data_5CK9 # _model_server_result.job_id NNKeCHTYG87aYe5_-qfZUg _model_server_result.datetime_utc '2024-11-29 03:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ck9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5CK9 # _exptl.entry_id 5CK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CK9 _cell.length_a 52.19 _cell.length_b 52.19 _cell.length_c 197.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5CK9 _atom_sites.fract_transf_matrix[1][1] 0.019161 _atom_sites.fract_transf_matrix[1][2] 0.011062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 201 230 1PE PE5 . D 2 1PE A 1 202 231 1PE PE5 . E 2 1PE B 1 201 229 1PE PE5 . F 3 HOH A 1 301 1 HOH HOH . F 3 HOH A 2 302 12 HOH HOH . F 3 HOH A 3 303 56 HOH HOH . F 3 HOH A 4 304 60 HOH HOH . F 3 HOH A 5 305 48 HOH HOH . F 3 HOH A 6 306 50 HOH HOH . F 3 HOH A 7 307 16 HOH HOH . F 3 HOH A 8 308 49 HOH HOH . F 3 HOH A 9 309 54 HOH HOH . F 3 HOH A 10 310 4 HOH HOH . F 3 HOH A 11 311 96 HOH HOH . F 3 HOH A 12 312 66 HOH HOH . F 3 HOH A 13 313 26 HOH HOH . F 3 HOH A 14 314 30 HOH HOH . F 3 HOH A 15 315 123 HOH HOH . F 3 HOH A 16 316 57 HOH HOH . F 3 HOH A 17 317 2 HOH HOH . F 3 HOH A 18 318 88 HOH HOH . F 3 HOH A 19 319 97 HOH HOH . F 3 HOH A 20 320 65 HOH HOH . F 3 HOH A 21 321 107 HOH HOH . F 3 HOH A 22 322 17 HOH HOH . F 3 HOH A 23 323 59 HOH HOH . F 3 HOH A 24 324 77 HOH HOH . F 3 HOH A 25 325 23 HOH HOH . F 3 HOH A 26 326 58 HOH HOH . F 3 HOH A 27 327 124 HOH HOH . F 3 HOH A 28 328 111 HOH HOH . F 3 HOH A 29 329 93 HOH HOH . F 3 HOH A 30 330 138 HOH HOH . F 3 HOH A 31 331 121 HOH HOH . F 3 HOH A 32 332 7 HOH HOH . F 3 HOH A 33 333 137 HOH HOH . F 3 HOH A 34 334 85 HOH HOH . F 3 HOH A 35 335 11 HOH HOH . F 3 HOH A 36 336 118 HOH HOH . F 3 HOH A 37 337 35 HOH HOH . F 3 HOH A 38 338 84 HOH HOH . F 3 HOH A 39 339 28 HOH HOH . F 3 HOH A 40 340 73 HOH HOH . F 3 HOH A 41 341 76 HOH HOH . F 3 HOH A 42 342 87 HOH HOH . F 3 HOH A 43 343 98 HOH HOH . F 3 HOH A 44 344 86 HOH HOH . F 3 HOH A 45 345 3 HOH HOH . F 3 HOH A 46 346 106 HOH HOH . F 3 HOH A 47 347 24 HOH HOH . F 3 HOH A 48 348 125 HOH HOH . F 3 HOH A 49 349 8 HOH HOH . F 3 HOH A 50 350 6 HOH HOH . F 3 HOH A 51 351 105 HOH HOH . F 3 HOH A 52 352 109 HOH HOH . F 3 HOH A 53 353 82 HOH HOH . F 3 HOH A 54 354 146 HOH HOH . F 3 HOH A 55 355 34 HOH HOH . F 3 HOH A 56 356 143 HOH HOH . G 3 HOH B 1 301 116 HOH HOH . G 3 HOH B 2 302 53 HOH HOH . G 3 HOH B 3 303 70 HOH HOH . G 3 HOH B 4 304 69 HOH HOH . G 3 HOH B 5 305 136 HOH HOH . G 3 HOH B 6 306 68 HOH HOH . G 3 HOH B 7 307 63 HOH HOH . G 3 HOH B 8 308 89 HOH HOH . G 3 HOH B 9 309 61 HOH HOH . G 3 HOH B 10 310 39 HOH HOH . G 3 HOH B 11 311 55 HOH HOH . G 3 HOH B 12 312 91 HOH HOH . G 3 HOH B 13 313 47 HOH HOH . G 3 HOH B 14 314 41 HOH HOH . G 3 HOH B 15 315 14 HOH HOH . G 3 HOH B 16 316 67 HOH HOH . G 3 HOH B 17 317 78 HOH HOH . G 3 HOH B 18 318 51 HOH HOH . G 3 HOH B 19 319 64 HOH HOH . G 3 HOH B 20 320 36 HOH HOH . G 3 HOH B 21 321 80 HOH HOH . G 3 HOH B 22 322 95 HOH HOH . G 3 HOH B 23 323 45 HOH HOH . G 3 HOH B 24 324 37 HOH HOH . G 3 HOH B 25 325 103 HOH HOH . G 3 HOH B 26 326 115 HOH HOH . G 3 HOH B 27 327 44 HOH HOH . G 3 HOH B 28 328 72 HOH HOH . G 3 HOH B 29 329 62 HOH HOH . G 3 HOH B 30 330 38 HOH HOH . G 3 HOH B 31 331 102 HOH HOH . G 3 HOH B 32 332 43 HOH HOH . G 3 HOH B 33 333 9 HOH HOH . G 3 HOH B 34 334 139 HOH HOH . G 3 HOH B 35 335 75 HOH HOH . G 3 HOH B 36 336 40 HOH HOH . G 3 HOH B 37 337 131 HOH HOH . G 3 HOH B 38 338 132 HOH HOH . G 3 HOH B 39 339 133 HOH HOH . G 3 HOH B 40 340 92 HOH HOH . G 3 HOH B 41 341 101 HOH HOH . G 3 HOH B 42 342 135 HOH HOH . G 3 HOH B 43 343 127 HOH HOH . G 3 HOH B 44 344 130 HOH HOH . G 3 HOH B 45 345 129 HOH HOH . G 3 HOH B 46 346 42 HOH HOH . G 3 HOH B 47 347 94 HOH HOH . G 3 HOH B 48 348 81 HOH HOH . G 3 HOH B 49 349 134 HOH HOH . G 3 HOH B 50 350 46 HOH HOH . G 3 HOH B 51 351 104 HOH HOH . G 3 HOH B 52 352 110 HOH HOH . G 3 HOH B 53 353 128 HOH HOH . G 3 HOH B 54 354 126 HOH HOH . G 3 HOH B 55 355 141 HOH HOH . G 3 HOH B 56 356 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 2 2.629 8.863 14.552 1 81.28 ? OH2 1PE 201 B 1 HETATM 2 C C12 1PE . . . E 2 2.085 9.66 13.564 1 76.36 ? C12 1PE 201 B 1 HETATM 3 C C22 1PE . . . E 2 3.097 10.679 13.155 1 76.03 ? C22 1PE 201 B 1 HETATM 4 O OH3 1PE . . . E 2 2.564 11.571 12.246 1 80.47 ? OH3 1PE 201 B 1 HETATM 5 C C13 1PE . . . E 2 2.427 13.897 11.875 1 65.45 ? C13 1PE 201 B 1 HETATM 6 C C23 1PE . . . E 2 1.968 12.734 12.692 1 75.99 ? C23 1PE 201 B 1 HETATM 7 O OH4 1PE . . . E 2 2.056 15.091 12.47 1 61.13 ? OH4 1PE 201 B 1 HETATM 8 C C14 1PE . . . E 2 0.771 16.502 13.848 1 56.61 ? C14 1PE 201 B 1 HETATM 9 C C24 1PE . . . E 2 0.762 15.368 12.87 1 51.57 ? C24 1PE 201 B 1 HETATM 10 O OH5 1PE . . . E 2 1.365 16.086 15.023 1 67.63 ? OH5 1PE 201 B 1 HETATM 11 C C15 1PE . . . E 2 1.795 16.024 17.32 1 64.41 ? C15 1PE 201 B 1 HETATM 12 C C25 1PE . . . E 2 1.436 16.884 16.148 1 64.49 ? C25 1PE 201 B 1 HETATM 13 O OH6 1PE . . . E 2 3.101 15.574 17.222 1 67.55 ? OH6 1PE 201 B 1 HETATM 14 C C16 1PE . . . E 2 4.59 13.713 17.232 1 71.34 ? C16 1PE 201 B 1 HETATM 15 C C26 1PE . . . E 2 3.488 14.45 17.927 1 65.69 ? C26 1PE 201 B 1 HETATM 16 O OH7 1PE . . . E 2 5.643 14.559 16.93 1 72.28 ? OH7 1PE 201 B 1 HETATM 17 H HO2 1PE . . . E 2 3.321 8.415 14.223 1 97.53 ? HO2 1PE 201 B 1 HETATM 18 H H121 1PE . . . E 2 1.298 10.11 13.917 1 91.63 ? H121 1PE 201 B 1 HETATM 19 H H122 1PE . . . E 2 1.833 9.117 12.797 1 91.63 ? H122 1PE 201 B 1 HETATM 20 H H221 1PE . . . E 2 3.859 10.225 12.756 1 91.24 ? H221 1PE 201 B 1 HETATM 21 H H222 1PE . . . E 2 3.394 11.171 13.94 1 91.24 ? H222 1PE 201 B 1 HETATM 22 H H131 1PE . . . E 2 2.041 13.84 10.984 1 78.54 ? H131 1PE 201 B 1 HETATM 23 H H132 1PE . . . E 2 3.398 13.866 11.813 1 78.54 ? H132 1PE 201 B 1 HETATM 24 H H231 1PE . . . E 2 2.22 12.882 13.62 1 91.18 ? H231 1PE 201 B 1 HETATM 25 H H232 1PE . . . E 2 1.001 12.652 12.63 1 91.18 ? H232 1PE 201 B 1 HETATM 26 H H141 1PE . . . E 2 -0.141 16.79 14.03 1 67.93 ? H141 1PE 201 B 1 HETATM 27 H H142 1PE . . . E 2 1.271 17.252 13.481 1 67.93 ? H142 1PE 201 B 1 HETATM 28 H H241 1PE . . . E 2 0.374 14.581 13.291 1 61.88 ? H241 1PE 201 B 1 HETATM 29 H H242 1PE . . . E 2 0.232 15.614 12.092 1 61.88 ? H242 1PE 201 B 1 HETATM 30 H H151 1PE . . . E 2 1.195 15.258 17.344 1 77.29 ? H151 1PE 201 B 1 HETATM 31 H H152 1PE . . . E 2 1.693 16.537 18.14 1 77.29 ? H152 1PE 201 B 1 HETATM 32 H H251 1PE . . . E 2 2.127 17.556 16.015 1 77.39 ? H251 1PE 201 B 1 HETATM 33 H H252 1PE . . . E 2 0.581 17.321 16.308 1 77.39 ? H252 1PE 201 B 1 HETATM 34 H H161 1PE . . . E 2 4.907 12.993 17.804 1 85.61 ? H161 1PE 201 B 1 HETATM 35 H H162 1PE . . . E 2 4.245 13.335 16.404 1 85.61 ? H162 1PE 201 B 1 HETATM 36 H H261 1PE . . . E 2 2.722 13.855 18.008 1 78.82 ? H261 1PE 201 B 1 HETATM 37 H H262 1PE . . . E 2 3.782 14.711 18.817 1 78.82 ? H262 1PE 201 B 1 HETATM 38 H HO7 1PE . . . E 2 6.307 14.089 16.575 1 86.74 ? HO7 1PE 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #