data_5CK9 # _model_server_result.job_id Dny3NqS8Hrzgbh6E2vnPug _model_server_result.datetime_utc '2025-02-18 04:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ck9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5CK9 # _exptl.entry_id 5CK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CK9 _cell.length_a 52.19 _cell.length_b 52.19 _cell.length_c 197.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5CK9 _atom_sites.fract_transf_matrix[1][1] 0.019161 _atom_sites.fract_transf_matrix[1][2] 0.011062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 201 230 1PE PE5 . D 2 1PE A 1 202 231 1PE PE5 . E 2 1PE B 1 201 229 1PE PE5 . F 3 HOH A 1 301 1 HOH HOH . F 3 HOH A 2 302 12 HOH HOH . F 3 HOH A 3 303 56 HOH HOH . F 3 HOH A 4 304 60 HOH HOH . F 3 HOH A 5 305 48 HOH HOH . F 3 HOH A 6 306 50 HOH HOH . F 3 HOH A 7 307 16 HOH HOH . F 3 HOH A 8 308 49 HOH HOH . F 3 HOH A 9 309 54 HOH HOH . F 3 HOH A 10 310 4 HOH HOH . F 3 HOH A 11 311 96 HOH HOH . F 3 HOH A 12 312 66 HOH HOH . F 3 HOH A 13 313 26 HOH HOH . F 3 HOH A 14 314 30 HOH HOH . F 3 HOH A 15 315 123 HOH HOH . F 3 HOH A 16 316 57 HOH HOH . F 3 HOH A 17 317 2 HOH HOH . F 3 HOH A 18 318 88 HOH HOH . F 3 HOH A 19 319 97 HOH HOH . F 3 HOH A 20 320 65 HOH HOH . F 3 HOH A 21 321 107 HOH HOH . F 3 HOH A 22 322 17 HOH HOH . F 3 HOH A 23 323 59 HOH HOH . F 3 HOH A 24 324 77 HOH HOH . F 3 HOH A 25 325 23 HOH HOH . F 3 HOH A 26 326 58 HOH HOH . F 3 HOH A 27 327 124 HOH HOH . F 3 HOH A 28 328 111 HOH HOH . F 3 HOH A 29 329 93 HOH HOH . F 3 HOH A 30 330 138 HOH HOH . F 3 HOH A 31 331 121 HOH HOH . F 3 HOH A 32 332 7 HOH HOH . F 3 HOH A 33 333 137 HOH HOH . F 3 HOH A 34 334 85 HOH HOH . F 3 HOH A 35 335 11 HOH HOH . F 3 HOH A 36 336 118 HOH HOH . F 3 HOH A 37 337 35 HOH HOH . F 3 HOH A 38 338 84 HOH HOH . F 3 HOH A 39 339 28 HOH HOH . F 3 HOH A 40 340 73 HOH HOH . F 3 HOH A 41 341 76 HOH HOH . F 3 HOH A 42 342 87 HOH HOH . F 3 HOH A 43 343 98 HOH HOH . F 3 HOH A 44 344 86 HOH HOH . F 3 HOH A 45 345 3 HOH HOH . F 3 HOH A 46 346 106 HOH HOH . F 3 HOH A 47 347 24 HOH HOH . F 3 HOH A 48 348 125 HOH HOH . F 3 HOH A 49 349 8 HOH HOH . F 3 HOH A 50 350 6 HOH HOH . F 3 HOH A 51 351 105 HOH HOH . F 3 HOH A 52 352 109 HOH HOH . F 3 HOH A 53 353 82 HOH HOH . F 3 HOH A 54 354 146 HOH HOH . F 3 HOH A 55 355 34 HOH HOH . F 3 HOH A 56 356 143 HOH HOH . G 3 HOH B 1 301 116 HOH HOH . G 3 HOH B 2 302 53 HOH HOH . G 3 HOH B 3 303 70 HOH HOH . G 3 HOH B 4 304 69 HOH HOH . G 3 HOH B 5 305 136 HOH HOH . G 3 HOH B 6 306 68 HOH HOH . G 3 HOH B 7 307 63 HOH HOH . G 3 HOH B 8 308 89 HOH HOH . G 3 HOH B 9 309 61 HOH HOH . G 3 HOH B 10 310 39 HOH HOH . G 3 HOH B 11 311 55 HOH HOH . G 3 HOH B 12 312 91 HOH HOH . G 3 HOH B 13 313 47 HOH HOH . G 3 HOH B 14 314 41 HOH HOH . G 3 HOH B 15 315 14 HOH HOH . G 3 HOH B 16 316 67 HOH HOH . G 3 HOH B 17 317 78 HOH HOH . G 3 HOH B 18 318 51 HOH HOH . G 3 HOH B 19 319 64 HOH HOH . G 3 HOH B 20 320 36 HOH HOH . G 3 HOH B 21 321 80 HOH HOH . G 3 HOH B 22 322 95 HOH HOH . G 3 HOH B 23 323 45 HOH HOH . G 3 HOH B 24 324 37 HOH HOH . G 3 HOH B 25 325 103 HOH HOH . G 3 HOH B 26 326 115 HOH HOH . G 3 HOH B 27 327 44 HOH HOH . G 3 HOH B 28 328 72 HOH HOH . G 3 HOH B 29 329 62 HOH HOH . G 3 HOH B 30 330 38 HOH HOH . G 3 HOH B 31 331 102 HOH HOH . G 3 HOH B 32 332 43 HOH HOH . G 3 HOH B 33 333 9 HOH HOH . G 3 HOH B 34 334 139 HOH HOH . G 3 HOH B 35 335 75 HOH HOH . G 3 HOH B 36 336 40 HOH HOH . G 3 HOH B 37 337 131 HOH HOH . G 3 HOH B 38 338 132 HOH HOH . G 3 HOH B 39 339 133 HOH HOH . G 3 HOH B 40 340 92 HOH HOH . G 3 HOH B 41 341 101 HOH HOH . G 3 HOH B 42 342 135 HOH HOH . G 3 HOH B 43 343 127 HOH HOH . G 3 HOH B 44 344 130 HOH HOH . G 3 HOH B 45 345 129 HOH HOH . G 3 HOH B 46 346 42 HOH HOH . G 3 HOH B 47 347 94 HOH HOH . G 3 HOH B 48 348 81 HOH HOH . G 3 HOH B 49 349 134 HOH HOH . G 3 HOH B 50 350 46 HOH HOH . G 3 HOH B 51 351 104 HOH HOH . G 3 HOH B 52 352 110 HOH HOH . G 3 HOH B 53 353 128 HOH HOH . G 3 HOH B 54 354 126 HOH HOH . G 3 HOH B 55 355 141 HOH HOH . G 3 HOH B 56 356 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 2 -7.463 24.903 -4.534 1 60.63 ? OH2 1PE 202 A 1 HETATM 2 C C12 1PE . . . D 2 -7.484 23.573 -4.897 1 61.9 ? C12 1PE 202 A 1 HETATM 3 C C22 1PE . . . D 2 -7.628 23.465 -6.374 1 75.52 ? C22 1PE 202 A 1 HETATM 4 O OH3 1PE . . . D 2 -8.286 22.289 -6.668 1 89.32 ? OH3 1PE 202 A 1 HETATM 5 C C13 1PE . . . D 2 -10.184 21.018 -7.275 1 89.66 ? C13 1PE 202 A 1 HETATM 6 C C23 1PE . . . D 2 -9.637 22.367 -6.951 1 93.38 ? C23 1PE 202 A 1 HETATM 7 O OH4 1PE . . . D 2 -11.53 21.097 -7.578 1 86.58 ? OH4 1PE 202 A 1 HETATM 8 C C14 1PE . . . D 2 -13.735 21.9 -7.621 1 79.87 ? C14 1PE 202 A 1 HETATM 9 C C24 1PE . . . D 2 -12.324 22.16 -7.184 1 82.32 ? C24 1PE 202 A 1 HETATM 10 O OH5 1PE . . . D 2 -14.65 22.713 -6.976 1 76.69 ? OH5 1PE 202 A 1 HETATM 11 C C15 1PE . . . D 2 -16.595 24.036 -6.761 1 60.23 ? C15 1PE 202 A 1 HETATM 12 C C25 1PE . . . D 2 -15.697 23.277 -7.68 1 68.5 ? C25 1PE 202 A 1 HETATM 13 O OH6 1PE . . . D 2 -15.803 24.815 -5.954 1 71.57 ? OH6 1PE 202 A 1 HETATM 14 C C16 1PE . . . D 2 -14.877 26.732 -5.094 1 80.7 ? C16 1PE 202 A 1 HETATM 15 C C26 1PE . . . D 2 -16.13 26.108 -5.614 1 74.71 ? C26 1PE 202 A 1 HETATM 16 O OH7 1PE . . . D 2 -15.022 28.099 -4.997 1 84.53 ? OH7 1PE 202 A 1 HETATM 17 H HO2 1PE . . . D 2 -7.442 24.968 -3.65 1 72.76 ? HO2 1PE 202 A 1 HETATM 18 H H121 1PE . . . D 2 -8.254 23.154 -4.474 1 74.28 ? H121 1PE 202 A 1 HETATM 19 H H122 1PE . . . D 2 -6.671 23.124 -4.606 1 74.28 ? H122 1PE 202 A 1 HETATM 20 H H221 1PE . . . D 2 -8.18 24.206 -6.68 1 90.63 ? H221 1PE 202 A 1 HETATM 21 H H222 1PE . . . D 2 -6.761 23.502 -6.815 1 90.63 ? H222 1PE 202 A 1 HETATM 22 H H131 1PE . . . D 2 -10.063 20.435 -6.505 1 107.59 ? H131 1PE 202 A 1 HETATM 23 H H132 1PE . . . D 2 -9.7 20.657 -8.039 1 107.59 ? H132 1PE 202 A 1 HETATM 24 H H231 1PE . . . D 2 -9.775 22.961 -7.71 1 112.06 ? H231 1PE 202 A 1 HETATM 25 H H232 1PE . . . D 2 -10.104 22.723 -6.176 1 112.06 ? H232 1PE 202 A 1 HETATM 26 H H141 1PE . . . D 2 -13.954 20.973 -7.42 1 95.85 ? H141 1PE 202 A 1 HETATM 27 H H142 1PE . . . D 2 -13.808 22.034 -8.582 1 95.85 ? H142 1PE 202 A 1 HETATM 28 H H241 1PE . . . D 2 -11.999 22.983 -7.589 1 98.79 ? H241 1PE 202 A 1 HETATM 29 H H242 1PE . . . D 2 -12.296 22.24 -6.215 1 98.79 ? H242 1PE 202 A 1 HETATM 30 H H151 1PE . . . D 2 -17.109 23.421 -6.21 1 72.28 ? H151 1PE 202 A 1 HETATM 31 H H152 1PE . . . D 2 -17.198 24.593 -7.284 1 72.28 ? H152 1PE 202 A 1 HETATM 32 H H251 1PE . . . D 2 -15.323 23.894 -8.332 1 82.2 ? H251 1PE 202 A 1 HETATM 33 H H252 1PE . . . D 2 -16.204 22.588 -8.144 1 82.2 ? H252 1PE 202 A 1 HETATM 34 H H161 1PE . . . D 2 -14.667 26.36 -4.22 1 96.84 ? H161 1PE 202 A 1 HETATM 35 H H162 1PE . . . D 2 -14.149 26.539 -5.709 1 96.84 ? H162 1PE 202 A 1 HETATM 36 H H261 1PE . . . D 2 -16.825 26.119 -4.933 1 89.65 ? H261 1PE 202 A 1 HETATM 37 H H262 1PE . . . D 2 -16.43 26.586 -6.406 1 89.65 ? H262 1PE 202 A 1 HETATM 38 H HO7 1PE . . . D 2 -14.292 28.448 -4.632 1 101.44 ? HO7 1PE 202 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #