data_5CJP # _model_server_result.job_id INuExQmosb507ya3GSIKgA _model_server_result.datetime_utc '2025-02-25 09:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 5CJP # _exptl.entry_id 5CJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CJP _cell.length_a 101.633 _cell.length_b 120.169 _cell.length_c 157.079 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 17 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 G O2G GTP . A GTP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 G O2B GTP . A GTP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 B OG1 THR 19 B THR 17 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 I O3G GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 I O2B GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc7 C OG1 THR 19 C THR 17 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 C OG1 THR 37 C THR 35 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc9 K O1G GTP . C GTP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 K O1B GTP . C GTP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc11 L MG MG . C MG 202 1_555 Q O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc12 D OG1 THR 19 D THR 17 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc13 D OG1 THR 37 D THR 35 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc14 D OD2 ASP 59 D ASP 57 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc15 D O THR 60 D THR 58 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc16 M O1G GTP . D GTP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc17 M O1B GTP . D GTP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CJP _atom_sites.fract_transf_matrix[1][1] 0.009839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP A 1 201 198 GTP GTP . H 4 MG A 1 202 201 MG MG . I 3 GTP B 1 201 198 GTP GTP . J 4 MG B 1 202 202 MG MG . K 3 GTP C 1 201 198 GTP GTP . L 4 MG C 1 202 203 MG MG . M 3 GTP D 1 201 198 GTP GTP . N 4 MG D 1 202 204 MG MG . O 5 HOH A 1 301 38 HOH WAT . O 5 HOH A 2 302 82 HOH WAT . O 5 HOH A 3 303 5 HOH WAT . O 5 HOH A 4 304 26 HOH WAT . O 5 HOH A 5 305 43 HOH WAT . O 5 HOH A 6 306 61 HOH WAT . O 5 HOH A 7 307 55 HOH WAT . O 5 HOH A 8 308 54 HOH WAT . O 5 HOH A 9 309 8 HOH WAT . O 5 HOH A 10 310 80 HOH WAT . O 5 HOH A 11 311 101 HOH WAT . O 5 HOH A 12 312 118 HOH WAT . O 5 HOH A 13 313 22 HOH WAT . O 5 HOH A 14 314 13 HOH WAT . O 5 HOH A 15 315 44 HOH WAT . O 5 HOH A 16 316 3 HOH WAT . O 5 HOH A 17 317 58 HOH WAT . O 5 HOH A 18 318 33 HOH WAT . O 5 HOH A 19 319 20 HOH WAT . O 5 HOH A 20 320 69 HOH WAT . O 5 HOH A 21 321 42 HOH WAT . O 5 HOH A 22 322 117 HOH WAT . O 5 HOH A 23 323 50 HOH WAT . O 5 HOH A 24 324 67 HOH WAT . O 5 HOH A 25 325 36 HOH WAT . O 5 HOH A 26 326 4 HOH WAT . O 5 HOH A 27 327 79 HOH WAT . O 5 HOH A 28 328 114 HOH WAT . O 5 HOH A 29 329 83 HOH WAT . O 5 HOH A 30 330 113 HOH WAT . P 5 HOH B 1 301 2 HOH WAT . P 5 HOH B 2 302 88 HOH WAT . P 5 HOH B 3 303 87 HOH WAT . P 5 HOH B 4 304 76 HOH WAT . P 5 HOH B 5 305 115 HOH WAT . P 5 HOH B 6 306 62 HOH WAT . P 5 HOH B 7 307 111 HOH WAT . P 5 HOH B 8 308 103 HOH WAT . P 5 HOH B 9 309 19 HOH WAT . P 5 HOH B 10 310 27 HOH WAT . P 5 HOH B 11 311 18 HOH WAT . P 5 HOH B 12 312 116 HOH WAT . P 5 HOH B 13 313 35 HOH WAT . P 5 HOH B 14 314 51 HOH WAT . P 5 HOH B 15 315 105 HOH WAT . P 5 HOH B 16 316 100 HOH WAT . P 5 HOH B 17 317 64 HOH WAT . P 5 HOH B 18 318 108 HOH WAT . P 5 HOH B 19 319 74 HOH WAT . P 5 HOH B 20 320 75 HOH WAT . P 5 HOH B 21 321 112 HOH WAT . Q 5 HOH C 1 301 53 HOH WAT . Q 5 HOH C 2 302 28 HOH WAT . Q 5 HOH C 3 303 96 HOH WAT . Q 5 HOH C 4 304 91 HOH WAT . Q 5 HOH C 5 305 85 HOH WAT . Q 5 HOH C 6 306 102 HOH WAT . Q 5 HOH C 7 307 1 HOH WAT . Q 5 HOH C 8 308 70 HOH WAT . Q 5 HOH C 9 309 10 HOH WAT . Q 5 HOH C 10 310 86 HOH WAT . R 5 HOH D 1 301 39 HOH WAT . R 5 HOH D 2 302 98 HOH WAT . R 5 HOH D 3 303 21 HOH WAT . S 5 HOH E 1 1301 95 HOH WAT . S 5 HOH E 2 1302 6 HOH WAT . S 5 HOH E 3 1303 110 HOH WAT . S 5 HOH E 4 1304 47 HOH WAT . S 5 HOH E 5 1305 104 HOH WAT . S 5 HOH E 6 1306 77 HOH WAT . S 5 HOH E 7 1307 68 HOH WAT . S 5 HOH E 8 1308 30 HOH WAT . S 5 HOH E 9 1309 57 HOH WAT . S 5 HOH E 10 1310 48 HOH WAT . S 5 HOH E 11 1311 90 HOH WAT . S 5 HOH E 12 1312 107 HOH WAT . S 5 HOH E 13 1313 15 HOH WAT . S 5 HOH E 14 1314 45 HOH WAT . S 5 HOH E 15 1315 78 HOH WAT . S 5 HOH E 16 1316 31 HOH WAT . S 5 HOH E 17 1317 37 HOH WAT . S 5 HOH E 18 1318 56 HOH WAT . S 5 HOH E 19 1319 11 HOH WAT . S 5 HOH E 20 1320 12 HOH WAT . S 5 HOH E 21 1321 23 HOH WAT . S 5 HOH E 22 1322 41 HOH WAT . S 5 HOH E 23 1323 93 HOH WAT . S 5 HOH E 24 1324 16 HOH WAT . S 5 HOH E 25 1325 65 HOH WAT . S 5 HOH E 26 1326 49 HOH WAT . S 5 HOH E 27 1327 29 HOH WAT . S 5 HOH E 28 1328 71 HOH WAT . S 5 HOH E 29 1329 94 HOH WAT . S 5 HOH E 30 1330 73 HOH WAT . S 5 HOH E 31 1331 81 HOH WAT . S 5 HOH E 32 1332 72 HOH WAT . T 5 HOH F 1 1301 92 HOH WAT . T 5 HOH F 2 1302 89 HOH WAT . T 5 HOH F 3 1303 99 HOH WAT . T 5 HOH F 4 1304 97 HOH WAT . T 5 HOH F 5 1305 9 HOH WAT . T 5 HOH F 6 1306 32 HOH WAT . T 5 HOH F 7 1307 17 HOH WAT . T 5 HOH F 8 1308 25 HOH WAT . T 5 HOH F 9 1309 46 HOH WAT . T 5 HOH F 10 1310 24 HOH WAT . T 5 HOH F 11 1311 60 HOH WAT . T 5 HOH F 12 1312 7 HOH WAT . T 5 HOH F 13 1313 106 HOH WAT . T 5 HOH F 14 1314 14 HOH WAT . T 5 HOH F 15 1315 66 HOH WAT . T 5 HOH F 16 1316 34 HOH WAT . T 5 HOH F 17 1317 40 HOH WAT . T 5 HOH F 18 1318 63 HOH WAT . T 5 HOH F 19 1319 59 HOH WAT . T 5 HOH F 20 1320 52 HOH WAT . T 5 HOH F 21 1321 109 HOH WAT . T 5 HOH F 22 1322 84 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -33.723 _atom_site.Cartn_y 10.22 _atom_site.Cartn_z -7.93 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 840 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #