data_5CIZ # _model_server_result.job_id bYCBgabDN7ILIi-2NXAmYw _model_server_result.datetime_utc '2024-10-19 20:14:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ciz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5CIZ # _exptl.entry_id 5CIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CIZ _cell.length_a 176.312 _cell.length_b 176.312 _cell.length_c 158.493 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_657 -x+y+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 176.312 0 316.986 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DC-DG PAIR' hydrog1 C O2 DC 1 D DC 1 1_555 D N2 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N3 DT 2 D DT 2 1_555 D N1 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O4 DT 2 D DT 2 1_555 D N6 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 3 D DT 3 1_555 D N1 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 3 D DT 3 1_555 D N6 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog6 C N3 DT 4 D DT 4 1_555 D N1 DA 21 E DA 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N3 DT 5 D DT 5 1_555 D N1 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O4 DT 5 D DT 5 1_555 D N6 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog9 C N3 DT 6 D DT 6 1_555 D N1 DA 19 E DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog10 C N1 DG 7 D DG 7 1_555 D N3 DC 18 E DC 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DC 8 D DC 8 1_555 D N1 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N4 DC 8 D DC 8 1_555 D O6 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O2 DC 8 D DC 8 1_555 D N2 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog14 C O2 DC 9 D DC 9 1_555 D N2 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N3 DT 10 D DT 10 1_555 D N1 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O4 DT 10 D DT 10 1_555 D N6 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DA 11 D DA 11 1_555 D N3 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N6 DA 11 D DA 11 1_555 D O4 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 DA 12 D DA 12 1_555 D N3 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N6 DA 12 D DA 12 1_555 D O4 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 DA 13 D DA 13 1_555 D N3 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N6 DA 13 D DA 13 1_555 D O4 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DA 14 D DA 14 1_555 D N3 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N6 DA 14 D DA 14 1_555 D O4 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DT 15 D DT 15 1_555 D N1 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O4 DT 15 D DT 15 1_555 D N6 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N1 DG 16 D DG 16 1_555 D N3 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N2 DG 16 D DG 16 1_555 D O2 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O6 DG 16 D DG 16 1_555 D N4 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 DT 17 D DT 17 1_555 D N1 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O4 DT 17 D DT 17 1_555 D N6 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N1 DG 18 D DG 18 1_555 D N3 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N2 DG 18 D DG 18 1_555 D O2 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O6 DG 18 D DG 18 1_555 D N4 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DA 19 D DA 19 1_555 D N3 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N6 DA 19 D DA 19 1_555 D O4 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N3 DT 20 D DT 20 1_555 D N1 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O4 DT 20 D DT 20 1_555 D N6 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D N3 DC 1 E DC 21 1_555 D N1 DG 4 E DG 24 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 D N4 DC 1 E DC 21 1_555 D O6 DG 4 E DG 24 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 D O2 DC 1 E DC 21 1_555 D N2 DG 4 E DG 24 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 D N1 DG 4 E DG 24 1_555 D N3 DC 1 E DC 21 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 D N2 DG 4 E DG 24 1_555 D O2 DC 1 E DC 21 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 D O6 DG 4 E DG 24 1_555 D N4 DC 1 E DC 21 11_657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 5CIZ _atom_sites.fract_transf_matrix[1][1] 0.005672 _atom_sites.fract_transf_matrix[1][2] 0.003275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id CMP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 210 _pdbx_nonpoly_scheme.pdb_mon_id CMP _pdbx_nonpoly_scheme.auth_mon_id CMP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . E 5 87.735 -63.119 147.006 1 185.06 ? P CMP 301 A 1 HETATM 2 O O1P CMP . . . E 5 87.609 -64.244 145.996 1 185.89 ? O1P CMP 301 A 1 HETATM 3 O O2P CMP . . . E 5 86.481 -62.607 147.672 1 186.73 ? O2P CMP 301 A 1 HETATM 4 O O5' CMP . . . E 5 88.273 -61.857 146.176 1 184.81 ? O5' CMP 301 A 1 HETATM 5 C C5' CMP . . . E 5 89.086 -60.84 146.766 1 183.85 ? C5' CMP 301 A 1 HETATM 6 C C4' CMP . . . E 5 90.087 -61.482 147.676 1 182.06 ? C4' CMP 301 A 1 HETATM 7 O O4' CMP . . . E 5 90.892 -60.534 148.408 1 181.37 ? O4' CMP 301 A 1 HETATM 8 C C3' CMP . . . E 5 89.444 -62.297 148.756 1 182.24 ? C3' CMP 301 A 1 HETATM 9 O O3' CMP . . . E 5 88.818 -63.442 148.198 1 183.25 ? O3' CMP 301 A 1 HETATM 10 C C2' CMP . . . E 5 90.596 -62.485 149.75 1 180.86 ? C2' CMP 301 A 1 HETATM 11 O O2' CMP . . . E 5 91.501 -63.498 149.342 1 180.41 ? O2' CMP 301 A 1 HETATM 12 C C1' CMP . . . E 5 91.307 -61.123 149.63 1 180.39 ? C1' CMP 301 A 1 HETATM 13 N N9 CMP . . . E 5 90.94 -60.197 150.718 1 180.74 ? N9 CMP 301 A 1 HETATM 14 C C8 CMP . . . E 5 89.73 -59.599 150.799 1 182.13 ? C8 CMP 301 A 1 HETATM 15 N N7 CMP . . . E 5 89.65 -58.783 151.885 1 182.47 ? N7 CMP 301 A 1 HETATM 16 C C5 CMP . . . E 5 90.835 -58.832 152.524 1 181.22 ? C5 CMP 301 A 1 HETATM 17 C C6 CMP . . . E 5 91.399 -58.199 153.74 1 181.06 ? C6 CMP 301 A 1 HETATM 18 N N6 CMP . . . E 5 90.632 -57.353 154.458 1 182.23 ? N6 CMP 301 A 1 HETATM 19 N N1 CMP . . . E 5 92.671 -58.493 154.102 1 180.15 ? N1 CMP 301 A 1 HETATM 20 C C2 CMP . . . E 5 93.406 -59.344 153.361 1 179.44 ? C2 CMP 301 A 1 HETATM 21 N N3 CMP . . . E 5 92.959 -59.962 152.237 1 179.38 ? N3 CMP 301 A 1 HETATM 22 C C4 CMP . . . E 5 91.695 -59.758 151.757 1 180.19 ? C4 CMP 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #