data_5CIU
#
_model_server_result.job_id            1QmQKRgHtsk5NusBxMWDmg 
_model_server_result.datetime_utc      '2025-02-05 14:00:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ciu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    5CIU 
#
_exptl.entry_id    5CIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CIU 
_cell.length_a            73.437 
_cell.length_b            73.437 
_cell.length_c            158.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,I 1 1 
B,C,E,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C VAL 8 C VAL 35 1_555 C N M3L 9 C M3L 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C M3L 9 C M3L 36 1_555 C N LYS 10 C LYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 D C VAL 8 D VAL 35 1_555 D N M3L 9 D M3L 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 D C M3L 9 D M3L 36 1_555 D N LYS 10 D LYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5CIU 
_atom_sites.fract_transf_matrix[1][1]    0.013617 
_atom_sites.fract_transf_matrix[1][2]    0.007862 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL B 1 401 6 GOL GOL . 
F 4 HOH A 1 401 53 HOH HOH . 
F 4 HOH A 2 402 24 HOH HOH . 
F 4 HOH A 3 403 39 HOH HOH . 
F 4 HOH A 4 404 3 HOH HOH . 
F 4 HOH A 5 405 25 HOH HOH . 
F 4 HOH A 6 406 63 HOH HOH . 
F 4 HOH A 7 407 26 HOH HOH . 
F 4 HOH A 8 408 41 HOH HOH . 
F 4 HOH A 9 409 7 HOH HOH . 
F 4 HOH A 10 410 43 HOH HOH . 
F 4 HOH A 11 411 20 HOH HOH . 
F 4 HOH A 12 412 17 HOH HOH . 
F 4 HOH A 13 413 52 HOH HOH . 
F 4 HOH A 14 414 4 HOH HOH . 
F 4 HOH A 15 415 8 HOH HOH . 
F 4 HOH A 16 416 1 HOH HOH . 
F 4 HOH A 17 417 32 HOH HOH . 
F 4 HOH A 18 418 1 HOH HOH . 
F 4 HOH A 19 419 58 HOH HOH . 
F 4 HOH A 20 420 10 HOH HOH . 
F 4 HOH A 21 421 50 HOH HOH . 
F 4 HOH A 22 422 21 HOH HOH . 
F 4 HOH A 23 423 13 HOH HOH . 
F 4 HOH A 24 424 9 HOH HOH . 
F 4 HOH A 25 425 54 HOH HOH . 
F 4 HOH A 26 426 2 HOH HOH . 
F 4 HOH A 27 427 38 HOH HOH . 
F 4 HOH A 28 428 18 HOH HOH . 
F 4 HOH A 29 429 19 HOH HOH . 
F 4 HOH A 30 430 2 HOH HOH . 
F 4 HOH A 31 431 15 HOH HOH . 
F 4 HOH A 32 432 55 HOH HOH . 
F 4 HOH A 33 433 49 HOH HOH . 
F 4 HOH A 34 434 46 HOH HOH . 
F 4 HOH A 35 435 31 HOH HOH . 
F 4 HOH A 36 436 28 HOH HOH . 
F 4 HOH A 37 437 37 HOH HOH . 
F 4 HOH A 38 438 5 HOH HOH . 
F 4 HOH A 39 439 12 HOH HOH . 
F 4 HOH A 40 440 22 HOH HOH . 
F 4 HOH A 41 441 27 HOH HOH . 
F 4 HOH A 42 442 16 HOH HOH . 
F 4 HOH A 43 443 11 HOH HOH . 
F 4 HOH A 44 444 44 HOH HOH . 
F 4 HOH A 45 445 35 HOH HOH . 
F 4 HOH A 46 446 60 HOH HOH . 
F 4 HOH A 47 447 14 HOH HOH . 
F 4 HOH A 48 448 47 HOH HOH . 
F 4 HOH A 49 449 45 HOH HOH . 
F 4 HOH A 50 450 34 HOH HOH . 
F 4 HOH A 51 451 65 HOH HOH . 
F 4 HOH A 52 452 61 HOH HOH . 
F 4 HOH A 53 453 67 HOH HOH . 
F 4 HOH A 54 454 23 HOH HOH . 
F 4 HOH A 55 455 7 HOH HOH . 
F 4 HOH A 56 456 33 HOH HOH . 
F 4 HOH A 57 457 59 HOH HOH . 
F 4 HOH A 58 458 2 HOH HOH . 
F 4 HOH A 59 459 48 HOH HOH . 
F 4 HOH A 60 460 64 HOH HOH . 
F 4 HOH A 61 461 66 HOH HOH . 
F 4 HOH A 62 462 62 HOH HOH . 
F 4 HOH A 63 463 84 HOH HOH . 
F 4 HOH A 64 464 29 HOH HOH . 
F 4 HOH A 65 465 97 HOH HOH . 
F 4 HOH A 66 466 44 HOH HOH . 
F 4 HOH A 67 467 71 HOH HOH . 
F 4 HOH A 68 468 36 HOH HOH . 
F 4 HOH A 69 469 94 HOH HOH . 
F 4 HOH A 70 470 30 HOH HOH . 
F 4 HOH A 71 471 40 HOH HOH . 
F 4 HOH A 72 472 76 HOH HOH . 
F 4 HOH A 73 473 74 HOH HOH . 
F 4 HOH A 74 474 86 HOH HOH . 
F 4 HOH A 75 475 68 HOH HOH . 
F 4 HOH A 76 476 77 HOH HOH . 
F 4 HOH A 77 477 80 HOH HOH . 
F 4 HOH A 78 478 82 HOH HOH . 
F 4 HOH A 79 479 56 HOH HOH . 
F 4 HOH A 80 480 47 HOH HOH . 
F 4 HOH A 81 481 72 HOH HOH . 
F 4 HOH A 82 482 75 HOH HOH . 
F 4 HOH A 83 483 87 HOH HOH . 
F 4 HOH A 84 484 57 HOH HOH . 
F 4 HOH A 85 485 93 HOH HOH . 
F 4 HOH A 86 486 79 HOH HOH . 
F 4 HOH A 87 487 69 HOH HOH . 
F 4 HOH A 88 488 88 HOH HOH . 
F 4 HOH A 89 489 49 HOH HOH . 
F 4 HOH A 90 490 78 HOH HOH . 
F 4 HOH A 91 491 81 HOH HOH . 
F 4 HOH A 92 492 73 HOH HOH . 
F 4 HOH A 93 493 46 HOH HOH . 
F 4 HOH A 94 494 89 HOH HOH . 
F 4 HOH A 95 495 90 HOH HOH . 
F 4 HOH A 96 496 92 HOH HOH . 
F 4 HOH A 97 497 96 HOH HOH . 
G 4 HOH B 1 501 40 HOH HOH . 
G 4 HOH B 2 502 7 HOH HOH . 
G 4 HOH B 3 503 37 HOH HOH . 
G 4 HOH B 4 504 11 HOH HOH . 
G 4 HOH B 5 505 10 HOH HOH . 
G 4 HOH B 6 506 20 HOH HOH . 
G 4 HOH B 7 507 16 HOH HOH . 
G 4 HOH B 8 508 26 HOH HOH . 
G 4 HOH B 9 509 1 HOH HOH . 
G 4 HOH B 10 510 17 HOH HOH . 
G 4 HOH B 11 511 1 HOH HOH . 
G 4 HOH B 12 512 2 HOH HOH . 
G 4 HOH B 13 513 29 HOH HOH . 
G 4 HOH B 14 514 21 HOH HOH . 
G 4 HOH B 15 515 12 HOH HOH . 
G 4 HOH B 16 516 31 HOH HOH . 
G 4 HOH B 17 517 3 HOH HOH . 
G 4 HOH B 18 518 33 HOH HOH . 
G 4 HOH B 19 519 42 HOH HOH . 
G 4 HOH B 20 520 9 HOH HOH . 
G 4 HOH B 21 521 8 HOH HOH . 
G 4 HOH B 22 522 6 HOH HOH . 
G 4 HOH B 23 523 4 HOH HOH . 
G 4 HOH B 24 524 14 HOH HOH . 
G 4 HOH B 25 525 19 HOH HOH . 
G 4 HOH B 26 526 6 HOH HOH . 
G 4 HOH B 27 527 34 HOH HOH . 
G 4 HOH B 28 528 39 HOH HOH . 
G 4 HOH B 29 529 5 HOH HOH . 
G 4 HOH B 30 530 27 HOH HOH . 
G 4 HOH B 31 531 30 HOH HOH . 
G 4 HOH B 32 532 5 HOH HOH . 
G 4 HOH B 33 533 28 HOH HOH . 
G 4 HOH B 34 534 35 HOH HOH . 
G 4 HOH B 35 535 36 HOH HOH . 
G 4 HOH B 36 536 15 HOH HOH . 
G 4 HOH B 37 537 51 HOH HOH . 
G 4 HOH B 38 538 32 HOH HOH . 
G 4 HOH B 39 539 50 HOH HOH . 
G 4 HOH B 40 540 42 HOH HOH . 
G 4 HOH B 41 541 25 HOH HOH . 
G 4 HOH B 42 542 83 HOH HOH . 
G 4 HOH B 43 543 24 HOH HOH . 
G 4 HOH B 44 544 23 HOH HOH . 
G 4 HOH B 45 545 85 HOH HOH . 
G 4 HOH B 46 546 18 HOH HOH . 
G 4 HOH B 47 547 95 HOH HOH . 
G 4 HOH B 48 548 48 HOH HOH . 
G 4 HOH B 49 549 70 HOH HOH . 
G 4 HOH B 50 550 13 HOH HOH . 
G 4 HOH B 51 551 41 HOH HOH . 
G 4 HOH B 52 552 45 HOH HOH . 
G 4 HOH B 53 553 51 HOH HOH . 
G 4 HOH B 54 554 43 HOH HOH . 
H 4 HOH C 1 101 6 HOH HOH . 
H 4 HOH C 2 102 3 HOH HOH . 
H 4 HOH C 3 103 4 HOH HOH . 
H 4 HOH C 4 104 7 HOH HOH . 
I 4 HOH D 1 101 6 HOH HOH . 
I 4 HOH D 2 102 4 HOH HOH . 
I 4 HOH D 3 103 9 HOH HOH . 
I 4 HOH D 4 104 3 HOH HOH . 
I 4 HOH D 5 105 8 HOH HOH . 
I 4 HOH D 6 106 5 HOH HOH . 
I 4 HOH D 7 107 91 HOH HOH . 
I 4 HOH D 8 108 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 13.402 63.41 -29.661 0.62 53.3 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . E 3 12.175 63.612 -30.344 0.62 50.34 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . E 3 13.192 63.356 -28.147 0.62 51.99 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . E 3 11.835 63.071 -27.867 0.62 54.64 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . E 3 14.083 62.282 -27.522 0.62 58.51 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . E 3 13.606 61.951 -26.235 0.62 62.04 ? O3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#