data_5CJF # _model_server_result.job_id tGSy3LMXXdpc4nmJw138Aw _model_server_result.datetime_utc '2024-11-24 16:00:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5CJF # _exptl.entry_id 5CJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CJF _cell.length_a 88.495 _cell.length_b 88.495 _cell.length_c 108.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 306 NAG 2 n B NAG 2 B 2 NAG A 307 NAG 2 n B BMA 3 B 3 BMA A 308 BMA 2 n B MAN 4 B 4 MAN A 309 MAN 2 n B MAN 5 B 5 MAN A 310 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 23 1_555 A SG CYS 206 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 198 A ASN 195 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A ND1 HIS 120 A HIS 119 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 C ZN ZN . A ZN 301 1_555 D N2 520 . A 520 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CJF _atom_sites.fract_transf_matrix[1][1] 0.0113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 301 ZN ZN . D 4 520 A 1 302 302 520 520 . E 5 GOL A 1 303 303 GOL GOL . F 5 GOL A 1 304 304 GOL GOL . G 6 SO4 A 1 305 305 SO4 SO4 . H 7 HOH A 1 401 466 HOH HOH . H 7 HOH A 2 402 501 HOH HOH . H 7 HOH A 3 403 445 HOH HOH . H 7 HOH A 4 404 484 HOH HOH . H 7 HOH A 5 405 534 HOH HOH . H 7 HOH A 6 406 465 HOH HOH . H 7 HOH A 7 407 521 HOH HOH . H 7 HOH A 8 408 415 HOH HOH . H 7 HOH A 9 409 447 HOH HOH . H 7 HOH A 10 410 533 HOH HOH . H 7 HOH A 11 411 548 HOH HOH . H 7 HOH A 12 412 546 HOH HOH . H 7 HOH A 13 413 528 HOH HOH . H 7 HOH A 14 414 472 HOH HOH . H 7 HOH A 15 415 599 HOH HOH . H 7 HOH A 16 416 535 HOH HOH . H 7 HOH A 17 417 592 HOH HOH . H 7 HOH A 18 418 561 HOH HOH . H 7 HOH A 19 419 452 HOH HOH . H 7 HOH A 20 420 493 HOH HOH . H 7 HOH A 21 421 564 HOH HOH . H 7 HOH A 22 422 577 HOH HOH . H 7 HOH A 23 423 581 HOH HOH . H 7 HOH A 24 424 477 HOH HOH . H 7 HOH A 25 425 538 HOH HOH . H 7 HOH A 26 426 402 HOH HOH . H 7 HOH A 27 427 412 HOH HOH . H 7 HOH A 28 428 568 HOH HOH . H 7 HOH A 29 429 436 HOH HOH . H 7 HOH A 30 430 438 HOH HOH . H 7 HOH A 31 431 432 HOH HOH . H 7 HOH A 32 432 450 HOH HOH . H 7 HOH A 33 433 421 HOH HOH . H 7 HOH A 34 434 618 HOH HOH . H 7 HOH A 35 435 444 HOH HOH . H 7 HOH A 36 436 429 HOH HOH . H 7 HOH A 37 437 532 HOH HOH . H 7 HOH A 38 438 616 HOH HOH . H 7 HOH A 39 439 489 HOH HOH . H 7 HOH A 40 440 467 HOH HOH . H 7 HOH A 41 441 440 HOH HOH . H 7 HOH A 42 442 612 HOH HOH . H 7 HOH A 43 443 613 HOH HOH . H 7 HOH A 44 444 558 HOH HOH . H 7 HOH A 45 445 509 HOH HOH . H 7 HOH A 46 446 625 HOH HOH . H 7 HOH A 47 447 463 HOH HOH . H 7 HOH A 48 448 457 HOH HOH . H 7 HOH A 49 449 591 HOH HOH . H 7 HOH A 50 450 403 HOH HOH . H 7 HOH A 51 451 510 HOH HOH . H 7 HOH A 52 452 423 HOH HOH . H 7 HOH A 53 453 523 HOH HOH . H 7 HOH A 54 454 455 HOH HOH . H 7 HOH A 55 455 496 HOH HOH . H 7 HOH A 56 456 619 HOH HOH . H 7 HOH A 57 457 522 HOH HOH . H 7 HOH A 58 458 545 HOH HOH . H 7 HOH A 59 459 590 HOH HOH . H 7 HOH A 60 460 557 HOH HOH . H 7 HOH A 61 461 464 HOH HOH . H 7 HOH A 62 462 408 HOH HOH . H 7 HOH A 63 463 539 HOH HOH . H 7 HOH A 64 464 416 HOH HOH . H 7 HOH A 65 465 506 HOH HOH . H 7 HOH A 66 466 405 HOH HOH . H 7 HOH A 67 467 583 HOH HOH . H 7 HOH A 68 468 404 HOH HOH . H 7 HOH A 69 469 434 HOH HOH . H 7 HOH A 70 470 527 HOH HOH . H 7 HOH A 71 471 414 HOH HOH . H 7 HOH A 72 472 411 HOH HOH . H 7 HOH A 73 473 513 HOH HOH . H 7 HOH A 74 474 410 HOH HOH . H 7 HOH A 75 475 553 HOH HOH . H 7 HOH A 76 476 500 HOH HOH . H 7 HOH A 77 477 610 HOH HOH . H 7 HOH A 78 478 424 HOH HOH . H 7 HOH A 79 479 551 HOH HOH . H 7 HOH A 80 480 441 HOH HOH . H 7 HOH A 81 481 604 HOH HOH . H 7 HOH A 82 482 598 HOH HOH . H 7 HOH A 83 483 486 HOH HOH . H 7 HOH A 84 484 483 HOH HOH . H 7 HOH A 85 485 547 HOH HOH . H 7 HOH A 86 486 596 HOH HOH . H 7 HOH A 87 487 585 HOH HOH . H 7 HOH A 88 488 497 HOH HOH . H 7 HOH A 89 489 520 HOH HOH . H 7 HOH A 90 490 462 HOH HOH . H 7 HOH A 91 491 502 HOH HOH . H 7 HOH A 92 492 422 HOH HOH . H 7 HOH A 93 493 571 HOH HOH . H 7 HOH A 94 494 435 HOH HOH . H 7 HOH A 95 495 529 HOH HOH . H 7 HOH A 96 496 628 HOH HOH . H 7 HOH A 97 497 495 HOH HOH . H 7 HOH A 98 498 580 HOH HOH . H 7 HOH A 99 499 431 HOH HOH . H 7 HOH A 100 500 626 HOH HOH . H 7 HOH A 101 501 595 HOH HOH . H 7 HOH A 102 502 582 HOH HOH . H 7 HOH A 103 503 478 HOH HOH . H 7 HOH A 104 504 459 HOH HOH . H 7 HOH A 105 505 567 HOH HOH . H 7 HOH A 106 506 456 HOH HOH . H 7 HOH A 107 507 437 HOH HOH . H 7 HOH A 108 508 559 HOH HOH . H 7 HOH A 109 509 426 HOH HOH . H 7 HOH A 110 510 602 HOH HOH . H 7 HOH A 111 511 401 HOH HOH . H 7 HOH A 112 512 563 HOH HOH . H 7 HOH A 113 513 430 HOH HOH . H 7 HOH A 114 514 476 HOH HOH . H 7 HOH A 115 515 428 HOH HOH . H 7 HOH A 116 516 413 HOH HOH . H 7 HOH A 117 517 623 HOH HOH . H 7 HOH A 118 518 418 HOH HOH . H 7 HOH A 119 519 487 HOH HOH . H 7 HOH A 120 520 480 HOH HOH . H 7 HOH A 121 521 475 HOH HOH . H 7 HOH A 122 522 499 HOH HOH . H 7 HOH A 123 523 425 HOH HOH . H 7 HOH A 124 524 449 HOH HOH . H 7 HOH A 125 525 556 HOH HOH . H 7 HOH A 126 526 515 HOH HOH . H 7 HOH A 127 527 485 HOH HOH . H 7 HOH A 128 528 536 HOH HOH . H 7 HOH A 129 529 406 HOH HOH . H 7 HOH A 130 530 470 HOH HOH . H 7 HOH A 131 531 474 HOH HOH . H 7 HOH A 132 532 446 HOH HOH . H 7 HOH A 133 533 419 HOH HOH . H 7 HOH A 134 534 507 HOH HOH . H 7 HOH A 135 535 550 HOH HOH . H 7 HOH A 136 536 479 HOH HOH . H 7 HOH A 137 537 562 HOH HOH . H 7 HOH A 138 538 504 HOH HOH . H 7 HOH A 139 539 481 HOH HOH . H 7 HOH A 140 540 574 HOH HOH . H 7 HOH A 141 541 572 HOH HOH . H 7 HOH A 142 542 451 HOH HOH . H 7 HOH A 143 543 473 HOH HOH . H 7 HOH A 144 544 555 HOH HOH . H 7 HOH A 145 545 420 HOH HOH . H 7 HOH A 146 546 460 HOH HOH . H 7 HOH A 147 547 409 HOH HOH . H 7 HOH A 148 548 488 HOH HOH . H 7 HOH A 149 549 511 HOH HOH . H 7 HOH A 150 550 586 HOH HOH . H 7 HOH A 151 551 537 HOH HOH . H 7 HOH A 152 552 471 HOH HOH . H 7 HOH A 153 553 490 HOH HOH . H 7 HOH A 154 554 531 HOH HOH . H 7 HOH A 155 555 569 HOH HOH . H 7 HOH A 156 556 427 HOH HOH . H 7 HOH A 157 557 494 HOH HOH . H 7 HOH A 158 558 498 HOH HOH . H 7 HOH A 159 559 461 HOH HOH . H 7 HOH A 160 560 519 HOH HOH . H 7 HOH A 161 561 503 HOH HOH . H 7 HOH A 162 562 554 HOH HOH . H 7 HOH A 163 563 492 HOH HOH . H 7 HOH A 164 564 530 HOH HOH . H 7 HOH A 165 565 541 HOH HOH . H 7 HOH A 166 566 525 HOH HOH . H 7 HOH A 167 567 433 HOH HOH . H 7 HOH A 168 568 407 HOH HOH . H 7 HOH A 169 569 543 HOH HOH . H 7 HOH A 170 570 578 HOH HOH . H 7 HOH A 171 571 417 HOH HOH . H 7 HOH A 172 572 579 HOH HOH . H 7 HOH A 173 573 594 HOH HOH . H 7 HOH A 174 574 609 HOH HOH . H 7 HOH A 175 575 448 HOH HOH . H 7 HOH A 176 576 560 HOH HOH . H 7 HOH A 177 577 624 HOH HOH . H 7 HOH A 178 578 589 HOH HOH . H 7 HOH A 179 579 453 HOH HOH . H 7 HOH A 180 580 469 HOH HOH . H 7 HOH A 181 581 611 HOH HOH . H 7 HOH A 182 582 439 HOH HOH . H 7 HOH A 183 583 620 HOH HOH . H 7 HOH A 184 584 593 HOH HOH . H 7 HOH A 185 585 454 HOH HOH . H 7 HOH A 186 586 540 HOH HOH . H 7 HOH A 187 587 622 HOH HOH . H 7 HOH A 188 588 552 HOH HOH . H 7 HOH A 189 589 600 HOH HOH . H 7 HOH A 190 590 482 HOH HOH . H 7 HOH A 191 591 584 HOH HOH . H 7 HOH A 192 592 601 HOH HOH . H 7 HOH A 193 593 512 HOH HOH . H 7 HOH A 194 594 526 HOH HOH . H 7 HOH A 195 595 587 HOH HOH . H 7 HOH A 196 596 615 HOH HOH . H 7 HOH A 197 597 524 HOH HOH . H 7 HOH A 198 598 517 HOH HOH . H 7 HOH A 199 599 549 HOH HOH . H 7 HOH A 200 600 565 HOH HOH . H 7 HOH A 201 601 606 HOH HOH . H 7 HOH A 202 602 576 HOH HOH . H 7 HOH A 203 603 468 HOH HOH . H 7 HOH A 204 604 608 HOH HOH . H 7 HOH A 205 605 605 HOH HOH . H 7 HOH A 206 606 603 HOH HOH . H 7 HOH A 207 607 518 HOH HOH . H 7 HOH A 208 608 588 HOH HOH . H 7 HOH A 209 609 516 HOH HOH . H 7 HOH A 210 610 573 HOH HOH . H 7 HOH A 211 611 514 HOH HOH . H 7 HOH A 212 612 544 HOH HOH . H 7 HOH A 213 613 617 HOH HOH . H 7 HOH A 214 614 491 HOH HOH . H 7 HOH A 215 615 566 HOH HOH . H 7 HOH A 216 616 597 HOH HOH . H 7 HOH A 217 617 542 HOH HOH . H 7 HOH A 218 618 627 HOH HOH . H 7 HOH A 219 619 508 HOH HOH . H 7 HOH A 220 620 621 HOH HOH . H 7 HOH A 221 621 607 HOH HOH . H 7 HOH A 222 622 614 HOH HOH . H 7 HOH A 223 623 458 HOH HOH . H 7 HOH A 224 624 505 HOH HOH . H 7 HOH A 225 625 443 HOH HOH . H 7 HOH A 226 626 575 HOH HOH . H 7 HOH A 227 627 442 HOH HOH . H 7 HOH A 228 628 570 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 69.434 _atom_site.Cartn_y 35.187 _atom_site.Cartn_z 6.068 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #