data_5CL2 # _model_server_result.job_id ce1YkCd8ca4uXXInip_07A _model_server_result.datetime_utc '2024-12-05 13:08:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5CL2 # _exptl.entry_id 5CL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CL2 _cell.length_a 65.995 _cell.length_b 74.228 _cell.length_c 133.075 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 14 A THR 20 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 A OD2 ASP 122 A ASP 128 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OD1 ASP 124 A ASP 130 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc4 A OD2 ASP 124 A ASP 130 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 C NA NA . A NA 301 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc6 B O THR 14 B THR 20 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 B OD2 ASP 122 B ASP 128 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc8 B OD1 ASP 124 B ASP 130 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc9 B OD2 ASP 124 B ASP 130 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CL2 _atom_sites.fract_transf_matrix[1][1] 0.015153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 1 NA NA . D 2 NA B 1 301 2 NA NA . E 3 HOH A 1 401 3 HOH HOH . E 3 HOH A 2 402 28 HOH HOH . E 3 HOH A 3 403 1 HOH HOH . E 3 HOH A 4 404 35 HOH HOH . E 3 HOH A 5 405 25 HOH HOH . E 3 HOH A 6 406 31 HOH HOH . E 3 HOH A 7 407 21 HOH HOH . E 3 HOH A 8 408 9 HOH HOH . E 3 HOH A 9 409 5 HOH HOH . E 3 HOH A 10 410 34 HOH HOH . E 3 HOH A 11 411 22 HOH HOH . E 3 HOH A 12 412 15 HOH HOH . E 3 HOH A 13 413 4 HOH HOH . E 3 HOH A 14 414 27 HOH HOH . E 3 HOH A 15 415 10 HOH HOH . E 3 HOH A 16 416 16 HOH HOH . E 3 HOH A 17 417 40 HOH HOH . E 3 HOH A 18 418 13 HOH HOH . E 3 HOH A 19 419 26 HOH HOH . E 3 HOH A 20 420 6 HOH HOH . E 3 HOH A 21 421 33 HOH HOH . E 3 HOH A 22 422 20 HOH HOH . E 3 HOH A 23 423 29 HOH HOH . E 3 HOH A 24 424 36 HOH HOH . E 3 HOH A 25 425 38 HOH HOH . E 3 HOH A 26 426 43 HOH HOH . F 3 HOH B 1 401 41 HOH HOH . F 3 HOH B 2 402 8 HOH HOH . F 3 HOH B 3 403 2 HOH HOH . F 3 HOH B 4 404 17 HOH HOH . F 3 HOH B 5 405 7 HOH HOH . F 3 HOH B 6 406 32 HOH HOH . F 3 HOH B 7 407 19 HOH HOH . F 3 HOH B 8 408 11 HOH HOH . F 3 HOH B 9 409 12 HOH HOH . F 3 HOH B 10 410 39 HOH HOH . F 3 HOH B 11 411 30 HOH HOH . F 3 HOH B 12 412 18 HOH HOH . F 3 HOH B 13 413 37 HOH HOH . F 3 HOH B 14 414 14 HOH HOH . F 3 HOH B 15 415 23 HOH HOH . F 3 HOH B 16 416 24 HOH HOH . F 3 HOH B 17 417 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.548 _atom_site.Cartn_y -1.624 _atom_site.Cartn_z -16.31 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #