data_5CJU # _model_server_result.job_id 7ipVMHJ248QABnFCTvq28g _model_server_result.datetime_utc '2025-06-25 03:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 5CJU # _exptl.entry_id 5CJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 837.624 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Butyryl Coenzyme A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CJU _cell.length_a 316.76 _cell.length_b 316.76 _cell.length_c 342.67 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc7 A O THR 331 A THR 311 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 F O2B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc16 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc17 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc19 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc20 K O2B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc21 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C25 H42 N7 O17 P3 S' _chem_comp.formula_weight 837.624 _chem_comp.id BCO _chem_comp.mon_nstd_flag . _chem_comp.name 'Butyryl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N4 BCO doub 293 n y C15 N3 BCO sing 294 n y N4 C12 BCO sing 295 n y N3 C6 BCO doub 296 n y O9 P1 BCO doub 297 n n C12 N5 BCO sing 298 n n C12 C8 BCO doub 299 n y O3 C2 BCO sing 300 n n C6 C8 BCO sing 301 n y C6 N1 BCO sing 302 n y C2 C4 BCO sing 303 n n C2 C1 BCO sing 304 n n C8 N2 BCO sing 305 n y P1 O6 BCO sing 306 n n P1 O5 BCO sing 307 n n P1 O2 BCO sing 308 n n C4 N1 BCO sing 309 n n C4 O1 BCO sing 310 n n N1 C7 BCO sing 311 n y O2 C1 BCO sing 312 n n C1 C3 BCO sing 313 n n N2 C7 BCO doub 314 n y O1 C3 BCO sing 315 n n C3 C5 BCO sing 316 n n C5 O4 BCO sing 317 n n O4 P2 BCO sing 318 n n O10 P2 BCO doub 319 n n P2 O7 BCO sing 320 n n P2 O12 BCO sing 321 n n O7 P3 BCO sing 322 n n P3 O13 BCO doub 323 n n P3 O14 BCO sing 324 n n P3 O8 BCO sing 325 n n O8 C11 BCO sing 326 n n C14 C9 BCO sing 327 n n C11 C9 BCO sing 328 n n C9 C13 BCO sing 329 n n C9 C10 BCO sing 330 n n C10 O11 BCO sing 331 n n C10 C16 BCO sing 332 n n C16 O15 BCO doub 333 n n C16 N6 BCO sing 334 n n N6 C17 BCO sing 335 n n C17 C18 BCO sing 336 n n C18 C19 BCO sing 337 n n C19 O16 BCO doub 338 n n C19 N7 BCO sing 339 n n N7 C20 BCO sing 340 n n C20 C21 BCO sing 341 n n C21 S1 BCO sing 342 n n S1 C22 BCO sing 343 n n C22 O17 BCO doub 344 n n C22 C23 BCO sing 345 n n C23 C24 BCO sing 346 n n C24 C25 BCO sing 347 n n O5 H1 BCO sing 348 n n O6 H2 BCO sing 349 n n C1 H3 BCO sing 350 n n C2 H4 BCO sing 351 n n O3 H5 BCO sing 352 n n C4 H6 BCO sing 353 n n C7 H7 BCO sing 354 n n C15 H8 BCO sing 355 n n N5 H9 BCO sing 356 n n N5 H10 BCO sing 357 n n C3 H11 BCO sing 358 n n C5 H12 BCO sing 359 n n C5 H13 BCO sing 360 n n O12 H14 BCO sing 361 n n O14 H15 BCO sing 362 n n C11 H16 BCO sing 363 n n C11 H17 BCO sing 364 n n C13 H18 BCO sing 365 n n C13 H19 BCO sing 366 n n C13 H20 BCO sing 367 n n C14 H21 BCO sing 368 n n C14 H22 BCO sing 369 n n C14 H23 BCO sing 370 n n C10 H24 BCO sing 371 n n O11 H25 BCO sing 372 n n N6 H26 BCO sing 373 n n C17 H27 BCO sing 374 n n C18 H28 BCO sing 375 n n N7 H29 BCO sing 376 n n C20 H30 BCO sing 377 n n C20 H31 BCO sing 378 n n C21 H32 BCO sing 379 n n C21 H33 BCO sing 380 n n C23 H34 BCO sing 381 n n C24 H35 BCO sing 382 n n C25 H36 BCO sing 383 n n C25 H37 BCO sing 384 n n C25 H38 BCO sing 385 n n C17 H39 BCO sing 386 n n C18 H40 BCO sing 387 n n C23 H41 BCO sing 388 n n C24 H42 BCO sing 389 n n # _atom_sites.entry_id 5CJU _atom_sites.fract_transf_matrix[1][1] 0.003157 _atom_sites.fract_transf_matrix[1][2] 0.001823 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B12 A 1 1101 1198 B12 B12 . D 3 5AD A 1 1102 1199 5AD 5AD . E 4 BCO A 1 1103 1211 BCO BCO . F 5 GDP A 1 1104 1200 GDP GDP . G 6 MG A 1 1105 1 MG MG . H 6 MG A 1 1106 3 MG MG . I 2 B12 B 1 1101 1198 B12 B12 . J 4 BCO B 1 1102 1211 BCO BCO . K 5 GDP B 1 1103 1201 GDP GDP . L 6 MG B 1 1104 2 MG MG . M 6 MG B 1 1105 4 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 BCO . . . E 4 -203.932 -102.719 -34.278 1 143.71 ? O9 BCO 1103 A 1 HETATM 2 P P1 BCO . . . E 4 -205.13 -102.966 -35.138 1 145.89 ? P1 BCO 1103 A 1 HETATM 3 O O5 BCO . . . E 4 -205.931 -101.689 -35.418 1 145.76 ? O5 BCO 1103 A 1 HETATM 4 O O6 BCO . . . E 4 -204.778 -103.635 -36.47 1 147.03 ? O6 BCO 1103 A 1 HETATM 5 O O2 BCO . . . E 4 -206.138 -103.982 -34.405 1 110.56 ? O2 BCO 1103 A 1 HETATM 6 C C1 BCO . . . E 4 -207.578 -103.896 -34.353 1 107.92 ? C1 BCO 1103 A 1 HETATM 7 C C2 BCO . . . E 4 -208.173 -104.035 -35.752 1 109.45 ? C2 BCO 1103 A 1 HETATM 8 O O3 BCO . . . E 4 -207.357 -104.885 -36.548 1 111.73 ? O3 BCO 1103 A 1 HETATM 9 C C4 BCO . . . E 4 -209.512 -104.708 -35.429 1 108.89 ? C4 BCO 1103 A 1 HETATM 10 N N1 BCO . . . E 4 -210.623 -103.784 -35.227 1 106.68 ? N1 BCO 1103 A 1 HETATM 11 C C7 BCO . . . E 4 -211.136 -103.364 -34.029 1 107.58 ? C7 BCO 1103 A 1 HETATM 12 N N2 BCO . . . E 4 -212.161 -102.554 -34.14 1 106.77 ? N2 BCO 1103 A 1 HETATM 13 C C8 BCO . . . E 4 -212.335 -102.431 -35.51 1 103.09 ? C8 BCO 1103 A 1 HETATM 14 C C6 BCO . . . E 4 -211.391 -103.181 -36.193 1 103.18 ? C6 BCO 1103 A 1 HETATM 15 N N3 BCO . . . E 4 -211.266 -103.291 -37.52 1 103.13 ? N3 BCO 1103 A 1 HETATM 16 C C15 BCO . . . E 4 -212.194 -102.565 -38.15 1 103.28 ? C15 BCO 1103 A 1 HETATM 17 N N4 BCO . . . E 4 -213.16 -101.802 -37.63 1 101.45 ? N4 BCO 1103 A 1 HETATM 18 C C12 BCO . . . E 4 -213.263 -101.713 -36.286 1 101.74 ? C12 BCO 1103 A 1 HETATM 19 N N5 BCO . . . E 4 -214.239 -100.959 -35.771 1 102.37 ? N5 BCO 1103 A 1 HETATM 20 O O1 BCO . . . E 4 -209.332 -105.454 -34.237 1 106.62 ? O1 BCO 1103 A 1 HETATM 21 C C3 BCO . . . E 4 -208.039 -105.173 -33.661 1 106.05 ? C3 BCO 1103 A 1 HETATM 22 C C5 BCO . . . E 4 -208.165 -105.076 -32.163 1 104.12 ? C5 BCO 1103 A 1 HETATM 23 O O4 BCO . . . E 4 -209.015 -103.957 -31.838 1 101.78 ? O4 BCO 1103 A 1 HETATM 24 P P2 BCO . . . E 4 -208.663 -102.979 -30.627 1 102.27 ? P2 BCO 1103 A 1 HETATM 25 O O12 BCO . . . E 4 -207.571 -103.471 -29.752 1 102.84 ? O12 BCO 1103 A 1 HETATM 26 O O10 BCO . . . E 4 -208.296 -101.616 -31.205 1 99.22 ? O10 BCO 1103 A 1 HETATM 27 O O7 BCO . . . E 4 -209.995 -102.804 -29.771 1 75.8 ? O7 BCO 1103 A 1 HETATM 28 P P3 BCO . . . E 4 -210.411 -103.365 -28.34 1 106.68 ? P3 BCO 1103 A 1 HETATM 29 O O14 BCO . . . E 4 -209.474 -104.438 -27.928 1 105.89 ? O14 BCO 1103 A 1 HETATM 30 O O13 BCO . . . E 4 -211.83 -103.917 -28.437 1 108.79 ? O13 BCO 1103 A 1 HETATM 31 O O8 BCO . . . E 4 -210.425 -102.121 -27.345 1 84.1 ? O8 BCO 1103 A 1 HETATM 32 C C11 BCO . . . E 4 -209.412 -102.044 -26.331 1 84.26 ? C11 BCO 1103 A 1 HETATM 33 C C9 BCO . . . E 4 -208.977 -100.594 -26.128 1 82.82 ? C9 BCO 1103 A 1 HETATM 34 C C13 BCO . . . E 4 -210.227 -99.709 -26.09 1 82.88 ? C13 BCO 1103 A 1 HETATM 35 C C14 BCO . . . E 4 -208.097 -100.176 -27.312 1 77.94 ? C14 BCO 1103 A 1 HETATM 36 C C10 BCO . . . E 4 -208.183 -100.433 -24.807 1 88.84 ? C10 BCO 1103 A 1 HETATM 37 O O11 BCO . . . E 4 -207.945 -99.056 -24.577 1 92.67 ? O11 BCO 1103 A 1 HETATM 38 C C16 BCO . . . E 4 -208.927 -101.033 -23.625 1 91.67 ? C16 BCO 1103 A 1 HETATM 39 O O15 BCO . . . E 4 -208.806 -102.225 -23.355 1 91.8 ? O15 BCO 1103 A 1 HETATM 40 N N6 BCO . . . E 4 -209.682 -100.199 -22.914 1 93.31 ? N6 BCO 1103 A 1 HETATM 41 C C17 BCO . . . E 4 -210.388 -100.612 -21.711 1 92.27 ? C17 BCO 1103 A 1 HETATM 42 C C18 BCO . . . E 4 -209.873 -99.888 -20.488 1 92.42 ? C18 BCO 1103 A 1 HETATM 43 C C19 BCO . . . E 4 -210.78 -100.067 -19.299 1 94.74 ? C19 BCO 1103 A 1 HETATM 44 O O16 BCO . . . E 4 -211.714 -100.864 -19.321 1 99.07 ? O16 BCO 1103 A 1 HETATM 45 N N7 BCO . . . E 4 -210.51 -99.31 -18.242 1 93.4 ? N7 BCO 1103 A 1 HETATM 46 C C20 BCO . . . E 4 -211.328 -99.323 -17.04 1 91.93 ? C20 BCO 1103 A 1 HETATM 47 C C21 BCO . . . E 4 -210.631 -98.645 -15.878 1 90.07 ? C21 BCO 1103 A 1 HETATM 48 S S1 BCO . . . E 4 -211.791 -98.408 -14.506 1 88.63 ? S1 BCO 1103 A 1 HETATM 49 C C22 BCO . . . E 4 -210.953 -97.205 -13.535 1 110.27 ? C22 BCO 1103 A 1 HETATM 50 O O17 BCO . . . E 4 -209.875 -96.764 -13.827 1 108.63 ? O17 BCO 1103 A 1 HETATM 51 C C23 BCO . . . E 4 -211.718 -96.803 -12.303 1 111.55 ? C23 BCO 1103 A 1 HETATM 52 C C24 BCO . . . E 4 -210.785 -96.401 -11.192 1 114.42 ? C24 BCO 1103 A 1 HETATM 53 C C25 BCO . . . E 4 -209.938 -97.55 -10.724 1 116.92 ? C25 BCO 1103 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #