data_5CJW # _model_server_result.job_id eeBZ1gz-zhD3EmCEOhsBzw _model_server_result.datetime_utc '2025-02-17 19:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 5CJW # _exptl.entry_id 5CJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 851.651 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pivalyl-coenzyme A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CJW _cell.length_a 317.52 _cell.length_b 317.52 _cell.length_c 343.04 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 39 1_555 C CO B12 . A B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc2 A OG SER 243 A SER 223 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A OD2 ASP 282 A ASP 262 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc6 A OE2 GLU 330 A GLU 310 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 A OE2 GLU 330 A GLU 310 1_555 H MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc8 C CO B12 . A B12 1101 1_555 D C5' 5AD . A 5AD 1102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.145 ? metalc ? metalc9 F O2B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc10 F O3B GDP . A GDP 1104 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 B NE2 HIS 59 B HIS 39 1_555 I CO B12 . B B12 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc12 B OG SER 243 B SER 223 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 B O ILE 268 B ILE 248 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc14 B OD1 ASP 269 B ASP 249 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc15 B OD1 ASP 282 B ASP 262 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc16 B OD2 ASP 282 B ASP 262 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc17 B OE2 GLU 330 B GLU 310 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc18 B OE2 GLU 330 B GLU 310 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc19 B O THR 331 B THR 311 1_555 M MG MG . B MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc20 K O2B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc21 K O3B GDP . B GDP 1103 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C26 H44 N7 O17 P3 S' _chem_comp.formula_weight 851.651 _chem_comp.id 52O _chem_comp.mon_nstd_flag . _chem_comp.name 'pivalyl-coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N3 52O doub 1 n y C15 N4 52O sing 2 n y N3 C6 52O sing 3 n y N4 C12 52O doub 4 n y O6 P1 52O doub 5 n n O3 C2 52O sing 6 n n O5 P1 52O sing 7 n n C6 C8 52O doub 8 n y C6 N1 52O sing 9 n y C12 N5 52O sing 10 n n C12 C8 52O sing 11 n y C2 C4 52O sing 12 n n C2 C1 52O sing 13 n n P1 O9 52O sing 14 n n P1 O2 52O sing 15 n n C4 N1 52O sing 16 n n C4 O1 52O sing 17 n n C8 N2 52O sing 18 n y N1 C7 52O sing 19 n y O2 C1 52O sing 20 n n C1 C3 52O sing 21 n n O1 C3 52O sing 22 n n N2 C7 52O doub 23 n y C3 C5 52O sing 24 n n C5 O4 52O sing 25 n n O4 P2 52O sing 26 n n O12 P2 52O doub 27 n n P2 O7 52O sing 28 n n P2 O10 52O sing 29 n n O7 P3 52O sing 30 n n P3 O13 52O doub 31 n n P3 O14 52O sing 32 n n P3 O8 52O sing 33 n n O8 C11 52O sing 34 n n C13 C9 52O sing 35 n n C11 C9 52O sing 36 n n C9 C14 52O sing 37 n n C9 C10 52O sing 38 n n C10 O11 52O sing 39 n n C10 C16 52O sing 40 n n O15 C16 52O doub 41 n n C16 N6 52O sing 42 n n N6 C17 52O sing 43 n n C17 C18 52O sing 44 n n C18 C19 52O sing 45 n n O16 C19 52O doub 46 n n C19 N7 52O sing 47 n n N7 C20 52O sing 48 n n C20 C21 52O sing 49 n n C21 S1 52O sing 50 n n S1 C22 52O sing 51 n n O17 C22 52O doub 52 n n C22 C23 52O sing 53 n n C23 C26 52O sing 54 n n C23 C25 52O sing 55 n n C23 C24 52O sing 56 n n O3 H1 52O sing 57 n n C4 H2 52O sing 58 n n C5 H3 52O sing 59 n n C5 H4 52O sing 60 n n C7 H5 52O sing 61 n n O5 H6 52O sing 62 n n C10 H7 52O sing 63 n n C11 H8 52O sing 64 n n C11 H9 52O sing 65 n n C13 H10 52O sing 66 n n C13 H11 52O sing 67 n n C13 H12 52O sing 68 n n C14 H13 52O sing 69 n n C14 H14 52O sing 70 n n C14 H15 52O sing 71 n n C15 H16 52O sing 72 n n O9 H17 52O sing 73 n n C1 H18 52O sing 74 n n C2 H19 52O sing 75 n n N5 H20 52O sing 76 n n N5 H21 52O sing 77 n n C3 H22 52O sing 78 n n O10 H23 52O sing 79 n n O14 H24 52O sing 80 n n O11 H25 52O sing 81 n n N6 H26 52O sing 82 n n C17 H27 52O sing 83 n n C17 H28 52O sing 84 n n C18 H29 52O sing 85 n n C18 H30 52O sing 86 n n N7 H31 52O sing 87 n n C20 H32 52O sing 88 n n C20 H33 52O sing 89 n n C21 H34 52O sing 90 n n C21 H35 52O sing 91 n n C24 H36 52O sing 92 n n C24 H37 52O sing 93 n n C24 H38 52O sing 94 n n C25 H39 52O sing 95 n n C25 H40 52O sing 96 n n C25 H41 52O sing 97 n n C26 H42 52O sing 98 n n C26 H43 52O sing 99 n n C26 H44 52O sing 100 n n # _atom_sites.entry_id 5CJW _atom_sites.fract_transf_matrix[1][1] 0.003149 _atom_sites.fract_transf_matrix[1][2] 0.001818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B12 A 1 1101 1198 B12 B12 . D 3 5AD A 1 1102 1199 5AD 5AD . E 4 52O A 1 1103 1211 52O XXX . F 5 GDP A 1 1104 1200 GDP GDP . G 6 MG A 1 1105 1 MG MG . H 6 MG A 1 1106 3 MG MG . I 2 B12 B 1 1101 1198 B12 B12 . J 4 52O B 1 1102 1211 52O XXX . K 5 GDP B 1 1103 1201 GDP GDP . L 6 MG B 1 1104 2 MG MG . M 6 MG B 1 1105 4 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 52O . . . E 4 -208.012 -104.914 -36.615 1 128.83 ? O3 52O 1103 A 1 HETATM 2 C C4 52O . . . E 4 -210.059 -104.819 -35.319 1 123.61 ? C4 52O 1103 A 1 HETATM 3 C C5 52O . . . E 4 -208.426 -104.988 -32.167 1 124.65 ? C5 52O 1103 A 1 HETATM 4 O O4 52O . . . E 4 -209.466 -104.067 -31.781 1 124.87 ? O4 52O 1103 A 1 HETATM 5 C C6 52O . . . E 4 -212.004 -103.314 -35.955 1 116.07 ? C6 52O 1103 A 1 HETATM 6 N N1 52O . . . E 4 -211.202 -103.955 -35.042 1 120.54 ? N1 52O 1103 A 1 HETATM 7 C C7 52O . . . E 4 -211.714 -103.638 -33.811 1 121.88 ? C7 52O 1103 A 1 HETATM 8 C C8 52O . . . E 4 -212.965 -102.649 -35.21 1 116.88 ? C8 52O 1103 A 1 HETATM 9 N N2 52O . . . E 4 -212.768 -102.86 -33.854 1 120.62 ? N2 52O 1103 A 1 HETATM 10 C C9 52O . . . E 4 -209.391 -100.64 -26.025 1 81.77 ? C9 52O 1103 A 1 HETATM 11 O O5 52O . . . E 4 -206.608 -101.692 -35.975 1 164.72 ? O5 52O 1103 A 1 HETATM 12 C C10 52O . . . E 4 -208.742 -100.692 -24.619 1 93.08 ? C10 52O 1103 A 1 HETATM 13 O O6 52O . . . E 4 -205.793 -103.838 -36.936 1 160.04 ? O6 52O 1103 A 1 HETATM 14 C C11 52O . . . E 4 -209.544 -102.041 -26.615 1 79.31 ? C11 52O 1103 A 1 HETATM 15 C C12 52O . . . E 4 -213.928 -101.913 -35.924 1 114.14 ? C12 52O 1103 A 1 HETATM 16 N N3 52O . . . E 4 -211.891 -103.326 -37.288 1 111.92 ? N3 52O 1103 A 1 HETATM 17 C C13 52O . . . E 4 -208.517 -99.807 -26.969 1 75.85 ? C13 52O 1103 A 1 HETATM 18 O O7 52O . . . E 4 -210.748 -103.281 -29.691 1 142.51 ? O7 52O 1103 A 1 HETATM 19 C C14 52O . . . E 4 -210.779 -99.997 -25.929 1 80.12 ? C14 52O 1103 A 1 HETATM 20 O O8 52O . . . E 4 -210.745 -102.121 -27.396 1 75.53 ? O8 52O 1103 A 1 HETATM 21 C C15 52O . . . E 4 -212.853 -102.592 -37.855 1 109.69 ? C15 52O 1103 A 1 HETATM 22 N N4 52O . . . E 4 -213.839 -101.904 -37.272 1 110.06 ? N4 52O 1103 A 1 HETATM 23 O O9 52O . . . E 4 -204.453 -102.687 -35.141 1 165.93 ? O9 52O 1103 A 1 HETATM 24 P P1 52O . . . E 4 -205.818 -102.968 -35.674 1 163.8 ? P1 52O 1103 A 1 HETATM 25 O O2 52O . . . E 4 -206.677 -103.79 -34.582 1 121.82 ? O2 52O 1103 A 1 HETATM 26 C C1 52O . . . E 4 -208.113 -103.834 -34.437 1 122.68 ? C1 52O 1103 A 1 HETATM 27 C C2 52O . . . E 4 -208.801 -104.076 -35.777 1 125.56 ? C2 52O 1103 A 1 HETATM 28 N N5 52O . . . E 4 -214.923 -101.233 -35.346 1 114.88 ? N5 52O 1103 A 1 HETATM 29 O O1 52O . . . E 4 -209.726 -105.515 -34.131 1 123.02 ? O1 52O 1103 A 1 HETATM 30 C C3 52O . . . E 4 -208.416 -105.116 -33.67 1 123.72 ? C3 52O 1103 A 1 HETATM 31 P P2 52O . . . E 4 -209.354 -103.185 -30.457 1 104.75 ? P2 52O 1103 A 1 HETATM 32 O O12 52O . . . E 4 -209.022 -101.766 -30.719 1 101.62 ? O12 52O 1103 A 1 HETATM 33 O O10 52O . . . E 4 -208.292 -103.808 -29.551 1 106.72 ? O10 52O 1103 A 1 HETATM 34 P P3 52O . . . E 4 -211.098 -103.478 -28.149 1 117.74 ? P3 52O 1103 A 1 HETATM 35 O O14 52O . . . E 4 -210.38 -104.661 -27.615 1 114.93 ? O14 52O 1103 A 1 HETATM 36 O O13 52O . . . E 4 -212.601 -103.676 -28.036 1 121.03 ? O13 52O 1103 A 1 HETATM 37 O O11 52O . . . E 4 -208.324 -99.389 -24.256 1 102 ? O11 52O 1103 A 1 HETATM 38 C C16 52O . . . E 4 -209.681 -101.238 -23.555 1 93.81 ? C16 52O 1103 A 1 HETATM 39 O O15 52O . . . E 4 -210.017 -102.42 -23.57 1 89.82 ? O15 52O 1103 A 1 HETATM 40 N N6 52O . . . E 4 -210.085 -100.375 -22.626 1 98.34 ? N6 52O 1103 A 1 HETATM 41 C C17 52O . . . E 4 -210.88 -100.768 -21.474 1 101.4 ? C17 52O 1103 A 1 HETATM 42 C C18 52O . . . E 4 -210.393 -100.084 -20.221 1 102.66 ? C18 52O 1103 A 1 HETATM 43 C C19 52O . . . E 4 -211.354 -100.227 -19.07 1 105.8 ? C19 52O 1103 A 1 HETATM 44 O O16 52O . . . E 4 -212.4 -100.862 -19.177 1 109.11 ? O16 52O 1103 A 1 HETATM 45 N N7 52O . . . E 4 -210.994 -99.616 -17.948 1 106.8 ? N7 52O 1103 A 1 HETATM 46 C C20 52O . . . E 4 -211.816 -99.587 -16.749 1 106.87 ? C20 52O 1103 A 1 HETATM 47 C C21 52O . . . E 4 -211.175 -98.651 -15.745 1 106.02 ? C21 52O 1103 A 1 HETATM 48 S S1 52O . . . E 4 -212.06 -98.46 -14.176 1 96.12 ? S1 52O 1103 A 1 HETATM 49 C C22 52O . . . E 4 -210.985 -97.362 -13.316 1 114.38 ? C22 52O 1103 A 1 HETATM 50 O O17 52O . . . E 4 -209.968 -96.937 -13.792 1 112.95 ? O17 52O 1103 A 1 HETATM 51 C C23 52O . . . E 4 -211.473 -97.013 -11.936 1 113.69 ? C23 52O 1103 A 1 HETATM 52 C C24 52O . . . E 4 -210.375 -97.225 -10.922 1 115.27 ? C24 52O 1103 A 1 HETATM 53 C C25 52O . . . E 4 -212.638 -97.886 -11.573 1 108.42 ? C25 52O 1103 A 1 HETATM 54 C C26 52O . . . E 4 -211.905 -95.571 -11.909 1 114.5 ? C26 52O 1103 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 54 #