data_5CLM # _model_server_result.job_id uKWYSLZ9zxwHdKwIHdfl3g _model_server_result.datetime_utc '2024-11-22 07:54:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5clm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5CLM # _exptl.entry_id 5CLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CLM _cell.length_a 100.824 _cell.length_b 100.824 _cell.length_c 170.104 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 155 1_555 A SG CYS 375 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 233 A CYS 217 1_555 A SG CYS 398 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 285 A CYS 269 1_555 A SG CYS 335 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CLM _atom_sites.fract_transf_matrix[1][1] 0.009918 _atom_sites.fract_transf_matrix[1][2] 0.005726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 52K A 1 401 1 52K INX . C 3 IOD A 1 402 1 IOD IOD . D 3 IOD A 1 403 2 IOD IOD . E 3 IOD A 1 404 3 IOD IOD . F 4 CL A 1 405 4 CL CL . G 5 HOH A 1 501 22 HOH HOH . G 5 HOH A 2 502 95 HOH HOH . G 5 HOH A 3 503 10 HOH HOH . G 5 HOH A 4 504 12 HOH HOH . G 5 HOH A 5 505 48 HOH HOH . G 5 HOH A 6 506 78 HOH HOH . G 5 HOH A 7 507 80 HOH HOH . G 5 HOH A 8 508 55 HOH HOH . G 5 HOH A 9 509 1 HOH HOH . G 5 HOH A 10 510 8 HOH HOH . G 5 HOH A 11 511 107 HOH HOH . G 5 HOH A 12 512 84 HOH HOH . G 5 HOH A 13 513 19 HOH HOH . G 5 HOH A 14 514 5 HOH HOH . G 5 HOH A 15 515 6 HOH HOH . G 5 HOH A 16 516 2 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 59 HOH HOH . G 5 HOH A 19 519 13 HOH HOH . G 5 HOH A 20 520 62 HOH HOH . G 5 HOH A 21 521 11 HOH HOH . G 5 HOH A 22 522 57 HOH HOH . G 5 HOH A 23 523 21 HOH HOH . G 5 HOH A 24 524 49 HOH HOH . G 5 HOH A 25 525 18 HOH HOH . G 5 HOH A 26 526 20 HOH HOH . G 5 HOH A 27 527 75 HOH HOH . G 5 HOH A 28 528 54 HOH HOH . G 5 HOH A 29 529 14 HOH HOH . G 5 HOH A 30 530 24 HOH HOH . G 5 HOH A 31 531 65 HOH HOH . G 5 HOH A 32 532 97 HOH HOH . G 5 HOH A 33 533 70 HOH HOH . G 5 HOH A 34 534 9 HOH HOH . G 5 HOH A 35 535 101 HOH HOH . G 5 HOH A 36 536 74 HOH HOH . G 5 HOH A 37 537 34 HOH HOH . G 5 HOH A 38 538 103 HOH HOH . G 5 HOH A 39 539 50 HOH HOH . G 5 HOH A 40 540 17 HOH HOH . G 5 HOH A 41 541 53 HOH HOH . G 5 HOH A 42 542 81 HOH HOH . G 5 HOH A 43 543 7 HOH HOH . G 5 HOH A 44 544 79 HOH HOH . G 5 HOH A 45 545 15 HOH HOH . G 5 HOH A 46 546 71 HOH HOH . G 5 HOH A 47 547 94 HOH HOH . G 5 HOH A 48 548 58 HOH HOH . G 5 HOH A 49 549 31 HOH HOH . G 5 HOH A 50 550 3 HOH HOH . G 5 HOH A 51 551 67 HOH HOH . G 5 HOH A 52 552 92 HOH HOH . G 5 HOH A 53 553 42 HOH HOH . G 5 HOH A 54 554 63 HOH HOH . G 5 HOH A 55 555 88 HOH HOH . G 5 HOH A 56 556 56 HOH HOH . G 5 HOH A 57 557 29 HOH HOH . G 5 HOH A 58 558 40 HOH HOH . G 5 HOH A 59 559 83 HOH HOH . G 5 HOH A 60 560 64 HOH HOH . G 5 HOH A 61 561 33 HOH HOH . G 5 HOH A 62 562 72 HOH HOH . G 5 HOH A 63 563 104 HOH HOH . G 5 HOH A 64 564 36 HOH HOH . G 5 HOH A 65 565 23 HOH HOH . G 5 HOH A 66 566 96 HOH HOH . G 5 HOH A 67 567 52 HOH HOH . G 5 HOH A 68 568 25 HOH HOH . G 5 HOH A 69 569 60 HOH HOH . G 5 HOH A 70 570 47 HOH HOH . G 5 HOH A 71 571 66 HOH HOH . G 5 HOH A 72 572 91 HOH HOH . G 5 HOH A 73 573 105 HOH HOH . G 5 HOH A 74 574 26 HOH HOH . G 5 HOH A 75 575 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 55.981 _atom_site.Cartn_y 32.011 _atom_site.Cartn_z 13.877 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 61.28 _atom_site.pdbx_formal_charge -1 _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #