data_5CK9 # _model_server_result.job_id vHcg6JPE949FPZsDc565-w _model_server_result.datetime_utc '2025-02-18 04:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ck9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5CK9 # _exptl.entry_id 5CK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CK9 _cell.length_a 52.19 _cell.length_b 52.19 _cell.length_c 197.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5CK9 _atom_sites.fract_transf_matrix[1][1] 0.019161 _atom_sites.fract_transf_matrix[1][2] 0.011062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 201 230 1PE PE5 . D 2 1PE A 1 202 231 1PE PE5 . E 2 1PE B 1 201 229 1PE PE5 . F 3 HOH A 1 301 1 HOH HOH . F 3 HOH A 2 302 12 HOH HOH . F 3 HOH A 3 303 56 HOH HOH . F 3 HOH A 4 304 60 HOH HOH . F 3 HOH A 5 305 48 HOH HOH . F 3 HOH A 6 306 50 HOH HOH . F 3 HOH A 7 307 16 HOH HOH . F 3 HOH A 8 308 49 HOH HOH . F 3 HOH A 9 309 54 HOH HOH . F 3 HOH A 10 310 4 HOH HOH . F 3 HOH A 11 311 96 HOH HOH . F 3 HOH A 12 312 66 HOH HOH . F 3 HOH A 13 313 26 HOH HOH . F 3 HOH A 14 314 30 HOH HOH . F 3 HOH A 15 315 123 HOH HOH . F 3 HOH A 16 316 57 HOH HOH . F 3 HOH A 17 317 2 HOH HOH . F 3 HOH A 18 318 88 HOH HOH . F 3 HOH A 19 319 97 HOH HOH . F 3 HOH A 20 320 65 HOH HOH . F 3 HOH A 21 321 107 HOH HOH . F 3 HOH A 22 322 17 HOH HOH . F 3 HOH A 23 323 59 HOH HOH . F 3 HOH A 24 324 77 HOH HOH . F 3 HOH A 25 325 23 HOH HOH . F 3 HOH A 26 326 58 HOH HOH . F 3 HOH A 27 327 124 HOH HOH . F 3 HOH A 28 328 111 HOH HOH . F 3 HOH A 29 329 93 HOH HOH . F 3 HOH A 30 330 138 HOH HOH . F 3 HOH A 31 331 121 HOH HOH . F 3 HOH A 32 332 7 HOH HOH . F 3 HOH A 33 333 137 HOH HOH . F 3 HOH A 34 334 85 HOH HOH . F 3 HOH A 35 335 11 HOH HOH . F 3 HOH A 36 336 118 HOH HOH . F 3 HOH A 37 337 35 HOH HOH . F 3 HOH A 38 338 84 HOH HOH . F 3 HOH A 39 339 28 HOH HOH . F 3 HOH A 40 340 73 HOH HOH . F 3 HOH A 41 341 76 HOH HOH . F 3 HOH A 42 342 87 HOH HOH . F 3 HOH A 43 343 98 HOH HOH . F 3 HOH A 44 344 86 HOH HOH . F 3 HOH A 45 345 3 HOH HOH . F 3 HOH A 46 346 106 HOH HOH . F 3 HOH A 47 347 24 HOH HOH . F 3 HOH A 48 348 125 HOH HOH . F 3 HOH A 49 349 8 HOH HOH . F 3 HOH A 50 350 6 HOH HOH . F 3 HOH A 51 351 105 HOH HOH . F 3 HOH A 52 352 109 HOH HOH . F 3 HOH A 53 353 82 HOH HOH . F 3 HOH A 54 354 146 HOH HOH . F 3 HOH A 55 355 34 HOH HOH . F 3 HOH A 56 356 143 HOH HOH . G 3 HOH B 1 301 116 HOH HOH . G 3 HOH B 2 302 53 HOH HOH . G 3 HOH B 3 303 70 HOH HOH . G 3 HOH B 4 304 69 HOH HOH . G 3 HOH B 5 305 136 HOH HOH . G 3 HOH B 6 306 68 HOH HOH . G 3 HOH B 7 307 63 HOH HOH . G 3 HOH B 8 308 89 HOH HOH . G 3 HOH B 9 309 61 HOH HOH . G 3 HOH B 10 310 39 HOH HOH . G 3 HOH B 11 311 55 HOH HOH . G 3 HOH B 12 312 91 HOH HOH . G 3 HOH B 13 313 47 HOH HOH . G 3 HOH B 14 314 41 HOH HOH . G 3 HOH B 15 315 14 HOH HOH . G 3 HOH B 16 316 67 HOH HOH . G 3 HOH B 17 317 78 HOH HOH . G 3 HOH B 18 318 51 HOH HOH . G 3 HOH B 19 319 64 HOH HOH . G 3 HOH B 20 320 36 HOH HOH . G 3 HOH B 21 321 80 HOH HOH . G 3 HOH B 22 322 95 HOH HOH . G 3 HOH B 23 323 45 HOH HOH . G 3 HOH B 24 324 37 HOH HOH . G 3 HOH B 25 325 103 HOH HOH . G 3 HOH B 26 326 115 HOH HOH . G 3 HOH B 27 327 44 HOH HOH . G 3 HOH B 28 328 72 HOH HOH . G 3 HOH B 29 329 62 HOH HOH . G 3 HOH B 30 330 38 HOH HOH . G 3 HOH B 31 331 102 HOH HOH . G 3 HOH B 32 332 43 HOH HOH . G 3 HOH B 33 333 9 HOH HOH . G 3 HOH B 34 334 139 HOH HOH . G 3 HOH B 35 335 75 HOH HOH . G 3 HOH B 36 336 40 HOH HOH . G 3 HOH B 37 337 131 HOH HOH . G 3 HOH B 38 338 132 HOH HOH . G 3 HOH B 39 339 133 HOH HOH . G 3 HOH B 40 340 92 HOH HOH . G 3 HOH B 41 341 101 HOH HOH . G 3 HOH B 42 342 135 HOH HOH . G 3 HOH B 43 343 127 HOH HOH . G 3 HOH B 44 344 130 HOH HOH . G 3 HOH B 45 345 129 HOH HOH . G 3 HOH B 46 346 42 HOH HOH . G 3 HOH B 47 347 94 HOH HOH . G 3 HOH B 48 348 81 HOH HOH . G 3 HOH B 49 349 134 HOH HOH . G 3 HOH B 50 350 46 HOH HOH . G 3 HOH B 51 351 104 HOH HOH . G 3 HOH B 52 352 110 HOH HOH . G 3 HOH B 53 353 128 HOH HOH . G 3 HOH B 54 354 126 HOH HOH . G 3 HOH B 55 355 141 HOH HOH . G 3 HOH B 56 356 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 2 -25.836 23.61 0.862 1 78.03 ? OH2 1PE 201 A 1 HETATM 2 C C12 1PE . . . C 2 -25.462 24.07 2.104 1 75.37 ? C12 1PE 201 A 1 HETATM 3 C C22 1PE . . . C 2 -24.564 23.065 2.738 1 78.31 ? C22 1PE 201 A 1 HETATM 4 O OH3 1PE . . . C 2 -25.084 21.803 2.536 1 79.42 ? OH3 1PE 201 A 1 HETATM 5 C C13 1PE . . . C 2 -25.893 19.739 3.247 1 81.86 ? C13 1PE 201 A 1 HETATM 6 C C23 1PE . . . C 2 -25.953 21.218 3.431 1 76.28 ? C23 1PE 201 A 1 HETATM 7 O OH4 1PE . . . C 2 -26.883 19.103 3.97 1 94.17 ? OH4 1PE 201 A 1 HETATM 8 C C14 1PE . . . C 2 -28.936 17.987 3.985 1 99.84 ? C14 1PE 201 A 1 HETATM 9 C C24 1PE . . . C 2 -28.217 19.25 3.639 1 99.12 ? C24 1PE 201 A 1 HETATM 10 O OH5 1PE . . . C 2 -30.277 18.075 3.667 1 101.05 ? OH5 1PE 201 A 1 HETATM 11 C C15 1PE . . . C 2 -32.148 17.742 2.24 1 88.58 ? C15 1PE 201 A 1 HETATM 12 C C25 1PE . . . C 2 -30.754 17.337 2.601 1 96.41 ? C25 1PE 201 A 1 HETATM 13 O OH6 1PE . . . C 2 -32.118 18.868 1.442 1 79.1 ? OH6 1PE 201 A 1 HETATM 14 C C16 1PE . . . C 2 -32.886 20.264 -0.291 1 64.8 ? C16 1PE 201 A 1 HETATM 15 C C26 1PE . . . C 2 -33.228 19.196 0.697 1 69.82 ? C26 1PE 201 A 1 HETATM 16 O OH7 1PE . . . C 2 -32.669 21.472 0.345 1 61.64 ? OH7 1PE 201 A 1 HETATM 17 H HO2 1PE . . . C 2 -26.422 24.171 0.503 1 93.63 ? HO2 1PE 201 A 1 HETATM 18 H H121 1PE . . . C 2 -26.263 24.167 2.648 1 90.45 ? H121 1PE 201 A 1 HETATM 19 H H122 1PE . . . C 2 -25.009 24.928 2.033 1 90.45 ? H122 1PE 201 A 1 HETATM 20 H H221 1PE . . . C 2 -23.677 23.112 2.341 1 93.98 ? H221 1PE 201 A 1 HETATM 21 H H222 1PE . . . C 2 -24.504 23.252 3.691 1 93.98 ? H222 1PE 201 A 1 HETATM 22 H H131 1PE . . . C 2 -25.024 19.424 3.552 1 98.23 ? H131 1PE 201 A 1 HETATM 23 H H132 1PE . . . C 2 -26 19.527 2.304 1 98.23 ? H132 1PE 201 A 1 HETATM 24 H H231 1PE . . . C 2 -26.858 21.536 3.263 1 91.54 ? H231 1PE 201 A 1 HETATM 25 H H232 1PE . . . C 2 -25.69 21.443 4.34 1 91.54 ? H232 1PE 201 A 1 HETATM 26 H H141 1PE . . . C 2 -28.842 17.821 4.939 1 119.81 ? H141 1PE 201 A 1 HETATM 27 H H142 1PE . . . C 2 -28.544 17.245 3.493 1 119.81 ? H142 1PE 201 A 1 HETATM 28 H H241 1PE . . . C 2 -28.29 19.405 2.681 1 118.94 ? H241 1PE 201 A 1 HETATM 29 H H242 1PE . . . C 2 -28.603 20.001 4.122 1 118.94 ? H242 1PE 201 A 1 HETATM 30 H H151 1PE . . . C 2 -32.665 17.915 3.046 1 106.29 ? H151 1PE 201 A 1 HETATM 31 H H152 1PE . . . C 2 -32.563 17.018 1.739 1 106.29 ? H152 1PE 201 A 1 HETATM 32 H H251 1PE . . . C 2 -30.177 17.496 1.834 1 115.69 ? H251 1PE 201 A 1 HETATM 33 H H252 1PE . . . C 2 -30.737 16.39 2.822 1 115.69 ? H252 1PE 201 A 1 HETATM 34 H H161 1PE . . . C 2 -32.087 20.006 -0.783 1 77.76 ? H161 1PE 201 A 1 HETATM 35 H H162 1PE . . . C 2 -33.626 20.368 -0.914 1 77.76 ? H162 1PE 201 A 1 HETATM 36 H H261 1PE . . . C 2 -33.943 19.504 1.281 1 83.79 ? H261 1PE 201 A 1 HETATM 37 H H262 1PE . . . C 2 -33.525 18.404 0.215 1 83.79 ? H262 1PE 201 A 1 HETATM 38 H HO7 1PE . . . C 2 -32.41 22.077 -0.249 1 73.97 ? HO7 1PE 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #