data_5CJU
#
_model_server_result.job_id            7p35ss5M0aJoXqCZhN24QA 
_model_server_result.datetime_utc      '2024-11-15 04:59:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cju 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1102}' 
#
_entry.id    5CJU 
#
_exptl.entry_id    5CJU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Butyryl Coenzyme A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CJU 
_cell.length_a            316.76 
_cell.length_b            316.76 
_cell.length_c            342.67 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CJU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc5 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc7 A O THR 331 A THR 311 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc9 F O2B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc16 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc17 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc19 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc20 K O2B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc21 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                BCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Butyryl Coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 N4 BCO doub 293 n y 
C15 N3 BCO sing 294 n y 
N4 C12 BCO sing 295 n y 
N3 C6 BCO doub 296 n y 
O9 P1 BCO doub 297 n n 
C12 N5 BCO sing 298 n n 
C12 C8 BCO doub 299 n y 
O3 C2 BCO sing 300 n n 
C6 C8 BCO sing 301 n y 
C6 N1 BCO sing 302 n y 
C2 C4 BCO sing 303 n n 
C2 C1 BCO sing 304 n n 
C8 N2 BCO sing 305 n y 
P1 O6 BCO sing 306 n n 
P1 O5 BCO sing 307 n n 
P1 O2 BCO sing 308 n n 
C4 N1 BCO sing 309 n n 
C4 O1 BCO sing 310 n n 
N1 C7 BCO sing 311 n y 
O2 C1 BCO sing 312 n n 
C1 C3 BCO sing 313 n n 
N2 C7 BCO doub 314 n y 
O1 C3 BCO sing 315 n n 
C3 C5 BCO sing 316 n n 
C5 O4 BCO sing 317 n n 
O4 P2 BCO sing 318 n n 
O10 P2 BCO doub 319 n n 
P2 O7 BCO sing 320 n n 
P2 O12 BCO sing 321 n n 
O7 P3 BCO sing 322 n n 
P3 O13 BCO doub 323 n n 
P3 O14 BCO sing 324 n n 
P3 O8 BCO sing 325 n n 
O8 C11 BCO sing 326 n n 
C14 C9 BCO sing 327 n n 
C11 C9 BCO sing 328 n n 
C9 C13 BCO sing 329 n n 
C9 C10 BCO sing 330 n n 
C10 O11 BCO sing 331 n n 
C10 C16 BCO sing 332 n n 
C16 O15 BCO doub 333 n n 
C16 N6 BCO sing 334 n n 
N6 C17 BCO sing 335 n n 
C17 C18 BCO sing 336 n n 
C18 C19 BCO sing 337 n n 
C19 O16 BCO doub 338 n n 
C19 N7 BCO sing 339 n n 
N7 C20 BCO sing 340 n n 
C20 C21 BCO sing 341 n n 
C21 S1 BCO sing 342 n n 
S1 C22 BCO sing 343 n n 
C22 O17 BCO doub 344 n n 
C22 C23 BCO sing 345 n n 
C23 C24 BCO sing 346 n n 
C24 C25 BCO sing 347 n n 
O5 H1 BCO sing 348 n n 
O6 H2 BCO sing 349 n n 
C1 H3 BCO sing 350 n n 
C2 H4 BCO sing 351 n n 
O3 H5 BCO sing 352 n n 
C4 H6 BCO sing 353 n n 
C7 H7 BCO sing 354 n n 
C15 H8 BCO sing 355 n n 
N5 H9 BCO sing 356 n n 
N5 H10 BCO sing 357 n n 
C3 H11 BCO sing 358 n n 
C5 H12 BCO sing 359 n n 
C5 H13 BCO sing 360 n n 
O12 H14 BCO sing 361 n n 
O14 H15 BCO sing 362 n n 
C11 H16 BCO sing 363 n n 
C11 H17 BCO sing 364 n n 
C13 H18 BCO sing 365 n n 
C13 H19 BCO sing 366 n n 
C13 H20 BCO sing 367 n n 
C14 H21 BCO sing 368 n n 
C14 H22 BCO sing 369 n n 
C14 H23 BCO sing 370 n n 
C10 H24 BCO sing 371 n n 
O11 H25 BCO sing 372 n n 
N6 H26 BCO sing 373 n n 
C17 H27 BCO sing 374 n n 
C18 H28 BCO sing 375 n n 
N7 H29 BCO sing 376 n n 
C20 H30 BCO sing 377 n n 
C20 H31 BCO sing 378 n n 
C21 H32 BCO sing 379 n n 
C21 H33 BCO sing 380 n n 
C23 H34 BCO sing 381 n n 
C24 H35 BCO sing 382 n n 
C25 H36 BCO sing 383 n n 
C25 H37 BCO sing 384 n n 
C25 H38 BCO sing 385 n n 
C17 H39 BCO sing 386 n n 
C18 H40 BCO sing 387 n n 
C23 H41 BCO sing 388 n n 
C24 H42 BCO sing 389 n n 
#
_atom_sites.entry_id                     5CJU 
_atom_sites.fract_transf_matrix[1][1]    0.003157 
_atom_sites.fract_transf_matrix[1][2]    0.001823 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003645 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B12 A 1 1101 1198 B12 B12 . 
D 3 5AD A 1 1102 1199 5AD 5AD . 
E 4 BCO A 1 1103 1211 BCO BCO . 
F 5 GDP A 1 1104 1200 GDP GDP . 
G 6 MG A 1 1105 1 MG MG . 
H 6 MG A 1 1106 3 MG MG . 
I 2 B12 B 1 1101 1198 B12 B12 . 
J 4 BCO B 1 1102 1211 BCO BCO . 
K 5 GDP B 1 1103 1201 GDP GDP . 
L 6 MG B 1 1104 2 MG MG . 
M 6 MG B 1 1105 4 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 BCO . . . J 4 -251.175 -67.669 -28.431 1 174.16 ? O9 BCO 1102 B 1 
HETATM 2 P P1 BCO . . . J 4 -251.047 -66.435 -27.532 1 175.06 ? P1 BCO 1102 B 1 
HETATM 3 O O5 BCO . . . J 4 -250.719 -65.194 -28.299 1 174.14 ? O5 BCO 1102 B 1 
HETATM 4 O O6 BCO . . . J 4 -252.331 -66.3 -26.708 1 175.35 ? O6 BCO 1102 B 1 
HETATM 5 O O2 BCO . . . J 4 -249.867 -66.765 -26.479 1 156.44 ? O2 BCO 1102 B 1 
HETATM 6 C C1 BCO . . . J 4 -249.704 -67.979 -25.715 1 152.53 ? C1 BCO 1102 B 1 
HETATM 7 C C2 BCO . . . J 4 -248.483 -68.764 -26.191 1 149.56 ? C2 BCO 1102 B 1 
HETATM 8 O O3 BCO . . . J 4 -248.361 -68.706 -27.608 1 150.27 ? O3 BCO 1102 B 1 
HETATM 9 C C4 BCO . . . J 4 -247.365 -67.974 -25.513 1 146.76 ? C4 BCO 1102 B 1 
HETATM 10 N N1 BCO . . . J 4 -246.143 -68.741 -25.285 1 140.95 ? N1 BCO 1102 B 1 
HETATM 11 C C7 BCO . . . J 4 -246.007 -69.867 -24.517 1 139.53 ? C7 BCO 1102 B 1 
HETATM 12 N N2 BCO . . . J 4 -244.788 -70.347 -24.48 1 136.3 ? N2 BCO 1102 B 1 
HETATM 13 C C8 BCO . . . J 4 -244.068 -69.475 -25.283 1 132.77 ? C8 BCO 1102 B 1 
HETATM 14 C C6 BCO . . . J 4 -244.89 -68.479 -25.787 1 134.85 ? C6 BCO 1102 B 1 
HETATM 15 N N3 BCO . . . J 4 -244.529 -67.474 -26.592 1 130.34 ? N3 BCO 1102 B 1 
HETATM 16 C C15 BCO . . . J 4 -243.224 -67.532 -26.873 1 127.55 ? C15 BCO 1102 B 1 
HETATM 17 N N4 BCO . . . J 4 -242.315 -68.423 -26.464 1 125.99 ? N4 BCO 1102 B 1 
HETATM 18 C C12 BCO . . . J 4 -242.71 -69.428 -25.653 1 126.87 ? C12 BCO 1102 B 1 
HETATM 19 N N5 BCO . . . J 4 -241.798 -70.318 -25.251 1 123.66 ? N5 BCO 1102 B 1 
HETATM 20 O O1 BCO . . . J 4 -247.875 -67.563 -24.259 1 149.36 ? O1 BCO 1102 B 1 
HETATM 21 C C3 BCO . . . J 4 -249.32 -67.551 -24.295 1 150.82 ? C3 BCO 1102 B 1 
HETATM 22 C C5 BCO . . . J 4 -249.866 -68.413 -23.183 1 150.28 ? C5 BCO 1102 B 1 
HETATM 23 O O4 BCO . . . J 4 -249.329 -69.747 -23.304 1 150.62 ? O4 BCO 1102 B 1 
HETATM 24 P P2 BCO . . . J 4 -249.95 -70.976 -22.498 1 192.47 ? P2 BCO 1102 B 1 
HETATM 25 O O12 BCO . . . J 4 -251.331 -70.74 -22.015 1 192.67 ? O12 BCO 1102 B 1 
HETATM 26 O O10 BCO . . . J 4 -249.928 -72.203 -23.411 1 190.29 ? O10 BCO 1102 B 1 
HETATM 27 O O7 BCO . . . J 4 -248.985 -71.264 -21.262 1 199.33 ? O7 BCO 1102 B 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#