data_5CK3 # _model_server_result.job_id 8oxncSXyDDixnABCtHp5QQ _model_server_result.datetime_utc '2024-11-04 22:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ck3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5CK3 # _exptl.entry_id 5CK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.23 _cell.angle_gamma 90 _cell.entry_id 5CK3 _cell.length_a 88.277 _cell.length_b 83.609 _cell.length_c 90.213 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1 C,D,K,L 2 1 E,F,M,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 24 B THR 64 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 B O HIS 65 B HIS 105 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc3 B OG SER 67 B SER 107 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 G MG MG . B MG 401 1_555 H O1B GTP . B GTP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 G MG MG . B MG 401 1_555 H O1G GTP . B GTP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc6 D OG1 THR 24 D THR 64 1_555 K MG MG . D MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 D OG SER 67 D SER 107 1_555 K MG MG . D MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 K MG MG . D MG 400 1_555 L O1G GTP . D GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 K MG MG . D MG 400 1_555 L O3G GTP . D GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc10 K MG MG . D MG 400 1_555 L O1B GTP . D GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc11 F OG1 THR 24 F THR 64 1_555 M MG MG . F MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc12 F OG SER 67 F SER 107 1_555 M MG MG . F MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc13 F OD1 ASP 106 F ASP 146 1_555 M MG MG . F MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc14 F OD2 ASP 106 F ASP 146 1_555 M MG MG . F MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc15 F O THR 107 F THR 147 1_555 M MG MG . F MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc16 M MG MG . F MG 400 1_555 N O3G GTP . F GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc17 M MG MG . F MG 400 1_555 N O1B GTP . F GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CK3 _atom_sites.fract_transf_matrix[1][1] 0.011328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG B 1 401 400 MG MG . H 4 GTP B 1 402 401 GTP GTP . I 5 GOL B 1 403 1 GOL GOL . J 6 SO4 B 1 404 1 SO4 SO4 . K 3 MG D 1 400 400 MG MG . L 4 GTP D 1 401 401 GTP GTP . M 3 MG F 1 400 400 MG MG . N 4 GTP F 1 401 401 GTP GTP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.859 _atom_site.Cartn_y -6.642 _atom_site.Cartn_z 121.143 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #