data_5CJ6 # _model_server_result.job_id ew5v8sR7N1uuvYWb-nVHQQ _model_server_result.datetime_utc '2024-12-23 05:57:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5CJ6 # _exptl.entry_id 5CJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.751 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-4-{[(1R,2R)-2-hydroxy-2-methylcyclopentyl]amino}-3-methylbenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CJ6 _cell.length_a 55.803 _cell.length_b 65.997 _cell.length_c 73.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 Cl N2 O' _chem_comp.formula_weight 264.751 _chem_comp.id 51Y _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-4-{[(1R,2R)-2-hydroxy-2-methylcyclopentyl]amino}-3-methylbenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C10 51Y sing 1 n n CL1 C3 51Y sing 2 n n C5 C4 51Y sing 3 n n C10 C13 51Y sing 4 n n C10 O11 51Y sing 5 n n C10 C9 51Y sing 6 n n C13 C14 51Y sing 7 n n C4 C3 51Y doub 8 n y C4 C6 51Y sing 9 n y C3 C2 51Y sing 10 n y N18 C17 51Y trip 11 n n N8 C6 51Y sing 12 n n N8 C9 51Y sing 13 n n C17 C2 51Y sing 14 n n C2 C1 51Y doub 15 n y C6 C7 51Y doub 16 n y C1 C7 51Y sing 17 n y C9 C15 51Y sing 18 n n C14 C15 51Y sing 19 n n C7 H1 51Y sing 20 n n C1 H2 51Y sing 21 n n C5 H3 51Y sing 22 n n C5 H4 51Y sing 23 n n C5 H5 51Y sing 24 n n N8 H6 51Y sing 25 n n C9 H7 51Y sing 26 n n O11 H8 51Y sing 27 n n C12 H9 51Y sing 28 n n C12 H10 51Y sing 29 n n C12 H11 51Y sing 30 n n C13 H12 51Y sing 31 n n C13 H13 51Y sing 32 n n C14 H14 51Y sing 33 n n C14 H15 51Y sing 34 n n C15 H16 51Y sing 35 n n C15 H17 51Y sing 36 n n # _atom_sites.entry_id 5CJ6 _atom_sites.fract_transf_matrix[1][1] 0.01792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 51Y A 1 1001 1 51Y SX1 . D 4 HOH A 1 1101 22 HOH HOH . D 4 HOH A 2 1102 50 HOH HOH . D 4 HOH A 3 1103 29 HOH HOH . D 4 HOH A 4 1104 34 HOH HOH . D 4 HOH A 5 1105 99 HOH HOH . D 4 HOH A 6 1106 153 HOH HOH . D 4 HOH A 7 1107 71 HOH HOH . D 4 HOH A 8 1108 91 HOH HOH . D 4 HOH A 9 1109 31 HOH HOH . D 4 HOH A 10 1110 116 HOH HOH . D 4 HOH A 11 1111 61 HOH HOH . D 4 HOH A 12 1112 39 HOH HOH . D 4 HOH A 13 1113 111 HOH HOH . D 4 HOH A 14 1114 11 HOH HOH . D 4 HOH A 15 1115 104 HOH HOH . D 4 HOH A 16 1116 30 HOH HOH . D 4 HOH A 17 1117 68 HOH HOH . D 4 HOH A 18 1118 36 HOH HOH . D 4 HOH A 19 1119 54 HOH HOH . D 4 HOH A 20 1120 72 HOH HOH . D 4 HOH A 21 1121 23 HOH HOH . D 4 HOH A 22 1122 73 HOH HOH . D 4 HOH A 23 1123 132 HOH HOH . D 4 HOH A 24 1124 69 HOH HOH . D 4 HOH A 25 1125 79 HOH HOH . D 4 HOH A 26 1126 81 HOH HOH . D 4 HOH A 27 1127 3 HOH HOH . D 4 HOH A 28 1128 48 HOH HOH . D 4 HOH A 29 1129 33 HOH HOH . D 4 HOH A 30 1130 9 HOH HOH . D 4 HOH A 31 1131 57 HOH HOH . D 4 HOH A 32 1132 45 HOH HOH . D 4 HOH A 33 1133 96 HOH HOH . D 4 HOH A 34 1134 128 HOH HOH . D 4 HOH A 35 1135 13 HOH HOH . D 4 HOH A 36 1136 2 HOH HOH . D 4 HOH A 37 1137 42 HOH HOH . D 4 HOH A 38 1138 19 HOH HOH . D 4 HOH A 39 1139 78 HOH HOH . D 4 HOH A 40 1140 56 HOH HOH . D 4 HOH A 41 1141 63 HOH HOH . D 4 HOH A 42 1142 74 HOH HOH . D 4 HOH A 43 1143 15 HOH HOH . D 4 HOH A 44 1144 127 HOH HOH . D 4 HOH A 45 1145 27 HOH HOH . D 4 HOH A 46 1146 85 HOH HOH . D 4 HOH A 47 1147 43 HOH HOH . D 4 HOH A 48 1148 70 HOH HOH . D 4 HOH A 49 1149 35 HOH HOH . D 4 HOH A 50 1150 120 HOH HOH . D 4 HOH A 51 1151 154 HOH HOH . D 4 HOH A 52 1152 14 HOH HOH . D 4 HOH A 53 1153 28 HOH HOH . D 4 HOH A 54 1154 55 HOH HOH . D 4 HOH A 55 1155 66 HOH HOH . D 4 HOH A 56 1156 17 HOH HOH . D 4 HOH A 57 1157 49 HOH HOH . D 4 HOH A 58 1158 87 HOH HOH . D 4 HOH A 59 1159 44 HOH HOH . D 4 HOH A 60 1160 7 HOH HOH . D 4 HOH A 61 1161 58 HOH HOH . D 4 HOH A 62 1162 5 HOH HOH . D 4 HOH A 63 1163 18 HOH HOH . D 4 HOH A 64 1164 6 HOH HOH . D 4 HOH A 65 1165 12 HOH HOH . D 4 HOH A 66 1166 1 HOH HOH . D 4 HOH A 67 1167 64 HOH HOH . D 4 HOH A 68 1168 16 HOH HOH . D 4 HOH A 69 1169 46 HOH HOH . D 4 HOH A 70 1170 21 HOH HOH . D 4 HOH A 71 1171 149 HOH HOH . D 4 HOH A 72 1172 88 HOH HOH . D 4 HOH A 73 1173 148 HOH HOH . D 4 HOH A 74 1174 51 HOH HOH . D 4 HOH A 75 1175 101 HOH HOH . D 4 HOH A 76 1176 25 HOH HOH . D 4 HOH A 77 1177 97 HOH HOH . D 4 HOH A 78 1178 110 HOH HOH . D 4 HOH A 79 1179 151 HOH HOH . D 4 HOH A 80 1180 4 HOH HOH . D 4 HOH A 81 1181 82 HOH HOH . D 4 HOH A 82 1182 59 HOH HOH . D 4 HOH A 83 1183 124 HOH HOH . D 4 HOH A 84 1184 53 HOH HOH . D 4 HOH A 85 1185 52 HOH HOH . D 4 HOH A 86 1186 32 HOH HOH . D 4 HOH A 87 1187 20 HOH HOH . D 4 HOH A 88 1188 109 HOH HOH . D 4 HOH A 89 1189 60 HOH HOH . D 4 HOH A 90 1190 26 HOH HOH . D 4 HOH A 91 1191 123 HOH HOH . D 4 HOH A 92 1192 10 HOH HOH . D 4 HOH A 93 1193 108 HOH HOH . D 4 HOH A 94 1194 40 HOH HOH . D 4 HOH A 95 1195 92 HOH HOH . D 4 HOH A 96 1196 38 HOH HOH . D 4 HOH A 97 1197 129 HOH HOH . D 4 HOH A 98 1198 37 HOH HOH . D 4 HOH A 99 1199 103 HOH HOH . D 4 HOH A 100 1200 105 HOH HOH . D 4 HOH A 101 1201 95 HOH HOH . D 4 HOH A 102 1202 67 HOH HOH . D 4 HOH A 103 1203 157 HOH HOH . D 4 HOH A 104 1204 158 HOH HOH . D 4 HOH A 105 1205 47 HOH HOH . D 4 HOH A 106 1206 144 HOH HOH . D 4 HOH A 107 1207 122 HOH HOH . D 4 HOH A 108 1208 142 HOH HOH . D 4 HOH A 109 1209 107 HOH HOH . D 4 HOH A 110 1210 89 HOH HOH . D 4 HOH A 111 1211 41 HOH HOH . D 4 HOH A 112 1212 86 HOH HOH . D 4 HOH A 113 1213 121 HOH HOH . D 4 HOH A 114 1214 125 HOH HOH . D 4 HOH A 115 1215 146 HOH HOH . D 4 HOH A 116 1216 77 HOH HOH . D 4 HOH A 117 1217 76 HOH HOH . D 4 HOH A 118 1218 112 HOH HOH . D 4 HOH A 119 1219 115 HOH HOH . D 4 HOH A 120 1220 133 HOH HOH . D 4 HOH A 121 1221 93 HOH HOH . D 4 HOH A 122 1222 8 HOH HOH . D 4 HOH A 123 1223 117 HOH HOH . D 4 HOH A 124 1224 84 HOH HOH . D 4 HOH A 125 1225 114 HOH HOH . D 4 HOH A 126 1226 90 HOH HOH . D 4 HOH A 127 1227 24 HOH HOH . D 4 HOH A 128 1228 137 HOH HOH . D 4 HOH A 129 1229 118 HOH HOH . D 4 HOH A 130 1230 62 HOH HOH . D 4 HOH A 131 1231 126 HOH HOH . D 4 HOH A 132 1232 119 HOH HOH . D 4 HOH A 133 1233 83 HOH HOH . D 4 HOH A 134 1234 75 HOH HOH . D 4 HOH A 135 1235 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 51Y . . . C 3 -27.714 3.467 -4.421 1 37.11 ? C7 51Y 1001 A 1 HETATM 2 C C6 51Y . . . C 3 -26.716 2.543 -4.669 1 37.83 ? C6 51Y 1001 A 1 HETATM 3 C C1 51Y . . . C 3 -27.451 4.818 -4.422 1 37.44 ? C1 51Y 1001 A 1 HETATM 4 C C5 51Y . . . C 3 -24.348 2.001 -5.188 1 37.87 ? C5 51Y 1001 A 1 HETATM 5 C C4 51Y . . . C 3 -25.437 2.989 -4.924 1 39.37 ? C4 51Y 1001 A 1 HETATM 6 C C3 51Y . . . C 3 -25.175 4.34 -4.924 1 39.96 ? C3 51Y 1001 A 1 HETATM 7 C C2 51Y . . . C 3 -26.172 5.258 -4.675 1 38.54 ? C2 51Y 1001 A 1 HETATM 8 N N8 51Y . . . C 3 -26.919 1.154 -4.69 1 36.99 ? N8 51Y 1001 A 1 HETATM 9 C C9 51Y . . . C 3 -28.151 0.694 -4.095 1 37.57 ? C9 51Y 1001 A 1 HETATM 10 C C10 51Y . . . C 3 -29.28 0.561 -5.098 1 37.33 ? C10 51Y 1001 A 1 HETATM 11 O O11 51Y . . . C 3 -30.315 1.408 -4.649 1 37 ? O11 51Y 1001 A 1 HETATM 12 C C12 51Y . . . C 3 -28.927 0.913 -6.528 1 38.28 ? C12 51Y 1001 A 1 HETATM 13 C C13 51Y . . . C 3 -29.791 -0.852 -5.044 1 36.94 ? C13 51Y 1001 A 1 HETATM 14 C C14 51Y . . . C 3 -29.105 -1.525 -3.886 1 37.73 ? C14 51Y 1001 A 1 HETATM 15 C C15 51Y . . . C 3 -27.895 -0.692 -3.547 1 38.76 ? C15 51Y 1001 A 1 HETATM 16 CL CL1 51Y . . . C 3 -23.575 4.897 -5.236 1 54.53 ? CL1 51Y 1001 A 1 HETATM 17 C C17 51Y . . . C 3 -25.874 6.654 -4.685 1 38.82 ? C17 51Y 1001 A 1 HETATM 18 N N18 51Y . . . C 3 -25.665 7.8 -4.731 1 38.99 ? N18 51Y 1001 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #