C 1 HETATM 27 C C2C HEC . . . G 3 -17.958 19.612 -57.542 1 37.55 ? C2C HEC 301 C 1 HETATM 28 C C3C HEC . . . G 3 -18.203 19.529 -56.22 1 50.39 ? C3C HEC 301 C 1 HETATM 29 C C4C HEC . . . G 3 -19.643 19.46 -56.048 1 47.48 ? C4C HEC 301 C 1 HETATM 30 C CMC HEC . . . G 3 -16.599 19.708 -58.275 1 29.15 ? CMC HEC 301 C 1 HETATM 31 C CAC HEC . . . G 3 -17.216 19.5 -55.021 1 35.11 ? CAC HEC 301 C 1 HETATM 32 C CBC HEC . . . G 3 -15.881 19.517 -55.119 1 38.39 ? CBC HEC 301 C 1 HETATM 33 N ND HEC . . . G 3 -22.617 19.899 -55.543 1 46.17 ? ND HEC 301 C 1 HETATM 34 C C1D HEC . . . G 3 -21.664 19.463 -54.625 1 58.59 ? C1D HEC 301 C 1 HETATM 35 C C2D HEC . . . G 3 -22.333 19.126 -53.387 1 45.67 ? C2D HEC 301 C 1 HETATM 36 C C3D HEC . . . G 3 -23.82 19.406 -53.631 1 38.45 ? C3D HEC 301 C 1 HETATM 37 C C4D HEC . . . G 3 -23.899 19.879 -54.997 1 41.09 ? C4D HEC 301 C 1 HETATM 38 C CMD HEC . . . G 3 -21.689 18.599 -52.088 1 44.02 ? CMD HEC 301 C 1 HETATM 39 C CAD HEC . . . G 3 -24.976 19.209 -52.623 1 13.16 ? CAD HEC 301 C 1 HETATM 40 C CBD HEC . . . G 3 -25.534 20.567 -52.207 1 24.22 ? CBD HEC 301 C 1 HETATM 41 C CGD HEC . . . G 3 -26.519 20.404 -51.078 1 36.55 ? CGD HEC 301 C 1 HETATM 42 O O1D HEC . . . G 3 -27.042 21.438 -50.589 1 45.37 ? O1D HEC 301 C 1 HETATM 43 O O2D HEC . . . G 3 -26.78 19.244 -50.664 1 26.2 ? O2D HEC 301 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #