data_5CJW # _model_server_result.job_id WyVPQ21XOEtA2W67NAPNpw _model_server_result.datetime_utc '2024-11-15 01:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1102}' # _entry.id 5CJW # _exptl.entry_id 5CJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 851.651 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pivalyl-coenzyme A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CJW _cell.length_a 317.52 _cell.length_b 317.52 _cell.length_c 343.04 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A OD2 ASP 282 A ASP 262 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.145 ? metalc ? metalc9 F O2B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc16 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc17 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc19 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc20 K O2B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc21 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C26 H44 N7 O17 P3 S' _chem_comp.formula_weight 851.651 _chem_comp.id 52O _chem_comp.mon_nstd_flag . _chem_comp.name 'pivalyl-coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N3 52O doub 1 n y C15 N4 52O sing 2 n y N3 C6 52O sing 3 n y N4 C12 52O doub 4 n y O6 P1 52O doub 5 n n O3 C2 52O sing 6 n n O5 P1 52O sing 7 n n C6 C8 52O doub 8 n y C6 N1 52O sing 9 n y C12 N5 52O sing 10 n n C12 C8 52O sing 11 n y C2 C4 52O sing 12 n n C2 C1 52O sing 13 n n P1 O9 52O sing 14 n n P1 O2 52O sing 15 n n C4 N1 52O sing 16 n n C4 O1 52O sing 17 n n C8 N2 52O sing 18 n y N1 C7 52O sing 19 n y O2 C1 52O sing 20 n n C1 C3 52O sing 21 n n O1 C3 52O sing 22 n n N2 C7 52O doub 23 n y C3 C5 52O sing 24 n n C5 O4 52O sing 25 n n O4 P2 52O sing 26 n n O12 P2 52O doub 27 n n P2 O7 52O sing 28 n n P2 O10 52O sing 29 n n O7 P3 52O sing 30 n n P3 O13 52O doub 31 n n P3 O14 52O sing 32 n n P3 O8 52O sing 33 n n O8 C11 52O sing 34 n n C13 C9 52O sing 35 n n C11 C9 52O sing 36 n n C9 C14 52O sing 37 n n C9 C10 52O sing 38 n n C10 O11 52O sing 39 n n C10 C16 52O sing 40 n n O15 C16 52O doub 41 n n C16 N6 52O sing 42 n n N6 C17 52O sing 43 n n C17 C18 52O sing 44 n n C18 C19 52O sing 45 n n O16 C19 52O doub 46 n n C19 N7 52O sing 47 n n N7 C20 52O sing 48 n n C20 C21 52O sing 49 n n C21 S1 52O sing 50 n n S1 C22 52O sing 51 n n O17 C22 52O doub 52 n n C22 C23 52O sing 53 n n C23 C26 52O sing 54 n n C23 C25 52O sing 55 n n C23 C24 52O sing 56 n n O3 H1 52O sing 57 n n C4 H2 52O sing 58 n n C5 H3 52O sing 59 n n C5 H4 52O sing 60 n n C7 H5 52O sing 61 n n O5 H6 52O sing 62 n n C10 H7 52O sing 63 n n C11 H8 52O sing 64 n n C11 H9 52O sing 65 n n C13 H10 52O sing 66 n n C13 H11 52O sing 67 n n C13 H12 52O sing 68 n n C14 H13 52O sing 69 n n C14 H14 52O sing 70 n n C14 H15 52O sing 71 n n C15 H16 52O sing 72 n n O9 H17 52O sing 73 n n C1 H18 52O sing 74 n n C2 H19 52O sing 75 n n N5 H20 52O sing 76 n n N5 H21 52O sing 77 n n C3 H22 52O sing 78 n n O10 H23 52O sing 79 n n O14 H24 52O sing 80 n n O11 H25 52O sing 81 n n N6 H26 52O sing 82 n n C17 H27 52O sing 83 n n C17 H28 52O sing 84 n n C18 H29 52O sing 85 n n C18 H30 52O sing 86 n n N7 H31 52O sing 87 n n C20 H32 52O sing 88 n n C20 H33 52O sing 89 n n C21 H34 52O sing 90 n n C21 H35 52O sing 91 n n C24 H36 52O sing 92 n n C24 H37 52O sing 93 n n C24 H38 52O sing 94 n n C25 H39 52O sing 95 n n C25 H40 52O sing 96 n n C25 H41 52O sing 97 n n C26 H42 52O sing 98 n n C26 H43 52O sing 99 n n C26 H44 52O sing 100 n n # _atom_sites.entry_id 5CJW _atom_sites.fract_transf_matrix[1][1] 0.003149 _atom_sites.fract_transf_matrix[1][2] 0.001818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B12 A 1 1101 1198 B12 B12 . D 3 5AD A 1 1102 1199 5AD 5AD . E 4 52O A 1 1103 1211 52O XXX . F 5 GDP A 1 1104 1200 GDP GDP . G 6 MG A 1 1105 1 MG MG . H 6 MG A 1 1106 3 MG MG . I 2 B12 B 1 1101 1198 B12 B12 . J 4 52O B 1 1102 1211 52O XXX . K 5 GDP B 1 1103 1201 GDP GDP . L 6 MG B 1 1104 2 MG MG . M 6 MG B 1 1105 4 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 52O . . . J 4 -248.867 -68.777 -27.739 1 173.3 ? O3 52O 1102 B 1 HETATM 2 C C4 52O . . . J 4 -247.926 -68.081 -25.61 1 169.14 ? C4 52O 1102 B 1 HETATM 3 C C5 52O . . . J 4 -250.443 -68.589 -23.355 1 175.12 ? C5 52O 1102 B 1 HETATM 4 O O4 52O . . . J 4 -249.749 -69.853 -23.413 1 176 ? O4 52O 1102 B 1 HETATM 5 C C6 52O . . . J 4 -245.455 -68.65 -25.772 1 154.88 ? C6 52O 1102 B 1 HETATM 6 N N1 52O . . . J 4 -246.733 -68.871 -25.319 1 161.58 ? N1 52O 1102 B 1 HETATM 7 C C7 52O . . . J 4 -246.661 -69.996 -24.539 1 158.92 ? C7 52O 1102 B 1 HETATM 8 C C8 52O . . . J 4 -244.683 -69.667 -25.233 1 151.77 ? C8 52O 1102 B 1 HETATM 9 N N2 52O . . . J 4 -245.459 -70.512 -24.454 1 155.18 ? N2 52O 1102 B 1 HETATM 10 O O5 52O . . . J 4 -252.686 -66.21 -27.532 1 205.41 ? O5 52O 1102 B 1 HETATM 11 O O6 52O . . . J 4 -250.636 -65.605 -28.801 1 205.7 ? O6 52O 1102 B 1 HETATM 12 C C12 52O . . . J 4 -243.313 -69.666 -25.553 1 146.32 ? C12 52O 1102 B 1 HETATM 13 N N3 52O . . . J 4 -245.033 -67.662 -26.569 1 151.08 ? N3 52O 1102 B 1 HETATM 14 O O7 52O . . . J 4 -250.034 -71.725 -21.672 1 224.89 ? O7 52O 1102 B 1 HETATM 15 C C15 52O . . . J 4 -243.721 -67.763 -26.802 1 148.07 ? C15 52O 1102 B 1 HETATM 16 N N4 52O . . . J 4 -242.856 -68.679 -26.355 1 145.94 ? N4 52O 1102 B 1 HETATM 17 O O9 52O . . . J 4 -251.384 -68.008 -28.728 1 204.56 ? O9 52O 1102 B 1 HETATM 18 P P1 52O . . . J 4 -251.311 -66.712 -27.986 1 205.68 ? P1 52O 1102 B 1 HETATM 19 O O2 52O . . . J 4 -250.43 -66.882 -26.641 1 177.71 ? O2 52O 1102 B 1 HETATM 20 C C1 52O . . . J 4 -250.265 -68.093 -25.873 1 174.82 ? C1 52O 1102 B 1 HETATM 21 C C2 52O . . . J 4 -249.027 -68.864 -26.327 1 172.27 ? C2 52O 1102 B 1 HETATM 22 N N5 52O . . . J 4 -242.445 -70.581 -25.112 1 143.59 ? N5 52O 1102 B 1 HETATM 23 O O1 52O . . . J 4 -248.477 -67.635 -24.384 1 172.5 ? O1 52O 1102 B 1 HETATM 24 C C3 52O . . . J 4 -249.92 -67.68 -24.441 1 174.34 ? C3 52O 1102 B 1 HETATM 25 P P2 52O . . . J 4 -250.455 -71.226 -23.002 1 225.3 ? P2 52O 1102 B 1 HETATM 26 O O12 52O . . . J 4 -250.117 -72.312 -24.12 1 131.44 ? O12 52O 1102 B 1 HETATM 27 O O10 52O . . . J 4 -251.965 -71.001 -23.006 1 225.2 ? O10 52O 1102 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 114 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #