data_5CKU # _model_server_result.job_id tTYhCo-CQkuTghkuX8bPtg _model_server_result.datetime_utc '2024-10-17 05:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5CKU # _exptl.entry_id 5CKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CKU _cell.length_a 77.081 _cell.length_b 84.002 _cell.length_c 145.057 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.081 -84.002 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.081 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -84.002 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 341 n n PA O2A NAP sing 342 n n PA O5B NAP sing 343 n n PA O3 NAP sing 344 n n O2A HOA2 NAP sing 345 n n O5B C5B NAP sing 346 n n C5B C4B NAP sing 347 n n C5B H51A NAP sing 348 n n C5B H52A NAP sing 349 n n C4B O4B NAP sing 350 n n C4B C3B NAP sing 351 n n C4B H4B NAP sing 352 n n O4B C1B NAP sing 353 n n C3B O3B NAP sing 354 n n C3B C2B NAP sing 355 n n C3B H3B NAP sing 356 n n O3B HO3A NAP sing 357 n n C2B O2B NAP sing 358 n n C2B C1B NAP sing 359 n n C2B H2B NAP sing 360 n n O2B P2B NAP sing 361 n n C1B N9A NAP sing 362 n n C1B H1B NAP sing 363 n n N9A C8A NAP sing 364 n y N9A C4A NAP sing 365 n y C8A N7A NAP doub 366 n y C8A H8A NAP sing 367 n n N7A C5A NAP sing 368 n y C5A C6A NAP sing 369 n y C5A C4A NAP doub 370 n y C6A N6A NAP sing 371 n n C6A N1A NAP doub 372 n y N6A H61A NAP sing 373 n n N6A H62A NAP sing 374 n n N1A C2A NAP sing 375 n y C2A N3A NAP doub 376 n y C2A H2A NAP sing 377 n n N3A C4A NAP sing 378 n y O3 PN NAP sing 379 n n PN O1N NAP doub 380 n n PN O2N NAP sing 381 n n PN O5D NAP sing 382 n n O5D C5D NAP sing 383 n n C5D C4D NAP sing 384 n n C5D H51N NAP sing 385 n n C5D H52N NAP sing 386 n n C4D O4D NAP sing 387 n n C4D C3D NAP sing 388 n n C4D H4D NAP sing 389 n n O4D C1D NAP sing 390 n n C3D O3D NAP sing 391 n n C3D C2D NAP sing 392 n n C3D H3D NAP sing 393 n n O3D HO3N NAP sing 394 n n C2D O2D NAP sing 395 n n C2D C1D NAP sing 396 n n C2D H2D NAP sing 397 n n O2D HO2N NAP sing 398 n n C1D N1N NAP sing 399 n n C1D H1D NAP sing 400 n n N1N C2N NAP sing 401 n y N1N C6N NAP doub 402 n y C2N C3N NAP doub 403 n y C2N H2N NAP sing 404 n n C3N C7N NAP sing 405 n n C3N C4N NAP sing 406 n y C7N O7N NAP doub 407 n n C7N N7N NAP sing 408 n n N7N H71N NAP sing 409 n n N7N H72N NAP sing 410 n n C4N C5N NAP doub 411 n y C4N H4N NAP sing 412 n n C5N C6N NAP sing 413 n y C5N H5N NAP sing 414 n n C6N H6N NAP sing 415 n n P2B O1X NAP doub 416 n n P2B O2X NAP sing 417 n n P2B O3X NAP sing 418 n n O2X HOP2 NAP sing 419 n n O3X HOP3 NAP sing 420 n n # _atom_sites.entry_id 5CKU _atom_sites.fract_transf_matrix[1][1] 0.012973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1492 FAD FAD . C 3 NAP A 1 602 1493 NAP NAP . D 4 ORN A 1 603 1494 ORN ORN . E 5 SO4 A 1 604 1 SO4 SO4 . F 5 SO4 A 1 605 1 SO4 SO4 . G 5 SO4 A 1 606 1 SO4 SO4 . H 6 GOL A 1 607 1 GOL GOL . I 7 HOH A 1 701 6 HOH HOH . I 7 HOH A 2 702 234 HOH HOH . I 7 HOH A 3 703 231 HOH HOH . I 7 HOH A 4 704 168 HOH HOH . I 7 HOH A 5 705 173 HOH HOH . I 7 HOH A 6 706 53 HOH HOH . I 7 HOH A 7 707 162 HOH HOH . I 7 HOH A 8 708 36 HOH HOH . I 7 HOH A 9 709 171 HOH HOH . I 7 HOH A 10 710 17 HOH HOH . I 7 HOH A 11 711 172 HOH HOH . I 7 HOH A 12 712 230 HOH HOH . I 7 HOH A 13 713 222 HOH HOH . I 7 HOH A 14 714 78 HOH HOH . I 7 HOH A 15 715 1 HOH HOH . I 7 HOH A 16 716 107 HOH HOH . I 7 HOH A 17 717 117 HOH HOH . I 7 HOH A 18 718 2 HOH HOH . I 7 HOH A 19 719 79 HOH HOH . I 7 HOH A 20 720 38 HOH HOH . I 7 HOH A 21 721 169 HOH HOH . I 7 HOH A 22 722 84 HOH HOH . I 7 HOH A 23 723 187 HOH HOH . I 7 HOH A 24 724 9 HOH HOH . I 7 HOH A 25 725 58 HOH HOH . I 7 HOH A 26 726 157 HOH HOH . I 7 HOH A 27 727 30 HOH HOH . I 7 HOH A 28 728 121 HOH HOH . I 7 HOH A 29 729 178 HOH HOH . I 7 HOH A 30 730 70 HOH HOH . I 7 HOH A 31 731 93 HOH HOH . I 7 HOH A 32 732 15 HOH HOH . I 7 HOH A 33 733 7 HOH HOH . I 7 HOH A 34 734 74 HOH HOH . I 7 HOH A 35 735 21 HOH HOH . I 7 HOH A 36 736 164 HOH HOH . I 7 HOH A 37 737 60 HOH HOH . I 7 HOH A 38 738 174 HOH HOH . I 7 HOH A 39 739 140 HOH HOH . I 7 HOH A 40 740 23 HOH HOH . I 7 HOH A 41 741 144 HOH HOH . I 7 HOH A 42 742 96 HOH HOH . I 7 HOH A 43 743 65 HOH HOH . I 7 HOH A 44 744 33 HOH HOH . I 7 HOH A 45 745 71 HOH HOH . I 7 HOH A 46 746 80 HOH HOH . I 7 HOH A 47 747 69 HOH HOH . I 7 HOH A 48 748 100 HOH HOH . I 7 HOH A 49 749 46 HOH HOH . I 7 HOH A 50 750 19 HOH HOH . I 7 HOH A 51 751 104 HOH HOH . I 7 HOH A 52 752 221 HOH HOH . I 7 HOH A 53 753 24 HOH HOH . I 7 HOH A 54 754 83 HOH HOH . I 7 HOH A 55 755 55 HOH HOH . I 7 HOH A 56 756 37 HOH HOH . I 7 HOH A 57 757 165 HOH HOH . I 7 HOH A 58 758 54 HOH HOH . I 7 HOH A 59 759 41 HOH HOH . I 7 HOH A 60 760 12 HOH HOH . I 7 HOH A 61 761 143 HOH HOH . I 7 HOH A 62 762 42 HOH HOH . I 7 HOH A 63 763 28 HOH HOH . I 7 HOH A 64 764 75 HOH HOH . I 7 HOH A 65 765 149 HOH HOH . I 7 HOH A 66 766 35 HOH HOH . I 7 HOH A 67 767 22 HOH HOH . I 7 HOH A 68 768 59 HOH HOH . I 7 HOH A 69 769 119 HOH HOH . I 7 HOH A 70 770 44 HOH HOH . I 7 HOH A 71 771 218 HOH HOH . I 7 HOH A 72 772 18 HOH HOH . I 7 HOH A 73 773 111 HOH HOH . I 7 HOH A 74 774 56 HOH HOH . I 7 HOH A 75 775 25 HOH HOH . I 7 HOH A 76 776 43 HOH HOH . I 7 HOH A 77 777 177 HOH HOH . I 7 HOH A 78 778 39 HOH HOH . I 7 HOH A 79 779 182 HOH HOH . I 7 HOH A 80 780 3 HOH HOH . I 7 HOH A 81 781 166 HOH HOH . I 7 HOH A 82 782 64 HOH HOH . I 7 HOH A 83 783 183 HOH HOH . I 7 HOH A 84 784 116 HOH HOH . I 7 HOH A 85 785 57 HOH HOH . I 7 HOH A 86 786 61 HOH HOH . I 7 HOH A 87 787 158 HOH HOH . I 7 HOH A 88 788 233 HOH HOH . I 7 HOH A 89 789 5 HOH HOH . I 7 HOH A 90 790 147 HOH HOH . I 7 HOH A 91 791 152 HOH HOH . I 7 HOH A 92 792 134 HOH HOH . I 7 HOH A 93 793 199 HOH HOH . I 7 HOH A 94 794 29 HOH HOH . I 7 HOH A 95 795 10 HOH HOH . I 7 HOH A 96 796 68 HOH HOH . I 7 HOH A 97 797 97 HOH HOH . I 7 HOH A 98 798 16 HOH HOH . I 7 HOH A 99 799 66 HOH HOH . I 7 HOH A 100 800 32 HOH HOH . I 7 HOH A 101 801 135 HOH HOH . I 7 HOH A 102 802 52 HOH HOH . I 7 HOH A 103 803 223 HOH HOH . I 7 HOH A 104 804 98 HOH HOH . I 7 HOH A 105 805 198 HOH HOH . I 7 HOH A 106 806 49 HOH HOH . I 7 HOH A 107 807 94 HOH HOH . I 7 HOH A 108 808 141 HOH HOH . I 7 HOH A 109 809 115 HOH HOH . I 7 HOH A 110 810 8 HOH HOH . I 7 HOH A 111 811 40 HOH HOH . I 7 HOH A 112 812 148 HOH HOH . I 7 HOH A 113 813 108 HOH HOH . I 7 HOH A 114 814 92 HOH HOH . I 7 HOH A 115 815 13 HOH HOH . I 7 HOH A 116 816 106 HOH HOH . I 7 HOH A 117 817 184 HOH HOH . I 7 HOH A 118 818 82 HOH HOH . I 7 HOH A 119 819 113 HOH HOH . I 7 HOH A 120 820 197 HOH HOH . I 7 HOH A 121 821 136 HOH HOH . I 7 HOH A 122 822 154 HOH HOH . I 7 HOH A 123 823 85 HOH HOH . I 7 HOH A 124 824 14 HOH HOH . I 7 HOH A 125 825 180 HOH HOH . I 7 HOH A 126 826 11 HOH HOH . I 7 HOH A 127 827 229 HOH HOH . I 7 HOH A 128 828 4 HOH HOH . I 7 HOH A 129 829 90 HOH HOH . I 7 HOH A 130 830 112 HOH HOH . I 7 HOH A 131 831 228 HOH HOH . I 7 HOH A 132 832 139 HOH HOH . I 7 HOH A 133 833 76 HOH HOH . I 7 HOH A 134 834 129 HOH HOH . I 7 HOH A 135 835 31 HOH HOH . I 7 HOH A 136 836 73 HOH HOH . I 7 HOH A 137 837 87 HOH HOH . I 7 HOH A 138 838 45 HOH HOH . I 7 HOH A 139 839 50 HOH HOH . I 7 HOH A 140 840 118 HOH HOH . I 7 HOH A 141 841 34 HOH HOH . I 7 HOH A 142 842 86 HOH HOH . I 7 HOH A 143 843 77 HOH HOH . I 7 HOH A 144 844 170 HOH HOH . I 7 HOH A 145 845 122 HOH HOH . I 7 HOH A 146 846 105 HOH HOH . I 7 HOH A 147 847 20 HOH HOH . I 7 HOH A 148 848 179 HOH HOH . I 7 HOH A 149 849 27 HOH HOH . I 7 HOH A 150 850 232 HOH HOH . I 7 HOH A 151 851 72 HOH HOH . I 7 HOH A 152 852 224 HOH HOH . I 7 HOH A 153 853 26 HOH HOH . I 7 HOH A 154 854 47 HOH HOH . I 7 HOH A 155 855 114 HOH HOH . I 7 HOH A 156 856 209 HOH HOH . I 7 HOH A 157 857 62 HOH HOH . I 7 HOH A 158 858 123 HOH HOH . I 7 HOH A 159 859 63 HOH HOH . I 7 HOH A 160 860 101 HOH HOH . I 7 HOH A 161 861 159 HOH HOH . I 7 HOH A 162 862 181 HOH HOH . I 7 HOH A 163 863 193 HOH HOH . I 7 HOH A 164 864 137 HOH HOH . I 7 HOH A 165 865 205 HOH HOH . I 7 HOH A 166 866 91 HOH HOH . I 7 HOH A 167 867 102 HOH HOH . I 7 HOH A 168 868 99 HOH HOH . I 7 HOH A 169 869 51 HOH HOH . I 7 HOH A 170 870 67 HOH HOH . I 7 HOH A 171 871 195 HOH HOH . I 7 HOH A 172 872 227 HOH HOH . I 7 HOH A 173 873 225 HOH HOH . I 7 HOH A 174 874 163 HOH HOH . I 7 HOH A 175 875 128 HOH HOH . I 7 HOH A 176 876 226 HOH HOH . I 7 HOH A 177 877 175 HOH HOH . I 7 HOH A 178 878 81 HOH HOH . I 7 HOH A 179 879 88 HOH HOH . I 7 HOH A 180 880 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -16.101 -29.235 7.066 1 37.53 ? PA NAP 602 A 1 HETATM 2 O O1A NAP . . . C 3 -16.985 -30.473 7.101 1 33.44 ? O1A NAP 602 A 1 HETATM 3 O O2A NAP . . . C 3 -14.743 -29.501 7.735 1 41.49 ? O2A NAP 602 A 1 HETATM 4 O O5B NAP . . . C 3 -15.853 -28.796 5.561 1 28.88 ? O5B NAP 602 A 1 HETATM 5 C C5B NAP . . . C 3 -14.924 -27.771 5.282 1 31.07 ? C5B NAP 602 A 1 HETATM 6 C C4B NAP . . . C 3 -15.027 -27.375 3.789 1 31.56 ? C4B NAP 602 A 1 HETATM 7 O O4B NAP . . . C 3 -14.286 -26.313 3.555 1 35.16 ? O4B NAP 602 A 1 HETATM 8 C C3B NAP . . . C 3 -14.466 -28.483 2.918 1 32.05 ? C3B NAP 602 A 1 HETATM 9 O O3B NAP . . . C 3 -15.17 -28.611 1.781 1 36.56 ? O3B NAP 602 A 1 HETATM 10 C C2B NAP . . . C 3 -12.988 -28.017 2.638 1 44.25 ? C2B NAP 602 A 1 HETATM 11 O O2B NAP . . . C 3 -12.489 -28.543 1.314 1 49.6 ? O2B NAP 602 A 1 HETATM 12 C C1B NAP . . . C 3 -13.018 -26.747 2.608 1 36.84 ? C1B NAP 602 A 1 HETATM 13 N N9A NAP . . . C 3 -11.802 -26.269 3.166 1 34.62 ? N9A NAP 602 A 1 HETATM 14 C C8A NAP . . . C 3 -11.183 -26.424 4.394 1 32.33 ? C8A NAP 602 A 1 HETATM 15 N N7A NAP . . . C 3 -10.021 -25.751 4.339 1 35.47 ? N7A NAP 602 A 1 HETATM 16 C C5A NAP . . . C 3 -9.894 -25.197 3.085 1 39.53 ? C5A NAP 602 A 1 HETATM 17 C C6A NAP . . . C 3 -8.899 -24.408 2.512 1 42.29 ? C6A NAP 602 A 1 HETATM 18 N N6A NAP . . . C 3 -7.617 -23.863 2.952 1 45.36 ? N6A NAP 602 A 1 HETATM 19 N N1A NAP . . . C 3 -9.02 -23.983 1.256 1 40.31 ? N1A NAP 602 A 1 HETATM 20 C C2A NAP . . . C 3 -10.149 -24.315 0.502 1 32.48 ? C2A NAP 602 A 1 HETATM 21 N N3A NAP . . . C 3 -11.126 -25.077 1.076 1 32.1 ? N3A NAP 602 A 1 HETATM 22 C C4A NAP . . . C 3 -10.993 -25.517 2.355 1 37.22 ? C4A NAP 602 A 1 HETATM 23 O O3 NAP . . . C 3 -16.868 -27.921 7.778 1 46.63 ? O3 NAP 602 A 1 HETATM 24 P PN NAP . . . C 3 -18.455 -27.749 8.088 1 38.89 ? PN NAP 602 A 1 HETATM 25 O O1N NAP . . . C 3 -19.293 -27.768 6.801 1 36.19 ? O1N NAP 602 A 1 HETATM 26 O O2N NAP . . . C 3 -18.642 -26.454 8.87 1 35.64 ? O2N NAP 602 A 1 HETATM 27 O O5D NAP . . . C 3 -18.903 -28.968 9.008 1 45.47 ? O5D NAP 602 A 1 HETATM 28 P P2B NAP . . . C 3 -12.167 -30.071 1.121 1 58.52 ? P2B NAP 602 A 1 HETATM 29 O O1X NAP . . . C 3 -11.331 -30.27 -0.161 1 60.49 ? O1X NAP 602 A 1 HETATM 30 O O2X NAP . . . C 3 -13.529 -30.819 0.932 1 66.02 ? O2X NAP 602 A 1 HETATM 31 O O3X NAP . . . C 3 -11.397 -30.545 2.347 1 48.57 ? O3X NAP 602 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #