data_5CJE # _model_server_result.job_id G6Pdzsdq2BSUsecdTKONJQ _model_server_result.datetime_utc '2024-11-23 07:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5CJE # _exptl.entry_id 5CJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.91 _cell.angle_gamma 90 _cell.entry_id 5CJE _cell.length_a 110.184 _cell.length_b 50.585 _cell.length_c 74.638 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 344 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.244 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 5CJE _atom_sites.fract_transf_matrix[1][1] 0.009076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001423 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 HEM A 1 402 1 HEM HEM . D 4 HOH A 1 501 60 HOH HOH . D 4 HOH A 2 502 21 HOH HOH . D 4 HOH A 3 503 18 HOH HOH . D 4 HOH A 4 504 39 HOH HOH . D 4 HOH A 5 505 61 HOH HOH . D 4 HOH A 6 506 38 HOH HOH . D 4 HOH A 7 507 52 HOH HOH . D 4 HOH A 8 508 2 HOH HOH . D 4 HOH A 9 509 72 HOH HOH . D 4 HOH A 10 510 19 HOH HOH . D 4 HOH A 11 511 37 HOH HOH . D 4 HOH A 12 512 31 HOH HOH . D 4 HOH A 13 513 74 HOH HOH . D 4 HOH A 14 514 13 HOH HOH . D 4 HOH A 15 515 33 HOH HOH . D 4 HOH A 16 516 79 HOH HOH . D 4 HOH A 17 517 45 HOH HOH . D 4 HOH A 18 518 12 HOH HOH . D 4 HOH A 19 519 43 HOH HOH . D 4 HOH A 20 520 9 HOH HOH . D 4 HOH A 21 521 47 HOH HOH . D 4 HOH A 22 522 35 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 28 HOH HOH . D 4 HOH A 25 525 44 HOH HOH . D 4 HOH A 26 526 51 HOH HOH . D 4 HOH A 27 527 42 HOH HOH . D 4 HOH A 28 528 3 HOH HOH . D 4 HOH A 29 529 16 HOH HOH . D 4 HOH A 30 530 46 HOH HOH . D 4 HOH A 31 531 30 HOH HOH . D 4 HOH A 32 532 36 HOH HOH . D 4 HOH A 33 533 8 HOH HOH . D 4 HOH A 34 534 82 HOH HOH . D 4 HOH A 35 535 1 HOH HOH . D 4 HOH A 36 536 84 HOH HOH . D 4 HOH A 37 537 54 HOH HOH . D 4 HOH A 38 538 40 HOH HOH . D 4 HOH A 39 539 20 HOH HOH . D 4 HOH A 40 540 65 HOH HOH . D 4 HOH A 41 541 6 HOH HOH . D 4 HOH A 42 542 25 HOH HOH . D 4 HOH A 43 543 87 HOH HOH . D 4 HOH A 44 544 41 HOH HOH . D 4 HOH A 45 545 86 HOH HOH . D 4 HOH A 46 546 34 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 23 HOH HOH . D 4 HOH A 49 549 88 HOH HOH . D 4 HOH A 50 550 71 HOH HOH . D 4 HOH A 51 551 17 HOH HOH . D 4 HOH A 52 552 80 HOH HOH . D 4 HOH A 53 553 66 HOH HOH . D 4 HOH A 54 554 29 HOH HOH . D 4 HOH A 55 555 89 HOH HOH . D 4 HOH A 56 556 63 HOH HOH . D 4 HOH A 57 557 32 HOH HOH . D 4 HOH A 58 558 48 HOH HOH . D 4 HOH A 59 559 27 HOH HOH . D 4 HOH A 60 560 76 HOH HOH . D 4 HOH A 61 561 78 HOH HOH . D 4 HOH A 62 562 83 HOH HOH . D 4 HOH A 63 563 62 HOH HOH . D 4 HOH A 64 564 81 HOH HOH . D 4 HOH A 65 565 10 HOH HOH . D 4 HOH A 66 566 14 HOH HOH . D 4 HOH A 67 567 73 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 64 HOH HOH . D 4 HOH A 70 570 53 HOH HOH . D 4 HOH A 71 571 70 HOH HOH . D 4 HOH A 72 572 69 HOH HOH . D 4 HOH A 73 573 90 HOH HOH . D 4 HOH A 74 574 85 HOH HOH . D 4 HOH A 75 575 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 -13.831 -7.256 -20.571 1 27.86 ? CHA HEM 402 A 1 HETATM 2 C CHB HEM . . . C 3 -14.228 -2.819 -22.428 1 30.27 ? CHB HEM 402 A 1 HETATM 3 C CHC HEM . . . C 3 -18.833 -2.6 -20.92 1 28.03 ? CHC HEM 402 A 1 HETATM 4 C CHD HEM . . . C 3 -18.346 -6.903 -18.798 1 27.06 ? CHD HEM 402 A 1 HETATM 5 C C1A HEM . . . C 3 -13.552 -6.081 -21.236 1 27.07 ? C1A HEM 402 A 1 HETATM 6 C C2A HEM . . . C 3 -12.324 -5.754 -21.873 1 27.62 ? C2A HEM 402 A 1 HETATM 7 C C3A HEM . . . C 3 -12.456 -4.521 -22.378 1 27.85 ? C3A HEM 402 A 1 HETATM 8 C C4A HEM . . . C 3 -13.743 -4.059 -22.044 1 29.04 ? C4A HEM 402 A 1 HETATM 9 C CMA HEM . . . C 3 -11.431 -3.738 -23.138 1 28.16 ? CMA HEM 402 A 1 HETATM 10 C CAA HEM . . . C 3 -11.072 -6.589 -22.014 1 29.64 ? CAA HEM 402 A 1 HETATM 11 C CBA HEM . . . C 3 -9.936 -6.04 -21.147 1 31.96 ? CBA HEM 402 A 1 HETATM 12 C CGA HEM . . . C 3 -8.691 -6.906 -21.159 1 32.81 ? CGA HEM 402 A 1 HETATM 13 O O1A HEM . . . C 3 -7.784 -6.707 -20.301 1 34.09 ? O1A HEM 402 A 1 HETATM 14 O O2A HEM . . . C 3 -8.545 -7.817 -21.993 1 30.04 ? O2A HEM 402 A 1 HETATM 15 C C1B HEM . . . C 3 -15.543 -2.383 -22.183 1 28.83 ? C1B HEM 402 A 1 HETATM 16 C C2B HEM . . . C 3 -16.052 -1.129 -22.651 1 28.02 ? C2B HEM 402 A 1 HETATM 17 C C3B HEM . . . C 3 -17.36 -1.055 -22.238 1 29.25 ? C3B HEM 402 A 1 HETATM 18 C C4B HEM . . . C 3 -17.607 -2.311 -21.502 1 28.41 ? C4B HEM 402 A 1 HETATM 19 C CMB HEM . . . C 3 -15.327 -0.083 -23.45 1 26.38 ? CMB HEM 402 A 1 HETATM 20 C CAB HEM . . . C 3 -18.422 -0.038 -22.449 1 31.12 ? CAB HEM 402 A 1 HETATM 21 C CBB HEM . . . C 3 -18.399 1.003 -23.267 1 33.72 ? CBB HEM 402 A 1 HETATM 22 C C1C HEM . . . C 3 -19.123 -3.746 -20.192 1 28.65 ? C1C HEM 402 A 1 HETATM 23 C C2C HEM . . . C 3 -20.393 -4.039 -19.659 1 27.97 ? C2C HEM 402 A 1 HETATM 24 C C3C HEM . . . C 3 -20.276 -5.272 -19.048 1 29.63 ? C3C HEM 402 A 1 HETATM 25 C C4C HEM . . . C 3 -18.923 -5.737 -19.238 1 29.09 ? C4C HEM 402 A 1 HETATM 26 C CMC HEM . . . C 3 -21.654 -3.21 -19.774 1 26.3 ? CMC HEM 402 A 1 HETATM 27 C CAC HEM . . . C 3 -21.454 -5.884 -18.428 1 31.5 ? CAC HEM 402 A 1 HETATM 28 C CBC HEM . . . C 3 -21.593 -7.15 -18.148 1 35.4 ? CBC HEM 402 A 1 HETATM 29 C C1D HEM . . . C 3 -17.06 -7.296 -19.157 1 27.72 ? C1D HEM 402 A 1 HETATM 30 C C2D HEM . . . C 3 -16.531 -8.587 -18.716 1 27.98 ? C2D HEM 402 A 1 HETATM 31 C C3D HEM . . . C 3 -15.305 -8.674 -19.22 1 29.17 ? C3D HEM 402 A 1 HETATM 32 C C4D HEM . . . C 3 -15.067 -7.459 -19.96 1 27.41 ? C4D HEM 402 A 1 HETATM 33 C CMD HEM . . . C 3 -17.184 -9.651 -17.873 1 26.32 ? CMD HEM 402 A 1 HETATM 34 C CAD HEM . . . C 3 -14.366 -9.829 -19.014 1 31.57 ? CAD HEM 402 A 1 HETATM 35 C CBD HEM . . . C 3 -14.45 -10.763 -20.212 1 30.66 ? CBD HEM 402 A 1 HETATM 36 C CGD HEM . . . C 3 -13.453 -11.872 -19.975 1 30.79 ? CGD HEM 402 A 1 HETATM 37 O O1D HEM . . . C 3 -12.516 -11.729 -19.189 1 27.14 ? O1D HEM 402 A 1 HETATM 38 O O2D HEM . . . C 3 -13.574 -12.96 -20.563 1 30.42 ? O2D HEM 402 A 1 HETATM 39 N NA HEM . . . C 3 -14.405 -5.005 -21.289 1 27.89 ? NA HEM 402 A 1 HETATM 40 N NB HEM . . . C 3 -16.479 -3.014 -21.469 1 27.77 ? NB HEM 402 A 1 HETATM 41 N NC HEM . . . C 3 -18.246 -4.761 -19.918 1 27.59 ? NC HEM 402 A 1 HETATM 42 N ND HEM . . . C 3 -16.146 -6.642 -19.884 1 26.87 ? ND HEM 402 A 1 HETATM 43 FE FE HEM . . . C 3 -16.317 -4.933 -20.661 1 25.28 ? FE HEM 402 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #