data_5CJT # _model_server_result.job_id MF8P58MoLpELi5EsTbH6-g _model_server_result.datetime_utc '2025-06-24 16:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 5CJT # _exptl.entry_id 5CJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 837.624 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOBUTYRYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CJT _cell.length_a 316.84 _cell.length_b 316.84 _cell.length_c 342.65 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 A OD1 ASP 282 A ASP 262 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc7 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 F O1B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc16 B OD1 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc17 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc19 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc20 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc21 K O1B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc22 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C25 H42 N7 O17 P3 S' _chem_comp.formula_weight 837.624 _chem_comp.id CO6 _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOBUTYRYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms IB-CO6 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CO6 sing 293 n y N1A C6A CO6 doub 294 n y C2A N3A CO6 doub 295 n y C2A H2 CO6 sing 296 n n N3A C4A CO6 sing 297 n y C4A C5A CO6 doub 298 n y C4A N9A CO6 sing 299 n y C5A C6A CO6 sing 300 n y C5A N7A CO6 sing 301 n y C6A N6A CO6 sing 302 n n N6A HN61 CO6 sing 303 n n N6A HN62 CO6 sing 304 n n N7A C8A CO6 doub 305 n y C8A N9A CO6 sing 306 n y C8A H8 CO6 sing 307 n n N9A C1B CO6 sing 308 n n C1B C2B CO6 sing 309 n n C1B O4B CO6 sing 310 n n C1B H1' CO6 sing 311 n n C2B C3B CO6 sing 312 n n C2B O2B CO6 sing 313 n n C2B H2' CO6 sing 314 n n O2B H1 CO6 sing 315 n n C3B C4B CO6 sing 316 n n C3B O3B CO6 sing 317 n n C3B H3' CO6 sing 318 n n O3B P3B CO6 sing 319 n n P3B O7A CO6 doub 320 n n P3B O8A CO6 sing 321 n n P3B O9A CO6 sing 322 n n O8A HO8 CO6 sing 323 n n O9A HO9 CO6 sing 324 n n C4B C5B CO6 sing 325 n n C4B O4B CO6 sing 326 n n C4B H4' CO6 sing 327 n n C5B O5B CO6 sing 328 n n C5B "H5'1" CO6 sing 329 n n C5B "H5'2" CO6 sing 330 n n O5B P1A CO6 sing 331 n n P1A O1A CO6 doub 332 n n P1A O2A CO6 sing 333 n n P1A O3A CO6 sing 334 n n O2A HO2 CO6 sing 335 n n O3A P2A CO6 sing 336 n n P2A O4A CO6 doub 337 n n P2A O5A CO6 sing 338 n n P2A O6A CO6 sing 339 n n O5A HO5 CO6 sing 340 n n O6A CCP CO6 sing 341 n n CBP CAP CO6 sing 342 n n CBP CCP CO6 sing 343 n n CBP CDP CO6 sing 344 n n CBP CEP CO6 sing 345 n n CCP H121 CO6 sing 346 n n CCP H122 CO6 sing 347 n n CDP H131 CO6 sing 348 n n CDP H132 CO6 sing 349 n n CDP H133 CO6 sing 350 n n CEP H141 CO6 sing 351 n n CEP H142 CO6 sing 352 n n CEP H143 CO6 sing 353 n n CAP C9P CO6 sing 354 n n CAP OAP CO6 sing 355 n n CAP H10 CO6 sing 356 n n OAP H3 CO6 sing 357 n n C9P O9P CO6 doub 358 n n C9P N8P CO6 sing 359 n n N8P C7P CO6 sing 360 n n N8P HN8 CO6 sing 361 n n C7P C6P CO6 sing 362 n n C7P H71 CO6 sing 363 n n C7P H72 CO6 sing 364 n n C6P C5P CO6 sing 365 n n C6P H61 CO6 sing 366 n n C6P H62 CO6 sing 367 n n C5P N4P CO6 sing 368 n n C5P O5P CO6 doub 369 n n N4P C3P CO6 sing 370 n n N4P HN4 CO6 sing 371 n n C3P C2P CO6 sing 372 n n C3P H31 CO6 sing 373 n n C3P H32 CO6 sing 374 n n C2P S1P CO6 sing 375 n n C2P H21 CO6 sing 376 n n C2P H22 CO6 sing 377 n n S1P C1 CO6 sing 378 n n O1 C1 CO6 doub 379 n n C1 C3 CO6 sing 380 n n C2 C3 CO6 sing 381 n n C2 H11 CO6 sing 382 n n C2 H12 CO6 sing 383 n n C2 H13 CO6 sing 384 n n C3 C4 CO6 sing 385 n n C3 H4 CO6 sing 386 n n C4 H41 CO6 sing 387 n n C4 H42 CO6 sing 388 n n C4 H43 CO6 sing 389 n n # _atom_sites.entry_id 5CJT _atom_sites.fract_transf_matrix[1][1] 0.003156 _atom_sites.fract_transf_matrix[1][2] 0.001822 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B12 A 1 1101 1198 B12 B12 . D 3 5AD A 1 1102 1199 5AD 5AD . E 4 CO6 A 1 1103 1211 CO6 CO6 . F 5 GDP A 1 1104 1200 GDP GDP . G 6 MG A 1 1105 1 MG MG . H 6 MG A 1 1106 3 MG MG . I 2 B12 B 1 1101 1198 B12 B12 . J 4 CO6 B 1 1102 1212 CO6 CO6 . K 5 GDP B 1 1103 1201 GDP GDP . L 6 MG B 1 1104 2 MG MG . M 6 MG B 1 1105 4 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CO6 . . . E 4 -213.144 -101.796 -37.523 1 97.16 ? N1A CO6 1103 A 1 HETATM 2 C C2A CO6 . . . E 4 -212.139 -102.469 -38.091 1 99.34 ? C2A CO6 1103 A 1 HETATM 3 N N3A CO6 . . . E 4 -211.184 -103.201 -37.511 1 101.37 ? N3A CO6 1103 A 1 HETATM 4 C C4A CO6 . . . E 4 -211.326 -103.205 -36.182 1 103.6 ? C4A CO6 1103 A 1 HETATM 5 C C5A CO6 . . . E 4 -212.308 -102.556 -35.449 1 101.9 ? C5A CO6 1103 A 1 HETATM 6 C C6A CO6 . . . E 4 -213.262 -101.82 -36.177 1 98.49 ? C6A CO6 1103 A 1 HETATM 7 N N6A CO6 . . . E 4 -214.276 -101.156 -35.614 1 97.44 ? N6A CO6 1103 A 1 HETATM 8 N N7A CO6 . . . E 4 -212.143 -102.785 -34.093 1 104.61 ? N7A CO6 1103 A 1 HETATM 9 C C8A CO6 . . . E 4 -211.085 -103.558 -34.036 1 106.66 ? C8A CO6 1103 A 1 HETATM 10 N N9A CO6 . . . E 4 -210.543 -103.856 -35.257 1 108.18 ? N9A CO6 1103 A 1 HETATM 11 C C1B CO6 . . . E 4 -209.395 -104.721 -35.519 1 113.18 ? C1B CO6 1103 A 1 HETATM 12 C C2B CO6 . . . E 4 -208.099 -103.977 -35.853 1 114.45 ? C2B CO6 1103 A 1 HETATM 13 O O2B CO6 . . . E 4 -207.26 -104.782 -36.675 1 117.34 ? O2B CO6 1103 A 1 HETATM 14 C C3B CO6 . . . E 4 -207.493 -103.825 -34.462 1 111.42 ? C3B CO6 1103 A 1 HETATM 15 O O3B CO6 . . . E 4 -206.059 -103.721 -34.58 1 109.84 ? O3B CO6 1103 A 1 HETATM 16 P P3B CO6 . . . E 4 -205.217 -102.692 -35.476 1 153.68 ? P3B CO6 1103 A 1 HETATM 17 O O7A CO6 . . . E 4 -206.004 -101.442 -35.721 1 152.36 ? O7A CO6 1103 A 1 HETATM 18 O O8A CO6 . . . E 4 -204.877 -103.446 -36.764 1 154.8 ? O8A CO6 1103 A 1 HETATM 19 O O9A CO6 . . . E 4 -203.921 -102.433 -34.705 1 153.66 ? O9A CO6 1103 A 1 HETATM 20 C C4B CO6 . . . E 4 -207.869 -105.138 -33.785 1 112.85 ? C4B CO6 1103 A 1 HETATM 21 O O4B CO6 . . . E 4 -209.146 -105.495 -34.36 1 113.35 ? O4B CO6 1103 A 1 HETATM 22 C C5B CO6 . . . E 4 -207.99 -105.077 -32.283 1 112.79 ? C5B CO6 1103 A 1 HETATM 23 O O5B CO6 . . . E 4 -208.925 -104.038 -31.919 1 111.31 ? O5B CO6 1103 A 1 HETATM 24 P P1A CO6 . . . E 4 -208.828 -103.049 -30.685 1 98.22 ? P1A CO6 1103 A 1 HETATM 25 O O1A CO6 . . . E 4 -207.727 -103.388 -29.752 1 101.41 ? O1A CO6 1103 A 1 HETATM 26 O O2A CO6 . . . E 4 -208.629 -101.632 -31.217 1 96.14 ? O2A CO6 1103 A 1 HETATM 27 O O3A CO6 . . . E 4 -210.215 -103.087 -29.903 1 138.83 ? O3A CO6 1103 A 1 HETATM 28 P P2A CO6 . . . E 4 -210.575 -103.465 -28.397 1 110.2 ? P2A CO6 1103 A 1 HETATM 29 O O4A CO6 . . . E 4 -211.959 -103.986 -28.328 1 111.93 ? O4A CO6 1103 A 1 HETATM 30 O O5A CO6 . . . E 4 -209.591 -104.54 -27.932 1 109.33 ? O5A CO6 1103 A 1 HETATM 31 O O6A CO6 . . . E 4 -210.342 -102.181 -27.505 1 75.41 ? O6A CO6 1103 A 1 HETATM 32 C CBP CO6 . . . E 4 -209.032 -100.6 -26.203 1 83.25 ? CBP CO6 1103 A 1 HETATM 33 C CCP CO6 . . . E 4 -209.248 -102.064 -26.585 1 79.79 ? CCP CO6 1103 A 1 HETATM 34 C CDP CO6 . . . E 4 -208.244 -99.914 -27.325 1 76.63 ? CDP CO6 1103 A 1 HETATM 35 C CEP CO6 . . . E 4 -210.401 -99.927 -26.069 1 83.32 ? CEP CO6 1103 A 1 HETATM 36 C CAP CO6 . . . E 4 -208.256 -100.478 -24.867 1 90.43 ? CAP CO6 1103 A 1 HETATM 37 O OAP CO6 . . . E 4 -207.982 -99.111 -24.617 1 92.48 ? OAP CO6 1103 A 1 HETATM 38 C C9P CO6 . . . E 4 -209.026 -101.07 -23.698 1 89.1 ? C9P CO6 1103 A 1 HETATM 39 O O9P CO6 . . . E 4 -209.069 -102.286 -23.534 1 87.41 ? O9P CO6 1103 A 1 HETATM 40 N N8P CO6 . . . E 4 -209.619 -100.204 -22.879 1 91.05 ? N8P CO6 1103 A 1 HETATM 41 C C7P CO6 . . . E 4 -210.341 -100.618 -21.687 1 94.3 ? C7P CO6 1103 A 1 HETATM 42 C C6P CO6 . . . E 4 -209.812 -99.928 -20.452 1 96.9 ? C6P CO6 1103 A 1 HETATM 43 C C5P CO6 . . . E 4 -210.746 -100.072 -19.278 1 101.34 ? C5P CO6 1103 A 1 HETATM 44 O O5P CO6 . . . E 4 -211.734 -100.798 -19.331 1 106.25 ? O5P CO6 1103 A 1 HETATM 45 N N4P CO6 . . . E 4 -210.434 -99.363 -18.2 1 100.98 ? N4P CO6 1103 A 1 HETATM 46 C C3P CO6 . . . E 4 -211.252 -99.359 -16.997 1 101.44 ? C3P CO6 1103 A 1 HETATM 47 C C2P CO6 . . . E 4 -210.612 -98.514 -15.916 1 101.25 ? C2P CO6 1103 A 1 HETATM 48 S S1P CO6 . . . E 4 -211.651 -98.389 -14.437 1 83.12 ? S1P CO6 1103 A 1 HETATM 49 O O1 CO6 . . . E 4 -209.618 -96.821 -13.805 1 122.12 ? O1 CO6 1103 A 1 HETATM 50 C C1 CO6 . . . E 4 -210.666 -97.28 -13.431 1 124.43 ? C1 CO6 1103 A 1 HETATM 51 C C2 CO6 . . . E 4 -211.397 -95.491 -11.885 1 129.92 ? C2 CO6 1103 A 1 HETATM 52 C C3 CO6 . . . E 4 -211.295 -96.98 -12.084 1 126.74 ? C3 CO6 1103 A 1 HETATM 53 C C4 CO6 . . . E 4 -210.51 -97.621 -10.957 1 125.15 ? C4 CO6 1103 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #