data_5CLL # _model_server_result.job_id jiveS_slo84lHRJckTpqoA _model_server_result.datetime_utc '2025-03-04 07:44:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 5CLL # _exptl.entry_id 5CLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.05 _cell.angle_gamma 90 _cell.entry_id 5CLL _cell.length_a 50.6 _cell.length_b 55.78 _cell.length_c 122.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 E O2B GDP . A GDP 200 1_555 F BE BEF . A BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc4 E O3B GDP . A GDP 200 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 G MG MG . A MG 202 1_555 K O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 G MG MG . A MG 202 1_555 K O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 C OG1 THR 24 C THR 24 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc8 C OG1 THR 42 C THR 42 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 H O1B GDP . C GDP 200 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc10 J MG MG . C MG 202 1_555 M O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc11 J MG MG . C MG 202 1_555 M O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 5CLL _atom_sites.fract_transf_matrix[1][1] 0.019763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP A 1 200 200 GDP GDP . F 4 BEF A 1 201 201 BEF BEF . G 5 MG A 1 202 202 MG MG . H 3 GDP C 1 200 200 GDP GDP . I 4 BEF C 1 201 201 BEF BEF . J 5 MG C 1 202 202 MG MG . K 6 HOH A 1 301 12 HOH HOH . K 6 HOH A 2 302 3 HOH HOH . K 6 HOH A 3 303 29 HOH HOH . K 6 HOH A 4 304 16 HOH HOH . K 6 HOH A 5 305 13 HOH HOH . K 6 HOH A 6 306 1 HOH HOH . K 6 HOH A 7 307 6 HOH HOH . K 6 HOH A 8 308 19 HOH HOH . K 6 HOH A 9 309 8 HOH HOH . K 6 HOH A 10 310 15 HOH HOH . L 6 HOH B 1 201 33 HOH HOH . L 6 HOH B 2 202 30 HOH HOH . L 6 HOH B 3 203 10 HOH HOH . L 6 HOH B 4 204 35 HOH HOH . L 6 HOH B 5 205 26 HOH HOH . L 6 HOH B 6 206 34 HOH HOH . M 6 HOH C 1 301 27 HOH HOH . M 6 HOH C 2 302 4 HOH HOH . M 6 HOH C 3 303 22 HOH HOH . M 6 HOH C 4 304 24 HOH HOH . M 6 HOH C 5 305 5 HOH HOH . M 6 HOH C 6 306 31 HOH HOH . M 6 HOH C 7 307 11 HOH HOH . M 6 HOH C 8 308 20 HOH HOH . M 6 HOH C 9 309 21 HOH HOH . M 6 HOH C 10 310 18 HOH HOH . M 6 HOH C 11 311 17 HOH HOH . M 6 HOH C 12 312 25 HOH HOH . N 6 HOH D 1 201 28 HOH HOH . N 6 HOH D 2 202 7 HOH HOH . N 6 HOH D 3 203 23 HOH HOH . N 6 HOH D 4 204 2 HOH HOH . N 6 HOH D 5 205 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . I 4 -2.093 -15.514 50.856 1 25.48 ? BE BEF 201 C 1 HETATM 2 F F1 BEF . . . I 4 -2.64 -14.617 52.258 1 26.07 ? F1 BEF 201 C 1 HETATM 3 F F2 BEF . . . I 4 -3.123 -16.007 49.558 1 25.53 ? F2 BEF 201 C 1 HETATM 4 F F3 BEF . . . I 4 -0.764 -16.602 50.913 1 25.5 ? F3 BEF 201 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #