data_5CKX
#
_model_server_result.job_id            gYFJ1C6leQjUdEyumKZvtg 
_model_server_result.datetime_utc      '2024-11-28 07:37:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ckx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":101}' 
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_entry.id    5CKX 
#
_exptl.entry_id    5CKX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CKX 
_cell.length_a            203.397 
_cell.length_b            203.397 
_cell.length_c            67.049 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CKX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 S N N 
? 6 T N N 
? 6 W N N 
? 6 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 97 A CYS 87 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc2 A NE2 HIS 379 A HIS 369 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc3 A OE1 GLU 421 A GLU 411 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc4 A OD2 ASP 451 A ASP 441 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 B SG CYS 97 B CYS 87 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc6 B NE2 HIS 379 B HIS 369 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc7 B OE1 GLU 421 B GLU 411 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc8 B OE2 GLU 421 B GLU 411 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 303 n n 
S O2 SO4 doub 304 n n 
S O3 SO4 sing 305 n n 
S O4 SO4 sing 306 n n 
#
_atom_sites.entry_id                     5CKX 
_atom_sites.fract_transf_matrix[1][1]    0.004916 
_atom_sites.fract_transf_matrix[1][2]    0.002839 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 501 1 MN MN . 
F 4 GOL A 1 502 803 GOL GOL . 
G 5 CL A 1 503 1 CL CL . 
H 5 CL A 1 504 1 CL CL . 
I 6 SO4 A 1 505 1 SO4 SO4 . 
J 6 SO4 A 1 506 3 SO4 SO4 . 
K 6 SO4 A 1 507 5 SO4 SO4 . 
L 6 SO4 A 1 508 8 SO4 SO4 . 
M 7 PHE A 1 509 601 PHE PHE . 
N 3 MN B 1 501 2 MN MN . 
O 4 GOL B 1 502 802 GOL GOL . 
P 4 GOL B 1 503 2 GOL GOL . 
Q 4 GOL B 1 504 3 GOL GOL . 
R 5 CL B 1 505 1 CL CL . 
S 6 SO4 B 1 506 2 SO4 SO4 . 
T 6 SO4 B 1 507 7 SO4 SO4 . 
U 7 PHE B 1 508 602 PHE PHE . 
V 8 TYR B 1 509 701 TYR TYR . 
W 6 SO4 C 1 101 4 SO4 SO4 . 
X 9 TSA C 1 102 2 TSA TSA . 
Y 4 GOL D 1 101 804 GOL GOL . 
Z 6 SO4 D 1 102 6 SO4 SO4 . 
AA 9 TSA D 1 103 1 TSA TSA . 
BA 10 HOH A 1 601 73 HOH HOH . 
BA 10 HOH A 2 602 67 HOH HOH . 
BA 10 HOH A 3 603 1 HOH HOH . 
BA 10 HOH A 4 604 68 HOH HOH . 
BA 10 HOH A 5 605 77 HOH HOH . 
BA 10 HOH A 6 606 30 HOH HOH . 
BA 10 HOH A 7 607 62 HOH HOH . 
BA 10 HOH A 8 608 9 HOH HOH . 
BA 10 HOH A 9 609 6 HOH HOH . 
BA 10 HOH A 10 610 39 HOH HOH . 
BA 10 HOH A 11 611 7 HOH HOH . 
BA 10 HOH A 12 612 90 HOH HOH . 
BA 10 HOH A 13 613 71 HOH HOH . 
BA 10 HOH A 14 614 91 HOH HOH . 
BA 10 HOH A 15 615 60 HOH HOH . 
BA 10 HOH A 16 616 82 HOH HOH . 
BA 10 HOH A 17 617 75 HOH HOH . 
CA 10 HOH B 1 601 26 HOH HOH . 
CA 10 HOH B 2 602 8 HOH HOH . 
CA 10 HOH B 3 603 2 HOH HOH . 
CA 10 HOH B 4 604 46 HOH HOH . 
CA 10 HOH B 5 605 12 HOH HOH . 
CA 10 HOH B 6 606 5 HOH HOH . 
CA 10 HOH B 7 607 13 HOH HOH . 
CA 10 HOH B 8 608 4 HOH HOH . 
CA 10 HOH B 9 609 37 HOH HOH . 
CA 10 HOH B 10 610 3 HOH HOH . 
CA 10 HOH B 11 611 38 HOH HOH . 
CA 10 HOH B 12 612 74 HOH HOH . 
CA 10 HOH B 13 613 76 HOH HOH . 
CA 10 HOH B 14 614 88 HOH HOH . 
CA 10 HOH B 15 615 24 HOH HOH . 
CA 10 HOH B 16 616 16 HOH HOH . 
CA 10 HOH B 17 617 11 HOH HOH . 
CA 10 HOH B 18 618 32 HOH HOH . 
CA 10 HOH B 19 619 18 HOH HOH . 
CA 10 HOH B 20 620 29 HOH HOH . 
CA 10 HOH B 21 621 64 HOH HOH . 
CA 10 HOH B 22 622 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . W 6 56.042 140.46 8.687 0.81 105.01 ? S SO4 101 C 1 
HETATM 2 O O1 SO4 . . . W 6 57.009 139.916 7.736 0.81 101.12 ? O1 SO4 101 C 1 
HETATM 3 O O2 SO4 . . . W 6 54.7 140.016 8.323 0.81 103.87 ? O2 SO4 101 C 1 
HETATM 4 O O3 SO4 . . . W 6 56.094 141.918 8.643 0.81 119.96 ? O3 SO4 101 C 1 
HETATM 5 O O4 SO4 . . . W 6 56.363 140.001 10.038 0.81 78.83 ? O4 SO4 101 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#