data_5CIS # _model_server_result.job_id pr9nEgE27d0ycPMuSRXIvA _model_server_result.datetime_utc '2024-10-22 15:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5CIS # _exptl.entry_id 5CIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CIS _cell.length_a 66.93 _cell.length_b 98.3 _cell.length_c 121.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 53 1_555 A SG CYS 70 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 122 A CYS 123 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 132 A CYS 133 1_555 A SG CYS 145 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 147 A CYS 148 1_555 A SG CYS 160 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 164 A CYS 165 1_555 A SG CYS 191 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 221 A CYS 222 1_555 A SG CYS 239 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 83 A ASN 84 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A OE1 GLU 47 A GLU 48 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 A OD1 ASP 55 A ASP 56 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A OD2 ASP 55 A ASP 56 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc4 A OD1 ASP 100 A ASP 101 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 A O SER 102 A SER 103 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 A OD1 ASN 103 A ASN 104 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 A OD1 ASP 118 A ASP 119 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc8 A O VAL 119 A VAL 120 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc9 A OE1 GLU 121 A GLU 122 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc10 A OD1 ASN 138 A ASN 139 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 A O TYR 139 A TYR 140 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 A O GLY 142 A GLY 143 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc13 A OE2 GLU 214 A GLU 215 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 A OD1 ASP 224 A ASP 225 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc15 A OD2 ASP 224 A ASP 225 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc16 A OD1 ASP 261 A ASP 262 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc17 A O SER 263 A SER 264 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc18 B CA CA . A CA 301 1_555 F O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc19 C CA CA . A CA 302 1_555 F O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc20 D CA CA . A CA 303 1_555 F O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5CIS _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 290 CA CA . C 2 CA A 1 302 291 CA CA . D 2 CA A 1 303 292 CA CA . E 3 NAG A 1 304 300 NAG NAG . F 4 HOH A 1 401 53 HOH HOH . F 4 HOH A 2 402 40 HOH HOH . F 4 HOH A 3 403 82 HOH HOH . F 4 HOH A 4 404 23 HOH HOH . F 4 HOH A 5 405 24 HOH HOH . F 4 HOH A 6 406 35 HOH HOH . F 4 HOH A 7 407 32 HOH HOH . F 4 HOH A 8 408 19 HOH HOH . F 4 HOH A 9 409 26 HOH HOH . F 4 HOH A 10 410 83 HOH HOH . F 4 HOH A 11 411 81 HOH HOH . F 4 HOH A 12 412 44 HOH HOH . F 4 HOH A 13 413 42 HOH HOH . F 4 HOH A 14 414 80 HOH HOH . F 4 HOH A 15 415 71 HOH HOH . F 4 HOH A 16 416 16 HOH HOH . F 4 HOH A 17 417 56 HOH HOH . F 4 HOH A 18 418 57 HOH HOH . F 4 HOH A 19 419 18 HOH HOH . F 4 HOH A 20 420 2 HOH HOH . F 4 HOH A 21 421 21 HOH HOH . F 4 HOH A 22 422 46 HOH HOH . F 4 HOH A 23 423 27 HOH HOH . F 4 HOH A 24 424 74 HOH HOH . F 4 HOH A 25 425 75 HOH HOH . F 4 HOH A 26 426 30 HOH HOH . F 4 HOH A 27 427 69 HOH HOH . F 4 HOH A 28 428 25 HOH HOH . F 4 HOH A 29 429 62 HOH HOH . F 4 HOH A 30 430 15 HOH HOH . F 4 HOH A 31 431 38 HOH HOH . F 4 HOH A 32 432 12 HOH HOH . F 4 HOH A 33 433 88 HOH HOH . F 4 HOH A 34 434 87 HOH HOH . F 4 HOH A 35 435 1 HOH HOH . F 4 HOH A 36 436 29 HOH HOH . F 4 HOH A 37 437 43 HOH HOH . F 4 HOH A 38 438 5 HOH HOH . F 4 HOH A 39 439 50 HOH HOH . F 4 HOH A 40 440 48 HOH HOH . F 4 HOH A 41 441 51 HOH HOH . F 4 HOH A 42 442 14 HOH HOH . F 4 HOH A 43 443 3 HOH HOH . F 4 HOH A 44 444 13 HOH HOH . F 4 HOH A 45 445 22 HOH HOH . F 4 HOH A 46 446 33 HOH HOH . F 4 HOH A 47 447 20 HOH HOH . F 4 HOH A 48 448 9 HOH HOH . F 4 HOH A 49 449 77 HOH HOH . F 4 HOH A 50 450 31 HOH HOH . F 4 HOH A 51 451 10 HOH HOH . F 4 HOH A 52 452 6 HOH HOH . F 4 HOH A 53 453 7 HOH HOH . F 4 HOH A 54 454 11 HOH HOH . F 4 HOH A 55 455 36 HOH HOH . F 4 HOH A 56 456 52 HOH HOH . F 4 HOH A 57 457 4 HOH HOH . F 4 HOH A 58 458 54 HOH HOH . F 4 HOH A 59 459 61 HOH HOH . F 4 HOH A 60 460 47 HOH HOH . F 4 HOH A 61 461 68 HOH HOH . F 4 HOH A 62 462 65 HOH HOH . F 4 HOH A 63 463 17 HOH HOH . F 4 HOH A 64 464 34 HOH HOH . F 4 HOH A 65 465 8 HOH HOH . F 4 HOH A 66 466 60 HOH HOH . F 4 HOH A 67 467 55 HOH HOH . F 4 HOH A 68 468 76 HOH HOH . F 4 HOH A 69 469 28 HOH HOH . F 4 HOH A 70 470 45 HOH HOH . F 4 HOH A 71 471 63 HOH HOH . F 4 HOH A 72 472 84 HOH HOH . F 4 HOH A 73 473 89 HOH HOH . F 4 HOH A 74 474 67 HOH HOH . F 4 HOH A 75 475 72 HOH HOH . F 4 HOH A 76 476 58 HOH HOH . F 4 HOH A 77 477 59 HOH HOH . F 4 HOH A 78 478 41 HOH HOH . F 4 HOH A 79 479 73 HOH HOH . F 4 HOH A 80 480 85 HOH HOH . F 4 HOH A 81 481 49 HOH HOH . F 4 HOH A 82 482 70 HOH HOH . F 4 HOH A 83 483 78 HOH HOH . F 4 HOH A 84 484 64 HOH HOH . F 4 HOH A 85 485 37 HOH HOH . F 4 HOH A 86 486 86 HOH HOH . F 4 HOH A 87 487 39 HOH HOH . F 4 HOH A 88 488 79 HOH HOH . F 4 HOH A 89 489 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -16.705 17.785 -8.198 1 75.89 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . E 3 -16.471 19.272 -7.911 1 86.13 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . E 3 -16.35 20.062 -9.217 1 90.89 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . E 3 -15.308 19.427 -10.13 1 90.51 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . E 3 -15.623 17.949 -10.333 1 85.38 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . E 3 -14.577 17.227 -11.151 1 80.21 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . E 3 -18.804 19.931 -7.388 1 96.86 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . E 3 -19.699 20.541 -6.35 1 93.46 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . E 3 -17.509 19.83 -7.055 1 88.03 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . E 3 -15.979 21.404 -8.922 1 93.81 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . E 3 -15.294 20.084 -11.392 1 88.99 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . E 3 -15.677 17.291 -9.059 1 80.78 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . E 3 -13.35 17.106 -10.443 1 68.94 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . E 3 -19.236 19.55 -8.473 1 104.74 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #