data_5CKX
#
_model_server_result.job_id            ItPllLGmuclFKwHGwMO7mw 
_model_server_result.datetime_utc      '2024-10-18 12:33:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ckx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":102}' 
#
_entry.id    5CKX 
#
_exptl.entry_id    5CKX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.199 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CKX 
_cell.length_a            203.397 
_cell.length_b            203.397 
_cell.length_c            67.049 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CKX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 X N N 
? 9 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 97 A CYS 87 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc2 A NE2 HIS 379 A HIS 369 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc3 A OE1 GLU 421 A GLU 411 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc4 A OD2 ASP 451 A ASP 441 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 B SG CYS 97 B CYS 87 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc6 B NE2 HIS 379 B HIS 369 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc7 B OE1 GLU 421 B GLU 411 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc8 B OE2 GLU 421 B GLU 411 1_555 N MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
#
_chem_comp.formula           'C10 H12 O6' 
_chem_comp.formula_weight    228.199 
_chem_comp.id                TSA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TSA sing 351 n n 
C1 C6 TSA sing 352 n n 
C1 C9 TSA sing 353 n n 
C1 C10 TSA sing 354 n n 
C2 C3 TSA doub 355 n n 
C2 H2 TSA sing 356 n n 
C3 C4 TSA sing 357 n n 
C3 H3 TSA sing 358 n n 
C4 O5 TSA sing 359 n n 
C4 C5 TSA sing 360 n n 
C4 H4 TSA sing 361 n n 
O5 HO5 TSA sing 362 n n 
C5 C6 TSA sing 363 n n 
C5 O7 TSA sing 364 n n 
C5 H5 TSA sing 365 n n 
C6 H61 TSA sing 366 n n 
C6 H62 TSA sing 367 n n 
O7 C8 TSA sing 368 n n 
C8 C9 TSA sing 369 n n 
C8 C11 TSA sing 370 n n 
C8 H8 TSA sing 371 n n 
C9 H91 TSA sing 372 n n 
C9 H92 TSA sing 373 n n 
C10 O1 TSA doub 374 n n 
C10 O2 TSA sing 375 n n 
O2 HO2 TSA sing 376 n n 
C11 O3 TSA doub 377 n n 
C11 O4 TSA sing 378 n n 
O4 HO4 TSA sing 379 n n 
#
_atom_sites.entry_id                     5CKX 
_atom_sites.fract_transf_matrix[1][1]    0.004916 
_atom_sites.fract_transf_matrix[1][2]    0.002839 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 501 1 MN MN . 
F 4 GOL A 1 502 803 GOL GOL . 
G 5 CL A 1 503 1 CL CL . 
H 5 CL A 1 504 1 CL CL . 
I 6 SO4 A 1 505 1 SO4 SO4 . 
J 6 SO4 A 1 506 3 SO4 SO4 . 
K 6 SO4 A 1 507 5 SO4 SO4 . 
L 6 SO4 A 1 508 8 SO4 SO4 . 
M 7 PHE A 1 509 601 PHE PHE . 
N 3 MN B 1 501 2 MN MN . 
O 4 GOL B 1 502 802 GOL GOL . 
P 4 GOL B 1 503 2 GOL GOL . 
Q 4 GOL B 1 504 3 GOL GOL . 
R 5 CL B 1 505 1 CL CL . 
S 6 SO4 B 1 506 2 SO4 SO4 . 
T 6 SO4 B 1 507 7 SO4 SO4 . 
U 7 PHE B 1 508 602 PHE PHE . 
V 8 TYR B 1 509 701 TYR TYR . 
W 6 SO4 C 1 101 4 SO4 SO4 . 
X 9 TSA C 1 102 2 TSA TSA . 
Y 4 GOL D 1 101 804 GOL GOL . 
Z 6 SO4 D 1 102 6 SO4 SO4 . 
AA 9 TSA D 1 103 1 TSA TSA . 
BA 10 HOH A 1 601 73 HOH HOH . 
BA 10 HOH A 2 602 67 HOH HOH . 
BA 10 HOH A 3 603 1 HOH HOH . 
BA 10 HOH A 4 604 68 HOH HOH . 
BA 10 HOH A 5 605 77 HOH HOH . 
BA 10 HOH A 6 606 30 HOH HOH . 
BA 10 HOH A 7 607 62 HOH HOH . 
BA 10 HOH A 8 608 9 HOH HOH . 
BA 10 HOH A 9 609 6 HOH HOH . 
BA 10 HOH A 10 610 39 HOH HOH . 
BA 10 HOH A 11 611 7 HOH HOH . 
BA 10 HOH A 12 612 90 HOH HOH . 
BA 10 HOH A 13 613 71 HOH HOH . 
BA 10 HOH A 14 614 91 HOH HOH . 
BA 10 HOH A 15 615 60 HOH HOH . 
BA 10 HOH A 16 616 82 HOH HOH . 
BA 10 HOH A 17 617 75 HOH HOH . 
CA 10 HOH B 1 601 26 HOH HOH . 
CA 10 HOH B 2 602 8 HOH HOH . 
CA 10 HOH B 3 603 2 HOH HOH . 
CA 10 HOH B 4 604 46 HOH HOH . 
CA 10 HOH B 5 605 12 HOH HOH . 
CA 10 HOH B 6 606 5 HOH HOH . 
CA 10 HOH B 7 607 13 HOH HOH . 
CA 10 HOH B 8 608 4 HOH HOH . 
CA 10 HOH B 9 609 37 HOH HOH . 
CA 10 HOH B 10 610 3 HOH HOH . 
CA 10 HOH B 11 611 38 HOH HOH . 
CA 10 HOH B 12 612 74 HOH HOH . 
CA 10 HOH B 13 613 76 HOH HOH . 
CA 10 HOH B 14 614 88 HOH HOH . 
CA 10 HOH B 15 615 24 HOH HOH . 
CA 10 HOH B 16 616 16 HOH HOH . 
CA 10 HOH B 17 617 11 HOH HOH . 
CA 10 HOH B 18 618 32 HOH HOH . 
CA 10 HOH B 19 619 18 HOH HOH . 
CA 10 HOH B 20 620 29 HOH HOH . 
CA 10 HOH B 21 621 64 HOH HOH . 
CA 10 HOH B 22 622 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TSA . . . X 9 64.345 134.965 8.628 1 100.17 ? C1 TSA 102 C 1 
HETATM 2 C C2 TSA . . . X 9 63.17 135.166 7.701 1 90.31 ? C2 TSA 102 C 1 
HETATM 3 C C3 TSA . . . X 9 61.917 134.967 8.114 1 83.03 ? C3 TSA 102 C 1 
HETATM 4 C C4 TSA . . . X 9 61.569 134.533 9.527 1 92.08 ? C4 TSA 102 C 1 
HETATM 5 O O5 TSA . . . X 9 60.733 133.381 9.436 1 84.11 ? O5 TSA 102 C 1 
HETATM 6 C C5 TSA . . . X 9 62.795 134.226 10.398 1 92.65 ? C5 TSA 102 C 1 
HETATM 7 C C6 TSA . . . X 9 64.007 133.828 9.573 1 95.69 ? C6 TSA 102 C 1 
HETATM 8 O O7 TSA . . . X 9 63.151 135.353 11.205 1 90.53 ? O7 TSA 102 C 1 
HETATM 9 C C8 TSA . . . X 9 63.636 136.535 10.536 1 98.64 ? C8 TSA 102 C 1 
HETATM 10 C C9 TSA . . . X 9 64.636 136.234 9.415 1 98.13 ? C9 TSA 102 C 1 
HETATM 11 C C10 TSA . . . X 9 65.58 134.617 7.835 1 96.32 ? C10 TSA 102 C 1 
HETATM 12 O O1 TSA . . . X 9 65.747 135.159 6.719 1 92.53 ? O1 TSA 102 C 1 
HETATM 13 O O2 TSA . . . X 9 66.409 133.817 8.328 1 93.38 ? O2 TSA 102 C 1 
HETATM 14 C C11 TSA . . . X 9 62.508 137.395 10.018 1 98.08 ? C11 TSA 102 C 1 
HETATM 15 O O3 TSA . . . X 9 62.627 137.915 8.891 1 89.08 ? O3 TSA 102 C 1 
HETATM 16 O O4 TSA . . . X 9 61.493 137.57 10.731 1 102.66 ? O4 TSA 102 C 1 
HETATM 17 H H2 TSA . . . X 9 63.347 135.474 6.684 1 108.37 ? H2 TSA 102 C 1 
HETATM 18 H H3 TSA . . . X 9 61.114 135.124 7.413 1 99.64 ? H3 TSA 102 C 1 
HETATM 19 H H4 TSA . . . X 9 61.008 135.346 10.01 1 110.49 ? H4 TSA 102 C 1 
HETATM 20 H HO5 TSA . . . X 9 59.955 133.589 8.9 1 100.94 ? HO5 TSA 102 C 1 
HETATM 21 H H5 TSA . . . X 9 62.54 133.382 11.054 1 111.17 ? H5 TSA 102 C 1 
HETATM 22 H H61 TSA . . . X 9 64.855 133.625 10.23 1 114.82 ? H61 TSA 102 C 1 
HETATM 23 H H62 TSA . . . X 9 63.789 132.922 9.003 1 114.82 ? H62 TSA 102 C 1 
HETATM 24 H H8 TSA . . . X 9 64.177 137.135 11.281 1 118.37 ? H8 TSA 102 C 1 
HETATM 25 H H91 TSA . . . X 9 65.635 136.155 9.849 1 117.76 ? H91 TSA 102 C 1 
HETATM 26 H H92 TSA . . . X 9 64.651 137.079 8.723 1 117.76 ? H92 TSA 102 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#