data_5CJT
#
_model_server_result.job_id            Nbew8uQ5watJoRohSSLy2A 
_model_server_result.datetime_utc      '2024-11-18 00:38:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cjt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1102}' 
#
_entry.id    5CJT 
#
_exptl.entry_id    5CJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOBUTYRYL-COENZYME A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CJT 
_cell.length_a            316.84 
_cell.length_b            316.84 
_cell.length_c            342.65 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc5 A OD1 ASP 282 A ASP 262 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc7 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc9 F O1B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc16 B OD1 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc17 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc19 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc20 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
metalc ? metalc21 K O1B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc22 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                CO6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOBUTYRYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     IB-CO6 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A CO6 sing 293 n y 
N1A C6A CO6 doub 294 n y 
C2A N3A CO6 doub 295 n y 
C2A H2 CO6 sing 296 n n 
N3A C4A CO6 sing 297 n y 
C4A C5A CO6 doub 298 n y 
C4A N9A CO6 sing 299 n y 
C5A C6A CO6 sing 300 n y 
C5A N7A CO6 sing 301 n y 
C6A N6A CO6 sing 302 n n 
N6A HN61 CO6 sing 303 n n 
N6A HN62 CO6 sing 304 n n 
N7A C8A CO6 doub 305 n y 
C8A N9A CO6 sing 306 n y 
C8A H8 CO6 sing 307 n n 
N9A C1B CO6 sing 308 n n 
C1B C2B CO6 sing 309 n n 
C1B O4B CO6 sing 310 n n 
C1B H1' CO6 sing 311 n n 
C2B C3B CO6 sing 312 n n 
C2B O2B CO6 sing 313 n n 
C2B H2' CO6 sing 314 n n 
O2B H1 CO6 sing 315 n n 
C3B C4B CO6 sing 316 n n 
C3B O3B CO6 sing 317 n n 
C3B H3' CO6 sing 318 n n 
O3B P3B CO6 sing 319 n n 
P3B O7A CO6 doub 320 n n 
P3B O8A CO6 sing 321 n n 
P3B O9A CO6 sing 322 n n 
O8A HO8 CO6 sing 323 n n 
O9A HO9 CO6 sing 324 n n 
C4B C5B CO6 sing 325 n n 
C4B O4B CO6 sing 326 n n 
C4B H4' CO6 sing 327 n n 
C5B O5B CO6 sing 328 n n 
C5B "H5'1" CO6 sing 329 n n 
C5B "H5'2" CO6 sing 330 n n 
O5B P1A CO6 sing 331 n n 
P1A O1A CO6 doub 332 n n 
P1A O2A CO6 sing 333 n n 
P1A O3A CO6 sing 334 n n 
O2A HO2 CO6 sing 335 n n 
O3A P2A CO6 sing 336 n n 
P2A O4A CO6 doub 337 n n 
P2A O5A CO6 sing 338 n n 
P2A O6A CO6 sing 339 n n 
O5A HO5 CO6 sing 340 n n 
O6A CCP CO6 sing 341 n n 
CBP CAP CO6 sing 342 n n 
CBP CCP CO6 sing 343 n n 
CBP CDP CO6 sing 344 n n 
CBP CEP CO6 sing 345 n n 
CCP H121 CO6 sing 346 n n 
CCP H122 CO6 sing 347 n n 
CDP H131 CO6 sing 348 n n 
CDP H132 CO6 sing 349 n n 
CDP H133 CO6 sing 350 n n 
CEP H141 CO6 sing 351 n n 
CEP H142 CO6 sing 352 n n 
CEP H143 CO6 sing 353 n n 
CAP C9P CO6 sing 354 n n 
CAP OAP CO6 sing 355 n n 
CAP H10 CO6 sing 356 n n 
OAP H3 CO6 sing 357 n n 
C9P O9P CO6 doub 358 n n 
C9P N8P CO6 sing 359 n n 
N8P C7P CO6 sing 360 n n 
N8P HN8 CO6 sing 361 n n 
C7P C6P CO6 sing 362 n n 
C7P H71 CO6 sing 363 n n 
C7P H72 CO6 sing 364 n n 
C6P C5P CO6 sing 365 n n 
C6P H61 CO6 sing 366 n n 
C6P H62 CO6 sing 367 n n 
C5P N4P CO6 sing 368 n n 
C5P O5P CO6 doub 369 n n 
N4P C3P CO6 sing 370 n n 
N4P HN4 CO6 sing 371 n n 
C3P C2P CO6 sing 372 n n 
C3P H31 CO6 sing 373 n n 
C3P H32 CO6 sing 374 n n 
C2P S1P CO6 sing 375 n n 
C2P H21 CO6 sing 376 n n 
C2P H22 CO6 sing 377 n n 
S1P C1 CO6 sing 378 n n 
O1 C1 CO6 doub 379 n n 
C1 C3 CO6 sing 380 n n 
C2 C3 CO6 sing 381 n n 
C2 H11 CO6 sing 382 n n 
C2 H12 CO6 sing 383 n n 
C2 H13 CO6 sing 384 n n 
C3 C4 CO6 sing 385 n n 
C3 H4 CO6 sing 386 n n 
C4 H41 CO6 sing 387 n n 
C4 H42 CO6 sing 388 n n 
C4 H43 CO6 sing 389 n n 
#
_atom_sites.entry_id                     5CJT 
_atom_sites.fract_transf_matrix[1][1]    0.003156 
_atom_sites.fract_transf_matrix[1][2]    0.001822 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B12 A 1 1101 1198 B12 B12 . 
D 3 5AD A 1 1102 1199 5AD 5AD . 
E 4 CO6 A 1 1103 1211 CO6 CO6 . 
F 5 GDP A 1 1104 1200 GDP GDP . 
G 6 MG A 1 1105 1 MG MG . 
H 6 MG A 1 1106 3 MG MG . 
I 2 B12 B 1 1101 1198 B12 B12 . 
J 4 CO6 B 1 1102 1212 CO6 CO6 . 
K 5 GDP B 1 1103 1201 GDP GDP . 
L 6 MG B 1 1104 2 MG MG . 
M 6 MG B 1 1105 4 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A CO6 . . . J 4 -242.265 -68.607 -26.437 1 119.37 ? N1A CO6 1102 B 1 
HETATM 2 C C2A CO6 . . . J 4 -243.134 -67.657 -26.798 1 121.3 ? C2A CO6 1102 B 1 
HETATM 3 N N3A CO6 . . . J 4 -244.445 -67.583 -26.554 1 123.82 ? N3A CO6 1102 B 1 
HETATM 4 C C4A CO6 . . . J 4 -244.863 -68.641 -25.849 1 127.21 ? C4A CO6 1102 B 1 
HETATM 5 C C5A CO6 . . . J 4 -244.087 -69.701 -25.408 1 124.05 ? C5A CO6 1102 B 1 
HETATM 6 C C6A CO6 . . . J 4 -242.717 -69.664 -25.727 1 119.13 ? C6A CO6 1102 B 1 
HETATM 7 N N6A CO6 . . . J 4 -241.843 -70.609 -25.367 1 116.16 ? N6A CO6 1102 B 1 
HETATM 8 N N7A CO6 . . . J 4 -244.86 -70.617 -24.709 1 127.3 ? N7A CO6 1102 B 1 
HETATM 9 C C8A CO6 . . . J 4 -246.062 -70.096 -24.741 1 131.29 ? C8A CO6 1102 B 1 
HETATM 10 N N9A CO6 . . . J 4 -246.138 -68.902 -25.41 1 133.43 ? N9A CO6 1102 B 1 
HETATM 11 C C1B CO6 . . . J 4 -247.325 -68.073 -25.596 1 139.28 ? C1B CO6 1102 B 1 
HETATM 12 C C2B CO6 . . . J 4 -248.525 -68.813 -26.184 1 141.77 ? C2B CO6 1102 B 1 
HETATM 13 O O2B CO6 . . . J 4 -248.48 -68.812 -27.606 1 142.39 ? O2B CO6 1102 B 1 
HETATM 14 C C3B CO6 . . . J 4 -249.664 -67.933 -25.674 1 144.4 ? C3B CO6 1102 B 1 
HETATM 15 O O3B CO6 . . . J 4 -249.797 -66.783 -26.536 1 146.84 ? O3B CO6 1102 B 1 
HETATM 16 P P3B CO6 . . . J 4 -251.018 -66.413 -27.521 1 164.97 ? P3B CO6 1102 B 1 
HETATM 17 O O7A CO6 . . . J 4 -250.549 -65.507 -28.617 1 164.8 ? O7A CO6 1102 B 1 
HETATM 18 O O8A CO6 . . . J 4 -252.092 -65.768 -26.64 1 164.88 ? O8A CO6 1102 B 1 
HETATM 19 O O9A CO6 . . . J 4 -251.557 -67.746 -28.047 1 164.07 ? O9A CO6 1102 B 1 
HETATM 20 C C4B CO6 . . . J 4 -249.182 -67.505 -24.286 1 143.71 ? C4B CO6 1102 B 1 
HETATM 21 O O4B CO6 . . . J 4 -247.739 -67.594 -24.33 1 141.98 ? O4B CO6 1102 B 1 
HETATM 22 C C5B CO6 . . . J 4 -249.709 -68.318 -23.129 1 143.59 ? C5B CO6 1102 B 1 
HETATM 23 O O5B CO6 . . . J 4 -249.194 -69.664 -23.208 1 143.88 ? O5B CO6 1102 B 1 
HETATM 24 P P1A CO6 . . . J 4 -250.012 -71.021 -23.198 1 191.66 ? P1A CO6 1102 B 1 
HETATM 25 O O1A CO6 . . . J 4 -249.615 -71.939 -22.104 1 191.87 ? O1A CO6 1102 B 1 
HETATM 26 O O2A CO6 . . . J 4 -249.8 -71.715 -24.543 1 189.5 ? O2A CO6 1102 B 1 
HETATM 27 O O3A CO6 . . . J 4 -251.561 -70.666 -23.068 1 170.5 ? O3A CO6 1102 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#