data_5CKV # _model_server_result.job_id hd0Y3GRptnbV6z1P0lUW2w _model_server_result.datetime_utc '2024-11-18 21:52:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ckv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":509}' # _entry.id 5CKV # _exptl.entry_id 5CKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CKV _cell.length_a 204.76 _cell.length_b 204.76 _cell.length_c 66.774 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.516 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 97 A CYS 87 1_555 J MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A NE2 HIS 379 A HIS 369 1_555 J MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A OE2 GLU 421 A GLU 411 1_555 J MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A OD2 ASP 451 A ASP 441 1_555 J MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 J MN MN . A MN 508 1_555 V O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 B SG CYS 97 B CYS 87 1_555 M MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc7 B NE2 HIS 379 B HIS 369 1_555 M MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 B OE2 GLU 421 B GLU 411 1_555 M MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 B OD2 ASP 451 B ASP 441 1_555 M MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 250 n n N H PHE sing 251 n n N H2 PHE sing 252 n n CA C PHE sing 253 n n CA CB PHE sing 254 n n CA HA PHE sing 255 n n C O PHE doub 256 n n C OXT PHE sing 257 n n CB CG PHE sing 258 n n CB HB2 PHE sing 259 n n CB HB3 PHE sing 260 n n CG CD1 PHE doub 261 n y CG CD2 PHE sing 262 n y CD1 CE1 PHE sing 263 n y CD1 HD1 PHE sing 264 n n CD2 CE2 PHE doub 265 n y CD2 HD2 PHE sing 266 n n CE1 CZ PHE doub 267 n y CE1 HE1 PHE sing 268 n n CE2 CZ PHE sing 269 n y CE2 HE2 PHE sing 270 n n CZ HZ PHE sing 271 n n OXT HXT PHE sing 272 n n # _atom_sites.entry_id 5CKV _atom_sites.fract_transf_matrix[1][1] 0.004884 _atom_sites.fract_transf_matrix[1][2] 0.00282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 5 CL CL . D 3 SO4 A 1 502 2 SO4 SO4 . E 3 SO4 A 1 503 3 SO4 SO4 . F 3 SO4 A 1 504 1 SO4 SO4 . G 4 GOL A 1 505 4 GOL GOL . H 4 GOL A 1 506 7 GOL GOL . I 5 TRP A 1 507 1 TRP TRP . J 6 MN A 1 508 2 MN MN . K 7 PHE A 1 509 3 PHE PHE . L 2 CL B 1 501 4 CL CL . M 6 MN B 1 502 1 MN MN . N 3 SO4 B 1 503 1 SO4 SO4 . O 3 SO4 B 1 504 4 SO4 SO4 . P 4 GOL B 1 505 6 GOL GOL . Q 4 GOL B 1 506 11 GOL GOL . R 4 GOL B 1 507 15 GOL GOL . S 8 TYR B 1 508 1 TYR TYR . T 5 TRP B 1 509 2 TRP TRP . U 7 PHE B 1 510 2 PHE PHE . V 9 HOH A 1 601 25 HOH HOH . V 9 HOH A 2 602 54 HOH HOH . V 9 HOH A 3 603 14 HOH HOH . V 9 HOH A 4 604 48 HOH HOH . V 9 HOH A 5 605 49 HOH HOH . V 9 HOH A 6 606 12 HOH HOH . V 9 HOH A 7 607 15 HOH HOH . V 9 HOH A 8 608 6 HOH HOH . V 9 HOH A 9 609 23 HOH HOH . V 9 HOH A 10 610 39 HOH HOH . V 9 HOH A 11 611 4 HOH HOH . V 9 HOH A 12 612 29 HOH HOH . V 9 HOH A 13 613 33 HOH HOH . V 9 HOH A 14 614 51 HOH HOH . V 9 HOH A 15 615 16 HOH HOH . V 9 HOH A 16 616 34 HOH HOH . V 9 HOH A 17 617 18 HOH HOH . V 9 HOH A 18 618 61 HOH HOH . W 9 HOH B 1 601 63 HOH HOH . W 9 HOH B 2 602 11 HOH HOH . W 9 HOH B 3 603 5 HOH HOH . W 9 HOH B 4 604 2 HOH HOH . W 9 HOH B 5 605 30 HOH HOH . W 9 HOH B 6 606 9 HOH HOH . W 9 HOH B 7 607 1 HOH HOH . W 9 HOH B 8 608 26 HOH HOH . W 9 HOH B 9 609 10 HOH HOH . W 9 HOH B 10 610 32 HOH HOH . W 9 HOH B 11 611 56 HOH HOH . W 9 HOH B 12 612 41 HOH HOH . W 9 HOH B 13 613 62 HOH HOH . W 9 HOH B 14 614 3 HOH HOH . W 9 HOH B 15 615 31 HOH HOH . W 9 HOH B 16 616 57 HOH HOH . W 9 HOH B 17 617 40 HOH HOH . W 9 HOH B 18 618 60 HOH HOH . W 9 HOH B 19 619 59 HOH HOH . W 9 HOH B 20 620 24 HOH HOH . W 9 HOH B 21 621 19 HOH HOH . W 9 HOH B 22 622 58 HOH HOH . W 9 HOH B 23 623 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . K 7 93.557 -39.106 -18.835 0.91 42.3 ? N PHE 509 A 1 HETATM 2 C CA PHE . . . K 7 94.085 -40.433 -19.136 0.91 49.58 ? CA PHE 509 A 1 HETATM 3 C C PHE . . . K 7 94.291 -41.271 -17.876 0.91 52.53 ? C PHE 509 A 1 HETATM 4 O O PHE . . . K 7 94.393 -42.494 -17.956 0.91 55.63 ? O PHE 509 A 1 HETATM 5 C CB PHE . . . K 7 95.403 -40.315 -19.882 0.91 45.4 ? CB PHE 509 A 1 HETATM 6 C CG PHE . . . K 7 96.499 -39.687 -19.069 0.91 53.5 ? CG PHE 509 A 1 HETATM 7 C CD1 PHE . . . K 7 96.494 -38.328 -18.795 0.91 42.4 ? CD1 PHE 509 A 1 HETATM 8 C CD2 PHE . . . K 7 97.535 -40.459 -18.581 0.91 51.59 ? CD2 PHE 509 A 1 HETATM 9 C CE1 PHE . . . K 7 97.499 -37.76 -18.054 0.91 37.41 ? CE1 PHE 509 A 1 HETATM 10 C CE2 PHE . . . K 7 98.546 -39.893 -17.842 0.91 37.92 ? CE2 PHE 509 A 1 HETATM 11 C CZ PHE . . . K 7 98.527 -38.542 -17.577 0.91 51.47 ? CZ PHE 509 A 1 HETATM 12 O OXT PHE . . . K 7 94.364 -40.756 -16.759 0.91 42.72 ? OXT PHE 509 A 1 HETATM 13 H HA PHE . . . K 7 93.457 -40.901 -19.708 0.91 59.49 ? HA PHE 509 A 1 HETATM 14 H HB2 PHE . . . K 7 95.696 -41.202 -20.142 0.91 54.48 ? HB2 PHE 509 A 1 HETATM 15 H HB3 PHE . . . K 7 95.268 -39.768 -20.671 0.91 54.48 ? HB3 PHE 509 A 1 HETATM 16 H HD1 PHE . . . K 7 95.803 -37.796 -19.116 0.91 50.89 ? HD1 PHE 509 A 1 HETATM 17 H HD2 PHE . . . K 7 97.552 -41.372 -18.76 0.91 61.91 ? HD2 PHE 509 A 1 HETATM 18 H HE1 PHE . . . K 7 97.487 -36.848 -17.876 0.91 44.89 ? HE1 PHE 509 A 1 HETATM 19 H HE2 PHE . . . K 7 99.239 -40.422 -17.518 0.91 45.5 ? HE2 PHE 509 A 1 HETATM 20 H HZ PHE . . . K 7 99.209 -38.158 -17.074 0.91 61.77 ? HZ PHE 509 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #