data_5CLM # _model_server_result.job_id MiQv-A-P4oOJhnQSnQiu2g _model_server_result.datetime_utc '2024-11-22 07:28:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5clm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5CLM # _exptl.entry_id 5CLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.795 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(3R)-5-amino-3-methyl-3,6-dihydro-2H-1,4-oxazin-3-yl]phenyl}-5-chloropyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CLM _cell.length_a 100.824 _cell.length_b 100.824 _cell.length_c 170.104 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 155 1_555 A SG CYS 375 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 233 A CYS 217 1_555 A SG CYS 398 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 285 A CYS 269 1_555 A SG CYS 335 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C17 H17 Cl N4 O2' _chem_comp.formula_weight 344.795 _chem_comp.id 52K _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(3R)-5-amino-3-methyl-3,6-dihydro-2H-1,4-oxazin-3-yl]phenyl}-5-chloropyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C23 52K sing 1 n n C23 C21 52K doub 2 n y C23 C22 52K sing 3 n y C21 N19 52K sing 4 n y C22 C20 52K doub 5 n y N19 C18 52K doub 6 n y C20 C18 52K sing 7 n y C18 C16 52K sing 8 n n C16 N15 52K sing 9 n n C16 O17 52K doub 10 n n N15 C12 52K sing 11 n n N7 C6 52K sing 12 n n C12 C10 52K doub 13 n y C12 C14 52K sing 14 n y C10 C9 52K sing 15 n y C6 N4 52K doub 16 n n C6 C5 52K sing 17 n n N4 C2 52K sing 18 n n C14 C13 52K doub 19 n y C5 O3 52K sing 20 n n C9 C2 52K sing 21 n n C9 C11 52K doub 22 n y C2 C8 52K sing 23 n n C2 C1 52K sing 24 n n C13 C11 52K sing 25 n y O3 C1 52K sing 26 n n C1 H1 52K sing 27 n n C1 H2 52K sing 28 n n C5 H3 52K sing 29 n n C5 H4 52K sing 30 n n C8 H5 52K sing 31 n n C8 H6 52K sing 32 n n C8 H7 52K sing 33 n n C11 H8 52K sing 34 n n C21 H9 52K sing 35 n n C22 H10 52K sing 36 n n C20 H11 52K sing 37 n n N15 H12 52K sing 38 n n C10 H13 52K sing 39 n n C14 H14 52K sing 40 n n C13 H15 52K sing 41 n n N7 H16 52K sing 42 n n N7 H17 52K sing 43 n n # _atom_sites.entry_id 5CLM _atom_sites.fract_transf_matrix[1][1] 0.009918 _atom_sites.fract_transf_matrix[1][2] 0.005726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 52K A 1 401 1 52K INX . C 3 IOD A 1 402 1 IOD IOD . D 3 IOD A 1 403 2 IOD IOD . E 3 IOD A 1 404 3 IOD IOD . F 4 CL A 1 405 4 CL CL . G 5 HOH A 1 501 22 HOH HOH . G 5 HOH A 2 502 95 HOH HOH . G 5 HOH A 3 503 10 HOH HOH . G 5 HOH A 4 504 12 HOH HOH . G 5 HOH A 5 505 48 HOH HOH . G 5 HOH A 6 506 78 HOH HOH . G 5 HOH A 7 507 80 HOH HOH . G 5 HOH A 8 508 55 HOH HOH . G 5 HOH A 9 509 1 HOH HOH . G 5 HOH A 10 510 8 HOH HOH . G 5 HOH A 11 511 107 HOH HOH . G 5 HOH A 12 512 84 HOH HOH . G 5 HOH A 13 513 19 HOH HOH . G 5 HOH A 14 514 5 HOH HOH . G 5 HOH A 15 515 6 HOH HOH . G 5 HOH A 16 516 2 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 59 HOH HOH . G 5 HOH A 19 519 13 HOH HOH . G 5 HOH A 20 520 62 HOH HOH . G 5 HOH A 21 521 11 HOH HOH . G 5 HOH A 22 522 57 HOH HOH . G 5 HOH A 23 523 21 HOH HOH . G 5 HOH A 24 524 49 HOH HOH . G 5 HOH A 25 525 18 HOH HOH . G 5 HOH A 26 526 20 HOH HOH . G 5 HOH A 27 527 75 HOH HOH . G 5 HOH A 28 528 54 HOH HOH . G 5 HOH A 29 529 14 HOH HOH . G 5 HOH A 30 530 24 HOH HOH . G 5 HOH A 31 531 65 HOH HOH . G 5 HOH A 32 532 97 HOH HOH . G 5 HOH A 33 533 70 HOH HOH . G 5 HOH A 34 534 9 HOH HOH . G 5 HOH A 35 535 101 HOH HOH . G 5 HOH A 36 536 74 HOH HOH . G 5 HOH A 37 537 34 HOH HOH . G 5 HOH A 38 538 103 HOH HOH . G 5 HOH A 39 539 50 HOH HOH . G 5 HOH A 40 540 17 HOH HOH . G 5 HOH A 41 541 53 HOH HOH . G 5 HOH A 42 542 81 HOH HOH . G 5 HOH A 43 543 7 HOH HOH . G 5 HOH A 44 544 79 HOH HOH . G 5 HOH A 45 545 15 HOH HOH . G 5 HOH A 46 546 71 HOH HOH . G 5 HOH A 47 547 94 HOH HOH . G 5 HOH A 48 548 58 HOH HOH . G 5 HOH A 49 549 31 HOH HOH . G 5 HOH A 50 550 3 HOH HOH . G 5 HOH A 51 551 67 HOH HOH . G 5 HOH A 52 552 92 HOH HOH . G 5 HOH A 53 553 42 HOH HOH . G 5 HOH A 54 554 63 HOH HOH . G 5 HOH A 55 555 88 HOH HOH . G 5 HOH A 56 556 56 HOH HOH . G 5 HOH A 57 557 29 HOH HOH . G 5 HOH A 58 558 40 HOH HOH . G 5 HOH A 59 559 83 HOH HOH . G 5 HOH A 60 560 64 HOH HOH . G 5 HOH A 61 561 33 HOH HOH . G 5 HOH A 62 562 72 HOH HOH . G 5 HOH A 63 563 104 HOH HOH . G 5 HOH A 64 564 36 HOH HOH . G 5 HOH A 65 565 23 HOH HOH . G 5 HOH A 66 566 96 HOH HOH . G 5 HOH A 67 567 52 HOH HOH . G 5 HOH A 68 568 25 HOH HOH . G 5 HOH A 69 569 60 HOH HOH . G 5 HOH A 70 570 47 HOH HOH . G 5 HOH A 71 571 66 HOH HOH . G 5 HOH A 72 572 91 HOH HOH . G 5 HOH A 73 573 105 HOH HOH . G 5 HOH A 74 574 26 HOH HOH . G 5 HOH A 75 575 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 52K . . . B 2 69.025 49.362 9.258 1 34.77 ? C1 52K 401 A 1 HETATM 2 C C2 52K . . . B 2 69.434 50.34 8.143 1 35.47 ? C2 52K 401 A 1 HETATM 3 C C5 52K . . . B 2 68.338 47.69 7.68 1 36.26 ? C5 52K 401 A 1 HETATM 4 C C6 52K . . . B 2 68.049 48.876 6.765 1 40.34 ? C6 52K 401 A 1 HETATM 5 C C8 52K . . . B 2 69.114 51.775 8.572 1 29.43 ? C8 52K 401 A 1 HETATM 6 C C11 52K . . . B 2 71.916 50.677 8.647 1 36.79 ? C11 52K 401 A 1 HETATM 7 C C12 52K . . . B 2 72.708 49.258 6.386 1 34.92 ? C12 52K 401 A 1 HETATM 8 C C16 52K . . . B 2 74.065 47.848 4.681 1 42.09 ? C16 52K 401 A 1 HETATM 9 C C18 52K . . . B 2 73.947 47.082 3.424 1 40.91 ? C18 52K 401 A 1 HETATM 10 C C21 52K . . . B 2 72.733 46.682 1.38 1 38.07 ? C21 52K 401 A 1 HETATM 11 C C23 52K . . . B 2 73.597 45.656 1.046 1 37.23 ? C23 52K 401 A 1 HETATM 12 CL CL 52K . . . B 2 73.354 44.817 -0.434 1 46.09 ? CL 52K 401 A 1 HETATM 13 N N19 52K . . . B 2 72.904 47.389 2.561 1 39.14 ? N19 52K 401 A 1 HETATM 14 C C22 52K . . . B 2 74.643 45.337 1.904 1 34.64 ? C22 52K 401 A 1 HETATM 15 C C20 52K . . . B 2 74.816 46.038 3.094 1 39.67 ? C20 52K 401 A 1 HETATM 16 O O17 52K . . . B 2 75.137 47.906 5.246 1 40.47 ? O17 52K 401 A 1 HETATM 17 N N15 52K . . . B 2 72.951 48.494 5.217 1 32.07 ? N15 52K 401 A 1 HETATM 18 C C10 52K . . . B 2 71.365 49.421 6.686 1 35.78 ? C10 52K 401 A 1 HETATM 19 C C14 52K . . . B 2 73.669 49.798 7.235 1 33.91 ? C14 52K 401 A 1 HETATM 20 C C13 52K . . . B 2 73.267 50.505 8.36 1 30.75 ? C13 52K 401 A 1 HETATM 21 C C9 52K . . . B 2 70.933 50.141 7.806 1 35.54 ? C9 52K 401 A 1 HETATM 22 N N4 52K . . . B 2 68.607 50.036 6.952 1 39.73 ? N4 52K 401 A 1 HETATM 23 N N7 52K . . . B 2 67.18 48.737 5.721 1 41.67 ? N7 52K 401 A 1 HETATM 24 O O3 52K . . . B 2 69.164 48.017 8.805 1 37.54 ? O3 52K 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #